Wall clock time and date at job start Mon Mar 30 2020 03:54:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.46911 * 2 1
4 4 C 1.53001 * 109.46944 * 240.00358 * 2 1 3
5 5 C 1.50695 * 109.47309 * 59.99749 * 4 2 1
6 6 H 1.07998 * 119.99983 * 0.02562 * 5 4 2
7 7 C 1.37884 * 120.00074 * 179.97438 * 5 4 2
8 8 N 1.31509 * 119.99613 * 0.02562 * 7 5 4
9 9 Si 1.86793 * 119.99886 * 180.02562 * 7 5 4
10 10 H 1.48495 * 109.47672 * 0.02562 * 9 7 5
11 11 H 1.48509 * 109.47012 * 120.00416 * 9 7 5
12 12 H 1.48498 * 109.46927 * 239.99794 * 9 7 5
13 13 C 1.52997 * 109.46938 * 120.00313 * 2 1 3
14 14 N 1.46895 * 109.46974 * 299.99881 * 13 2 1
15 15 C 1.46901 * 110.99950 * 180.02562 * 14 13 2
16 16 C 1.53787 * 113.61627 * 205.00092 * 15 14 13
17 17 C 1.53778 * 87.08020 * 219.93342 * 16 15 14
18 18 C 1.52999 * 113.61256 * 139.98118 * 17 16 15
19 19 O 1.42903 * 109.47256 * 176.53062 * 18 17 16
20 20 C 1.53778 * 87.17519 * 25.38811 * 17 16 15
21 21 H 1.08996 * 109.47131 * 299.99708 * 1 2 3
22 22 H 1.09002 * 109.46996 * 59.99869 * 1 2 3
23 23 H 1.09000 * 109.47373 * 179.97438 * 1 2 3
24 24 H 1.09002 * 109.46608 * 179.97438 * 3 2 1
25 25 H 1.09002 * 109.47397 * 299.99885 * 3 2 1
26 26 H 1.08996 * 109.46985 * 60.00202 * 3 2 1
27 27 H 1.09002 * 109.46953 * 180.02562 * 4 2 1
28 28 H 1.09008 * 109.46975 * 299.99601 * 4 2 1
29 29 H 0.97003 * 119.99689 * 179.97438 * 8 7 5
30 30 H 1.09002 * 109.47232 * 179.97438 * 13 2 1
31 31 H 1.09000 * 109.47329 * 60.00301 * 13 2 1
32 32 H 1.00897 * 111.00443 * 303.95239 * 14 13 2
33 33 H 1.09000 * 112.84928 * 336.19299 * 15 14 13
34 34 H 1.08995 * 113.61122 * 105.38319 * 16 15 14
35 35 H 1.08998 * 113.60857 * 334.48072 * 16 15 14
36 36 H 1.09000 * 113.61408 * 270.80005 * 17 16 15
37 37 H 1.08997 * 109.47286 * 56.52622 * 18 17 16
38 38 H 1.09008 * 109.47201 * 296.52402 * 18 17 16
39 39 H 0.96700 * 114.00311 * 180.02562 * 19 18 17
40 40 H 1.09001 * 113.61340 * 89.16095 * 20 17 16
41 41 H 1.08998 * 113.61572 * 220.06032 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 1.5376 -0.0108 -2.4797
6 1 0.9170 0.8675 -2.3806
7 6 1.8711 -0.4815 -3.7321
8 7 2.6272 -1.5507 -3.8527
9 14 1.2490 0.3995 -5.2571
10 1 0.4244 1.5665 -4.8530
11 1 2.4043 0.8664 -6.0651
12 1 0.4243 -0.5336 -6.0660
13 6 2.0400 -0.7213 1.2492
14 7 1.5503 -0.0289 2.4486
15 6 2.0218 -0.6947 3.6702
16 6 1.1201 -0.4509 4.8919
17 6 2.4096 -0.3286 5.7207
18 6 2.3592 0.7815 6.7724
19 8 3.5637 0.7645 7.5411
20 6 3.1160 0.0872 4.4196
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3634 -1.0276 -0.0005
24 1 3.1300 1.4424 0.0005
25 1 1.6766 1.9564 -0.8900
26 1 1.6766 1.9563 0.8900
27 1 3.1300 -0.7216 -1.2491
28 1 1.6767 -1.7489 -1.2493
29 1 2.8615 -1.8821 -4.7337
30 1 3.1300 -0.7217 1.2490
31 1 1.6767 -1.7490 1.2491
32 1 1.8197 0.9434 2.4402
33 1 2.2680 -1.7446 3.5119
34 1 0.5079 -1.3115 5.1613
35 1 0.5483 0.4753 4.8346
36 1 2.7611 -1.2782 6.1241
37 1 1.5057 0.6198 7.4307
38 1 2.2581 1.7472 6.2769
39 1 3.6010 1.4431 8.2290
40 1 3.0910 1.1608 4.2330
41 1 4.1128 -0.3396 4.3083
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000595001052.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:54:27
Heat of formation + Delta-G solvation = -54.124623 kcal
Electronic energy + Delta-G solvation = -17663.072833 eV
Core-core repulsion = 14963.618987 eV
Total energy + Delta-G solvation = -2699.453845 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.55186 -37.30043 -36.32021 -33.09958 -31.72965 -27.84001 -26.81221 -26.31098
-25.67636 -25.02264 -22.60540 -21.29244 -19.74894 -17.80009 -17.45722 -16.22140
-15.87881 -15.42772 -15.00860 -14.48217 -14.04636 -13.79674 -13.53089 -12.97873
-12.64426 -12.48431 -12.21980 -11.99134 -11.94908 -11.55349 -11.00851 -10.99184
-10.90242 -10.73212 -10.60695 -10.54695 -10.44812 -10.22753 -10.11569 -9.97819
-9.65771 -8.97878 -8.78451 -8.30210 -7.98292 -5.94535 -3.94461 3.33523
3.41333 3.44873 3.91362 4.44864 4.50797 4.55168 4.58959 4.92421
5.00934 5.21256 5.24467 5.38606 5.41374 5.64377 5.69981 5.74374
5.78294 5.82228 5.98970 6.00602 6.14236 6.26455 6.35316 6.39524
6.54271 6.68721 6.82632 6.85432 7.23554 7.27768 7.29094 7.37233
7.46445 7.71270 7.75089 7.88541 8.06158 8.50752 9.11267 9.68271
11.17228
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.058602 B = 0.003914 C = 0.003893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 477.688167 B = 7152.986455 C = 7190.175394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.060 4.060
3 C -0.129 4.129
4 C 0.033 3.967
5 C -0.506 4.506
6 H 0.059 0.941
7 C 0.054 3.946
8 N -0.898 5.898
9 Si 0.887 3.113
10 H -0.273 1.273
11 H -0.286 1.286
12 H -0.285 1.285
13 C 0.069 3.931
14 N -0.675 5.675
15 C 0.068 3.932
16 C -0.119 4.119
17 C -0.112 4.112
18 C 0.087 3.913
19 O -0.575 6.575
20 C -0.160 4.160
21 H 0.042 0.958
22 H 0.054 0.946
23 H 0.039 0.961
24 H 0.040 0.960
25 H 0.064 0.936
26 H 0.032 0.968
27 H 0.012 0.988
28 H 0.015 0.985
29 H 0.258 0.742
30 H 0.023 0.977
31 H 0.065 0.935
32 H 0.339 0.661
33 H 0.094 0.906
34 H 0.068 0.932
35 H 0.085 0.915
36 H 0.094 0.906
37 H 0.044 0.956
38 H 0.046 0.954
39 H 0.376 0.624
40 H 0.080 0.920
41 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.235 4.553 19.162 19.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.060 4.060
3 C -0.186 4.186
4 C -0.004 4.004
5 C -0.544 4.544
6 H 0.078 0.922
7 C -0.147 4.147
8 N -0.538 5.538
9 Si 0.716 3.284
10 H -0.198 1.198
11 H -0.212 1.212
12 H -0.212 1.212
13 C -0.059 4.059
14 N -0.305 5.305
15 C -0.043 4.043
16 C -0.158 4.158
17 C -0.131 4.131
18 C 0.009 3.991
19 O -0.380 6.380
20 C -0.199 4.199
21 H 0.061 0.939
22 H 0.073 0.927
23 H 0.058 0.942
24 H 0.059 0.941
25 H 0.083 0.917
26 H 0.051 0.949
27 H 0.031 0.969
28 H 0.033 0.967
29 H 0.068 0.932
30 H 0.042 0.958
31 H 0.084 0.916
32 H 0.160 0.840
33 H 0.112 0.888
34 H 0.087 0.913
35 H 0.103 0.897
36 H 0.112 0.888
37 H 0.063 0.937
38 H 0.064 0.936
39 H 0.222 0.778
40 H 0.099 0.901
41 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -1.640 3.619 18.595 19.015
hybrid contribution 0.592 1.078 -0.569 1.355
sum -1.049 4.697 18.027 18.658
Atomic orbital electron populations
1.21594 0.95031 1.00555 1.00104 1.20639 0.95843 0.94991 0.94525
1.21767 0.99696 0.96793 1.00343 1.19127 0.95883 0.95201 0.90210
1.21285 1.30615 1.11884 0.90617 0.92240 1.25023 0.95433 0.95142
0.99070 1.69979 1.37384 1.23255 1.23150 0.86608 0.78582 0.79740
0.83506 1.19777 1.21210 1.21164 1.22139 0.96401 0.98014 0.89377
1.60520 1.62825 1.06207 1.00994 1.22985 0.93478 0.98427 0.89459
1.23068 0.95554 1.02458 0.94687 1.22405 0.98505 0.98838 0.93346
1.22212 0.86188 0.98003 0.92701 1.86508 1.40648 1.59435 1.51396
1.23760 0.99288 1.00654 0.96214 0.93929 0.92745 0.94193 0.94109
0.91736 0.94887 0.96937 0.96699 0.93240 0.95835 0.91636 0.84043
0.88825 0.91283 0.89657 0.88784 0.93737 0.93566 0.77771 0.90117
0.91610
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16
2 C -0.06 -1.20 0.60 -154.51 -0.09 -1.29 16
3 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16
4 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16
5 C -0.51 -13.93 7.65 -34.44 -0.26 -14.19 16
6 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16
7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16
8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16
9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16
10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
13 C 0.07 1.21 4.49 -3.83 -0.02 1.19 16
14 N -0.68 -9.79 5.83 -105.77 -0.62 -10.40 16
15 C 0.07 0.84 4.18 -66.81 -0.28 0.56 16
16 C -0.12 -1.25 7.44 -25.92 -0.19 -1.44 16
17 C -0.11 -1.14 4.00 -89.81 -0.36 -1.50 16
18 C 0.09 0.77 6.87 37.16 0.26 1.02 16
19 O -0.57 -5.50 13.66 -35.23 -0.48 -5.98 16
20 C -0.16 -1.82 7.26 -25.83 -0.19 -2.01 16
21 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16
22 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16
23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16
24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
25 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16
26 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16
27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16
28 H 0.01 0.41 8.14 -51.92 -0.42 -0.02 16
29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.07 1.19 8.13 -51.93 -0.42 0.76 16
32 H 0.34 4.74 6.25 -39.29 -0.25 4.50 16
33 H 0.09 1.20 7.87 -51.93 -0.41 0.79 16
34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
35 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16
36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16
37 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16
38 H 0.05 0.38 7.88 -51.92 -0.41 -0.02 16
39 H 0.38 1.81 9.12 45.56 0.42 2.23 16
40 H 0.08 0.90 7.61 -51.93 -0.40 0.50 16
41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
LS Contribution 321.22 15.07 4.84 4.84
Total: -1.00 -30.57 321.22 -7.84 -38.41
By element:
Atomic # 1 Polarization: 8.86 SS G_CDS: -6.55 Total: 2.31 kcal
Atomic # 6 Polarization: -18.80 SS G_CDS: -0.75 Total: -19.56 kcal
Atomic # 7 Polarization: -36.83 SS G_CDS: 0.12 Total: -36.71 kcal
Atomic # 8 Polarization: -5.50 SS G_CDS: -0.48 Total: -5.98 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal
Total LS contribution 4.84 Total: 4.84 kcal
Total: -30.57 -7.84 -38.41 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595001052.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.713 kcal
(2) G-P(sol) polarization free energy of solvation -30.569 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.281 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.125 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds