Wall clock time and date at job start Mon Mar 30 2020 03:19:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42903 * 113.99601 * 2 1
4 4 C 1.53005 * 109.46943 * 180.02562 * 3 2 1
5 5 N 1.46498 * 109.46677 * 65.00597 * 4 3 2
6 6 C 1.36942 * 119.99573 * 264.44174 * 5 4 3
7 7 H 1.08003 * 119.99788 * 146.18204 * 6 5 4
8 8 C 1.38815 * 120.00459 * 326.18593 * 6 5 4
9 9 N 1.31618 * 119.99333 * 337.61090 * 8 6 5
10 10 Si 1.86798 * 120.00016 * 157.60772 * 8 6 5
11 11 H 1.48496 * 109.47104 * 0.02562 * 10 8 6
12 12 H 1.48502 * 109.46619 * 120.00168 * 10 8 6
13 13 H 1.48500 * 109.47043 * 239.99902 * 10 8 6
14 14 C 1.46501 * 120.00351 * 84.45055 * 5 4 3
15 15 C 1.52999 * 109.47295 * 89.99665 * 14 5 4
16 16 C 1.53778 * 113.61278 * 274.13530 * 15 14 5
17 17 C 1.53943 * 87.02030 * 220.04999 * 16 15 14
18 18 C 1.53002 * 113.54082 * 270.81189 * 17 16 15
19 19 C 1.53004 * 113.74394 * 139.94557 * 17 16 15
20 20 C 1.53775 * 113.61233 * 176.53161 * 15 14 5
21 21 H 1.09004 * 109.46464 * 299.99566 * 1 2 3
22 22 H 1.08994 * 109.47463 * 59.99278 * 1 2 3
23 23 H 1.08999 * 109.46963 * 180.02562 * 1 2 3
24 24 H 1.08999 * 109.47031 * 60.00739 * 3 2 1
25 25 H 1.08998 * 109.47708 * 300.00797 * 3 2 1
26 26 H 1.08997 * 109.47137 * 305.00178 * 4 3 2
27 27 H 1.09002 * 109.46934 * 185.00270 * 4 3 2
28 28 H 0.97005 * 119.99700 * 180.02562 * 9 8 6
29 29 H 1.08999 * 109.46857 * 329.99078 * 14 5 4
30 30 H 1.09008 * 109.46734 * 209.99961 * 14 5 4
31 31 H 1.09000 * 112.84990 * 45.33477 * 15 14 5
32 32 H 1.09004 * 113.61504 * 334.57461 * 16 15 14
33 33 H 1.09007 * 113.61378 * 105.47015 * 16 15 14
34 34 H 1.08993 * 109.47427 * 157.49358 * 18 17 16
35 35 H 1.08998 * 109.46843 * 277.49638 * 18 17 16
36 36 H 1.09001 * 109.46616 * 37.49563 * 18 17 16
37 37 H 1.08996 * 109.47359 * 322.39982 * 19 17 16
38 38 H 1.08996 * 109.47236 * 82.40563 * 19 17 16
39 39 H 1.09006 * 109.47196 * 202.40471 * 19 17 16
40 40 H 1.09002 * 113.61250 * 254.52896 * 20 15 14
41 41 H 1.09006 * 113.61707 * 25.42618 * 20 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1848 -0.0006
5 7 3.9756 0.5647 -1.2528
6 6 4.2063 -0.7842 -1.3047
7 1 3.9949 -1.3337 -2.2102
8 6 4.7118 -1.4452 -0.1937
9 7 5.3724 -0.7750 0.7266
10 14 4.4546 -3.2857 -0.0048
11 1 3.6869 -3.8001 -1.1672
12 1 5.7732 -3.9660 0.0572
13 1 3.6998 -3.5542 1.2456
14 6 4.1691 1.3875 -2.4494
15 6 5.6120 1.8947 -2.4917
16 6 5.8320 3.1930 -1.6974
17 6 6.7481 3.6470 -2.8483
18 6 8.2086 3.2282 -2.6684
19 6 6.5944 5.1254 -3.2115
20 6 5.9440 2.7026 -3.7573
21 1 -0.3632 0.5138 0.8901
22 1 -0.3634 0.5139 -0.8898
23 1 -0.3633 -1.0277 0.0005
24 1 1.6886 1.8463 0.8900
25 1 1.6885 1.8465 -0.8899
26 1 3.8515 0.5683 0.8409
27 1 3.9785 2.1767 0.0890
28 1 5.7260 -1.2370 1.5028
29 1 3.4861 2.2365 -2.4208
30 1 3.9680 0.7892 -3.3381
31 1 6.3410 1.1163 -2.2668
32 1 4.9315 3.7980 -1.5914
33 1 6.3565 3.0438 -0.7535
34 1 8.7040 3.2112 -3.6392
35 1 8.7131 3.9406 -2.0156
36 1 8.2493 2.2345 -2.2223
37 1 5.5459 5.4120 -3.1319
38 1 7.1896 5.7311 -2.5282
39 1 6.9384 5.2862 -4.2333
40 1 6.5586 2.1581 -4.4741
41 1 5.0741 3.1733 -4.2156
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000599438495.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:39
Heat of formation + Delta-G solvation = -16.747946 kcal
Electronic energy + Delta-G solvation = -18524.596627 eV
Core-core repulsion = 15826.763555 eV
Total energy + Delta-G solvation = -2697.833071 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-39.20534 -37.09475 -35.05443 -31.60477 -30.37787 -28.55598 -27.15952 -25.66726
-25.51897 -25.10124 -22.98150 -20.82589 -19.38406 -17.72100 -16.57086 -15.68208
-15.03370 -14.86087 -14.46081 -14.07836 -13.90862 -13.80108 -13.40746 -13.24731
-12.53681 -12.36619 -12.06703 -11.67784 -11.45354 -11.42148 -11.13030 -10.99597
-10.81372 -10.73136 -10.56308 -10.37578 -9.98812 -9.91006 -9.79744 -9.58464
-9.36195 -9.21197 -8.79052 -8.28545 -6.43639 -5.61703 -3.10748 3.49757
3.57536 3.61121 4.64820 4.73468 4.91416 5.13061 5.18551 5.47250
5.51965 5.64455 5.72759 5.79706 5.83226 5.84577 5.91597 6.06073
6.09283 6.14361 6.17638 6.19999 6.28861 6.29517 6.34885 6.36179
6.49466 6.59260 6.61916 6.70531 6.80906 6.89796 7.00141 7.10486
7.39440 7.79234 7.97700 8.12323 8.68753 9.35664 10.01283 10.55361
11.40924
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.021540 B = 0.007733 C = 0.006287
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1299.600736 B = 3620.088569 C = 4452.549137
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.357 6.357
3 C 0.045 3.955
4 C 0.143 3.857
5 N -0.575 5.575
6 C -0.233 4.233
7 H 0.057 0.943
8 C 0.011 3.989
9 N -0.894 5.894
10 Si 0.895 3.105
11 H -0.279 1.279
12 H -0.296 1.296
13 H -0.290 1.290
14 C 0.157 3.843
15 C -0.114 4.114
16 C -0.118 4.118
17 C -0.095 4.095
18 C -0.125 4.125
19 C -0.132 4.132
20 C -0.132 4.132
21 H 0.026 0.974
22 H 0.028 0.972
23 H 0.074 0.926
24 H 0.024 0.976
25 H 0.025 0.975
26 H 0.107 0.893
27 H 0.038 0.962
28 H 0.250 0.750
29 H 0.030 0.970
30 H 0.041 0.959
31 H 0.092 0.908
32 H 0.068 0.932
33 H 0.061 0.939
34 H 0.049 0.951
35 H 0.050 0.950
36 H 0.062 0.938
37 H 0.052 0.948
38 H 0.048 0.952
39 H 0.048 0.952
40 H 0.056 0.944
41 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.604 8.870 -4.600 10.120
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.275 6.275
3 C -0.034 4.034
4 C 0.017 3.983
5 N -0.295 5.295
6 C -0.363 4.363
7 H 0.075 0.925
8 C -0.187 4.187
9 N -0.538 5.538
10 Si 0.726 3.274
11 H -0.204 1.204
12 H -0.223 1.223
13 H -0.217 1.217
14 C 0.031 3.969
15 C -0.135 4.135
16 C -0.155 4.155
17 C -0.095 4.095
18 C -0.182 4.182
19 C -0.189 4.189
20 C -0.170 4.170
21 H 0.044 0.956
22 H 0.047 0.953
23 H 0.092 0.908
24 H 0.042 0.958
25 H 0.043 0.957
26 H 0.125 0.875
27 H 0.056 0.944
28 H 0.060 0.940
29 H 0.048 0.952
30 H 0.059 0.941
31 H 0.111 0.889
32 H 0.086 0.914
33 H 0.080 0.920
34 H 0.068 0.932
35 H 0.069 0.931
36 H 0.081 0.919
37 H 0.071 0.929
38 H 0.068 0.932
39 H 0.067 0.933
40 H 0.075 0.925
41 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -1.418 8.630 -4.467 9.821
hybrid contribution -0.428 -0.625 0.226 0.791
sum -1.846 8.005 -4.241 9.245
Atomic orbital electron populations
1.22631 0.84326 1.01432 0.98374 1.88204 1.16515 1.27918 1.94817
1.23478 0.99366 0.83933 0.96666 1.21015 0.86874 0.96970 0.93489
1.43703 1.75657 1.04225 1.05880 1.18965 1.35183 0.82820 0.99363
0.92531 1.24925 0.97213 0.97383 0.99216 1.69980 1.36407 1.34998
1.12432 0.86344 0.77035 0.86282 0.77743 1.20401 1.22317 1.21673
1.20874 0.91850 0.93225 0.90983 1.23118 1.01259 0.95660 0.93430
1.23010 0.98053 0.97585 0.96847 1.21840 0.95083 0.94086 0.98448
1.21549 0.94174 1.01668 1.00797 1.21713 1.01102 0.95627 1.00444
1.23087 0.98967 0.97941 0.97021 0.95559 0.95342 0.90754 0.95834
0.95656 0.87523 0.94362 0.94013 0.95159 0.94107 0.88949 0.91390
0.91981 0.93180 0.93100 0.91903 0.92930 0.93246 0.93275 0.92541
0.91067
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.51 11.01 101.05 1.11 1.62 16
2 O -0.36 -8.07 10.44 -35.23 -0.37 -8.44 16
3 C 0.04 0.93 6.28 37.16 0.23 1.17 16
4 C 0.14 3.40 5.63 -4.04 -0.02 3.38 16
5 N -0.58 -14.24 2.41 -173.23 -0.42 -14.66 16
6 C -0.23 -6.47 9.28 -15.06 -0.14 -6.61 16
7 H 0.06 1.60 7.92 -52.48 -0.42 1.18 16
8 C 0.01 0.31 4.91 -17.43 -0.09 0.23 16
9 N -0.89 -25.93 11.34 55.49 0.63 -25.30 16
10 Si 0.90 22.64 29.61 -169.99 -5.03 17.61 16
11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
12 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16
13 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
14 C 0.16 3.30 5.51 -4.04 -0.02 3.28 16
15 C -0.11 -2.18 3.61 -89.81 -0.32 -2.50 16
16 C -0.12 -2.04 6.18 -25.83 -0.16 -2.20 16
17 C -0.09 -1.40 1.39 -153.61 -0.21 -1.61 16
18 C -0.12 -1.77 9.07 37.16 0.34 -1.44 16
19 C -0.13 -1.64 9.20 37.16 0.34 -1.30 16
20 C -0.13 -2.06 6.79 -25.92 -0.18 -2.24 16
21 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16
22 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16
23 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
25 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16
26 H 0.11 2.92 5.34 -51.93 -0.28 2.65 16
27 H 0.04 0.85 7.52 -51.93 -0.39 0.46 16
28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
29 H 0.03 0.59 7.78 -51.93 -0.40 0.18 16
30 H 0.04 0.87 8.04 -51.92 -0.42 0.45 16
31 H 0.09 2.09 7.66 -51.93 -0.40 1.69 16
32 H 0.07 1.13 7.75 -51.93 -0.40 0.73 16
33 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16
34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.06 1.01 7.34 -51.93 -0.38 0.62 16
37 H 0.05 0.64 7.96 -51.93 -0.41 0.23 16
38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16
41 H 0.07 1.04 8.06 -51.93 -0.42 0.63 16
LS Contribution 327.13 15.07 4.93 4.93
Total: -1.00 -29.37 327.13 -7.08 -36.44
By element:
Atomic # 1 Polarization: 5.34 SS G_CDS: -7.70 Total: -2.36 kcal
Atomic # 6 Polarization: -9.11 SS G_CDS: 0.88 Total: -8.23 kcal
Atomic # 7 Polarization: -40.16 SS G_CDS: 0.21 Total: -39.95 kcal
Atomic # 8 Polarization: -8.07 SS G_CDS: -0.37 Total: -8.44 kcal
Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -29.37 -7.08 -36.44 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000599438495.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.695 kcal
(2) G-P(sol) polarization free energy of solvation -29.366 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.671 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.748 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds