Wall clock time and date at job start Mon Mar 30 2020 03:54:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.46911 * 2 1
4 4 C 1.53001 * 109.46944 * 240.00358 * 2 1 3
5 5 C 1.50695 * 109.47309 * 59.99749 * 4 2 1
6 6 H 1.07998 * 119.99983 * 0.02562 * 5 4 2
7 7 C 1.37884 * 120.00074 * 179.97438 * 5 4 2
8 8 N 1.31509 * 119.99613 * 0.02562 * 7 5 4
9 9 Si 1.86793 * 119.99886 * 180.02562 * 7 5 4
10 10 H 1.48495 * 109.47672 * 0.02562 * 9 7 5
11 11 H 1.48509 * 109.47012 * 120.00416 * 9 7 5
12 12 H 1.48498 * 109.46927 * 239.99794 * 9 7 5
13 13 C 1.52997 * 109.46938 * 120.00313 * 2 1 3
14 14 N 1.46895 * 109.46974 * 299.99881 * 13 2 1
15 15 C 1.46901 * 110.99950 * 180.02562 * 14 13 2
16 16 C 1.53787 * 113.61627 * 205.00092 * 15 14 13
17 17 C 1.53778 * 87.08020 * 219.93342 * 16 15 14
18 18 C 1.52999 * 113.61256 * 139.98118 * 17 16 15
19 19 O 1.42903 * 109.47256 * 176.53062 * 18 17 16
20 20 C 1.53778 * 87.17519 * 25.38811 * 17 16 15
21 21 H 1.08996 * 109.47131 * 299.99708 * 1 2 3
22 22 H 1.09002 * 109.46996 * 59.99869 * 1 2 3
23 23 H 1.09000 * 109.47373 * 179.97438 * 1 2 3
24 24 H 1.09002 * 109.46608 * 179.97438 * 3 2 1
25 25 H 1.09002 * 109.47397 * 299.99885 * 3 2 1
26 26 H 1.08996 * 109.46985 * 60.00202 * 3 2 1
27 27 H 1.09002 * 109.46953 * 180.02562 * 4 2 1
28 28 H 1.09008 * 109.46975 * 299.99601 * 4 2 1
29 29 H 0.97003 * 119.99689 * 179.97438 * 8 7 5
30 30 H 1.09002 * 109.47232 * 179.97438 * 13 2 1
31 31 H 1.09000 * 109.47329 * 60.00301 * 13 2 1
32 32 H 1.00897 * 111.00443 * 303.95239 * 14 13 2
33 33 H 1.09000 * 112.84928 * 336.19299 * 15 14 13
34 34 H 1.08995 * 113.61122 * 105.38319 * 16 15 14
35 35 H 1.08998 * 113.60857 * 334.48072 * 16 15 14
36 36 H 1.09000 * 113.61408 * 270.80005 * 17 16 15
37 37 H 1.08997 * 109.47286 * 56.52622 * 18 17 16
38 38 H 1.09008 * 109.47201 * 296.52402 * 18 17 16
39 39 H 0.96700 * 114.00311 * 180.02562 * 19 18 17
40 40 H 1.09001 * 113.61340 * 89.16095 * 20 17 16
41 41 H 1.08998 * 113.61572 * 220.06032 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 1.5376 -0.0108 -2.4797
6 1 0.9170 0.8675 -2.3806
7 6 1.8711 -0.4815 -3.7321
8 7 2.6272 -1.5507 -3.8527
9 14 1.2490 0.3995 -5.2571
10 1 0.4244 1.5665 -4.8530
11 1 2.4043 0.8664 -6.0651
12 1 0.4243 -0.5336 -6.0660
13 6 2.0400 -0.7213 1.2492
14 7 1.5503 -0.0289 2.4486
15 6 2.0218 -0.6947 3.6702
16 6 1.1201 -0.4509 4.8919
17 6 2.4096 -0.3286 5.7207
18 6 2.3592 0.7815 6.7724
19 8 3.5637 0.7645 7.5411
20 6 3.1160 0.0872 4.4196
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3634 -1.0276 -0.0005
24 1 3.1300 1.4424 0.0005
25 1 1.6766 1.9564 -0.8900
26 1 1.6766 1.9563 0.8900
27 1 3.1300 -0.7216 -1.2491
28 1 1.6767 -1.7489 -1.2493
29 1 2.8615 -1.8821 -4.7337
30 1 3.1300 -0.7217 1.2490
31 1 1.6767 -1.7490 1.2491
32 1 1.8197 0.9434 2.4402
33 1 2.2680 -1.7446 3.5119
34 1 0.5079 -1.3115 5.1613
35 1 0.5483 0.4753 4.8346
36 1 2.7611 -1.2782 6.1241
37 1 1.5057 0.6198 7.4307
38 1 2.2581 1.7472 6.2769
39 1 3.6010 1.4431 8.2290
40 1 3.0910 1.1608 4.2330
41 1 4.1128 -0.3396 4.3083
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000595001052.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:54:26
Heat of formation + Delta-G solvation = -75.359652 kcal
Electronic energy + Delta-G solvation = -17663.993653 eV
Core-core repulsion = 14963.618987 eV
Total energy + Delta-G solvation = -2700.374665 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.50631 -38.73261 -37.17470 -34.89565 -33.34748 -29.18389 -28.37842 -27.88659
-26.57643 -26.50036 -24.40962 -22.32446 -20.66777 -19.39031 -18.33344 -18.15440
-16.86949 -16.59840 -16.42680 -15.89540 -15.37874 -14.94340 -14.87917 -14.46658
-14.19717 -13.90126 -13.54190 -13.32892 -13.12297 -12.83928 -12.69252 -12.60424
-12.41605 -12.25243 -12.17567 -11.97942 -11.77718 -11.48352 -11.37702 -11.32367
-10.85534 -10.78854 -10.59974 -10.51230 -9.18267 -8.14010 -6.21095 1.40367
1.41231 1.53631 2.43909 3.15871 3.19960 3.48401 3.68181 3.73810
4.01279 4.12797 4.17549 4.29764 4.38296 4.48243 4.51275 4.69295
4.74283 4.81905 4.84816 4.86632 4.92926 4.96870 5.08886 5.15349
5.21725 5.22490 5.29105 5.47455 5.52325 5.54493 5.59419 5.67567
5.88259 5.93256 6.17828 6.37918 6.57968 6.94030 6.94486 7.46338
8.98681
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.058602 B = 0.003914 C = 0.003893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 477.688167 B = 7152.986455 C = 7190.175394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.057 4.057
3 C -0.122 4.122
4 C 0.039 3.961
5 C -0.513 4.513
6 H 0.067 0.933
7 C -0.006 4.006
8 N -0.939 5.939
9 Si 0.957 3.043
10 H -0.260 1.260
11 H -0.282 1.282
12 H -0.283 1.283
13 C 0.082 3.918
14 N -0.669 5.669
15 C 0.057 3.943
16 C -0.107 4.107
17 C -0.108 4.108
18 C 0.087 3.913
19 O -0.597 6.597
20 C -0.158 4.158
21 H 0.069 0.931
22 H 0.038 0.962
23 H 0.029 0.971
24 H 0.035 0.965
25 H 0.047 0.953
26 H 0.068 0.932
27 H -0.018 1.018
28 H -0.017 1.017
29 H 0.259 0.741
30 H 0.014 0.986
31 H 0.054 0.946
32 H 0.345 0.655
33 H 0.085 0.915
34 H 0.074 0.926
35 H 0.093 0.907
36 H 0.087 0.913
37 H 0.060 0.940
38 H 0.054 0.946
39 H 0.395 0.605
40 H 0.087 0.913
41 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.338 6.313 20.516 21.592
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.057 4.057
3 C -0.179 4.179
4 C 0.002 3.998
5 C -0.551 4.551
6 H 0.085 0.915
7 C -0.203 4.203
8 N -0.580 5.580
9 Si 0.783 3.217
10 H -0.183 1.183
11 H -0.208 1.208
12 H -0.209 1.209
13 C -0.047 4.047
14 N -0.300 5.300
15 C -0.054 4.054
16 C -0.145 4.145
17 C -0.127 4.127
18 C 0.010 3.990
19 O -0.405 6.405
20 C -0.197 4.197
21 H 0.088 0.912
22 H 0.057 0.943
23 H 0.048 0.952
24 H 0.054 0.946
25 H 0.066 0.934
26 H 0.087 0.913
27 H 0.001 0.999
28 H 0.001 0.999
29 H 0.068 0.932
30 H 0.032 0.968
31 H 0.073 0.927
32 H 0.166 0.834
33 H 0.103 0.897
34 H 0.093 0.907
35 H 0.112 0.888
36 H 0.106 0.894
37 H 0.079 0.921
38 H 0.073 0.927
39 H 0.245 0.755
40 H 0.105 0.895
41 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -2.750 5.402 19.982 20.882
hybrid contribution 0.974 0.497 -0.929 1.435
sum -1.776 5.899 19.054 20.025
Atomic orbital electron populations
1.21494 0.94179 1.00070 1.00575 1.20515 0.96403 0.95640 0.93173
1.21680 0.99381 0.95597 1.01243 1.19014 0.93869 0.94090 0.92850
1.21660 1.30109 1.11915 0.91415 0.91491 1.25945 0.95722 0.95932
1.02660 1.70122 1.38944 1.25015 1.23969 0.85504 0.78114 0.78820
0.79275 1.18349 1.20831 1.20856 1.21830 0.95672 0.97424 0.89767
1.60493 1.62685 1.06366 1.00434 1.23109 0.95113 0.98014 0.89116
1.22981 0.95467 1.03083 0.92965 1.22342 0.97791 0.99200 0.93323
1.22205 0.86534 0.97632 0.92666 1.86452 1.41075 1.60706 1.52315
1.23739 0.98390 1.00718 0.96848 0.91229 0.94281 0.95189 0.94599
0.93404 0.91307 0.99940 0.99876 0.93181 0.96756 0.92732 0.83407
0.89719 0.90684 0.88814 0.89425 0.92147 0.92739 0.75498 0.89470
0.92725
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.04 8.06 71.98 0.58 -3.46 16
2 C -0.06 -2.28 0.60 -52.18 -0.03 -2.31 16
3 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16
4 C 0.04 2.07 4.04 29.85 0.12 2.19 16
5 C -0.51 -28.65 7.65 25.60 0.20 -28.45 16
6 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16
7 C -0.01 -0.35 5.46 84.66 0.46 0.11 16
8 N -0.94 -58.04 13.29 21.45 0.28 -57.76 16
9 Si 0.96 44.76 29.54 68.60 2.03 46.79 16
10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16
11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16
12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
13 C 0.08 2.87 4.49 86.30 0.39 3.26 16
14 N -0.67 -18.19 5.83 -488.55 -2.85 -21.04 16
15 C 0.06 1.33 4.18 45.50 0.19 1.52 16
16 C -0.11 -1.96 7.44 31.12 0.23 -1.73 16
17 C -0.11 -1.97 4.00 -10.27 -0.04 -2.01 16
18 C 0.09 1.31 6.87 71.98 0.49 1.80 16
19 O -0.60 -10.09 13.66 -148.98 -2.04 -12.13 16
20 C -0.16 -3.33 7.26 31.18 0.23 -3.11 16
21 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16
22 H 0.04 1.58 6.62 -2.39 -0.02 1.57 16
23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16
25 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16
26 H 0.07 1.98 6.57 -2.39 -0.02 1.97 16
27 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16
28 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16
29 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16
30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16
31 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16
32 H 0.35 8.70 6.25 -89.70 -0.56 8.14 16
33 H 0.08 2.13 7.87 -2.39 -0.02 2.12 16
34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
35 H 0.09 1.60 8.10 -2.39 -0.02 1.59 16
36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
38 H 0.05 0.73 7.88 -2.38 -0.02 0.71 16
39 H 0.40 2.88 9.12 -74.06 -0.68 2.21 16
40 H 0.09 1.74 7.61 -2.39 -0.02 1.72 16
41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16
Total: -1.00 -66.22 321.22 0.58 -65.64
By element:
Atomic # 1 Polarization: 14.75 SS G_CDS: -0.24 Total: 14.52 kcal
Atomic # 6 Polarization: -39.41 SS G_CDS: 3.38 Total: -36.02 kcal
Atomic # 7 Polarization: -76.23 SS G_CDS: -2.56 Total: -78.80 kcal
Atomic # 8 Polarization: -10.09 SS G_CDS: -2.04 Total: -12.13 kcal
Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal
Total: -66.22 0.58 -65.64 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595001052.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.717 kcal
(2) G-P(sol) polarization free energy of solvation -66.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.935 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.360 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds