Wall clock time and date at job start Mon Mar 30 2020 03:19:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42903 * 113.99601 * 2 1
4 4 C 1.53005 * 109.46943 * 180.02562 * 3 2 1
5 5 N 1.46498 * 109.46677 * 65.00597 * 4 3 2
6 6 C 1.36942 * 119.99573 * 264.44174 * 5 4 3
7 7 H 1.08003 * 119.99788 * 146.18204 * 6 5 4
8 8 C 1.38815 * 120.00459 * 326.18593 * 6 5 4
9 9 N 1.31618 * 119.99333 * 337.61090 * 8 6 5
10 10 Si 1.86798 * 120.00016 * 157.60772 * 8 6 5
11 11 H 1.48496 * 109.47104 * 0.02562 * 10 8 6
12 12 H 1.48502 * 109.46619 * 120.00168 * 10 8 6
13 13 H 1.48500 * 109.47043 * 239.99902 * 10 8 6
14 14 C 1.46501 * 120.00351 * 84.45055 * 5 4 3
15 15 C 1.52999 * 109.47295 * 89.99665 * 14 5 4
16 16 C 1.53778 * 113.61278 * 274.13530 * 15 14 5
17 17 C 1.53943 * 87.02030 * 220.04999 * 16 15 14
18 18 C 1.53002 * 113.54082 * 270.81189 * 17 16 15
19 19 C 1.53004 * 113.74394 * 139.94557 * 17 16 15
20 20 C 1.53775 * 113.61233 * 176.53161 * 15 14 5
21 21 H 1.09004 * 109.46464 * 299.99566 * 1 2 3
22 22 H 1.08994 * 109.47463 * 59.99278 * 1 2 3
23 23 H 1.08999 * 109.46963 * 180.02562 * 1 2 3
24 24 H 1.08999 * 109.47031 * 60.00739 * 3 2 1
25 25 H 1.08998 * 109.47708 * 300.00797 * 3 2 1
26 26 H 1.08997 * 109.47137 * 305.00178 * 4 3 2
27 27 H 1.09002 * 109.46934 * 185.00270 * 4 3 2
28 28 H 0.97005 * 119.99700 * 180.02562 * 9 8 6
29 29 H 1.08999 * 109.46857 * 329.99078 * 14 5 4
30 30 H 1.09008 * 109.46734 * 209.99961 * 14 5 4
31 31 H 1.09000 * 112.84990 * 45.33477 * 15 14 5
32 32 H 1.09004 * 113.61504 * 334.57461 * 16 15 14
33 33 H 1.09007 * 113.61378 * 105.47015 * 16 15 14
34 34 H 1.08993 * 109.47427 * 157.49358 * 18 17 16
35 35 H 1.08998 * 109.46843 * 277.49638 * 18 17 16
36 36 H 1.09001 * 109.46616 * 37.49563 * 18 17 16
37 37 H 1.08996 * 109.47359 * 322.39982 * 19 17 16
38 38 H 1.08996 * 109.47236 * 82.40563 * 19 17 16
39 39 H 1.09006 * 109.47196 * 202.40471 * 19 17 16
40 40 H 1.09002 * 113.61250 * 254.52896 * 20 15 14
41 41 H 1.09006 * 113.61707 * 25.42618 * 20 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1848 -0.0006
5 7 3.9756 0.5647 -1.2528
6 6 4.2063 -0.7842 -1.3047
7 1 3.9949 -1.3337 -2.2102
8 6 4.7118 -1.4452 -0.1937
9 7 5.3724 -0.7750 0.7266
10 14 4.4546 -3.2857 -0.0048
11 1 3.6869 -3.8001 -1.1672
12 1 5.7732 -3.9660 0.0572
13 1 3.6998 -3.5542 1.2456
14 6 4.1691 1.3875 -2.4494
15 6 5.6120 1.8947 -2.4917
16 6 5.8320 3.1930 -1.6974
17 6 6.7481 3.6470 -2.8483
18 6 8.2086 3.2282 -2.6684
19 6 6.5944 5.1254 -3.2115
20 6 5.9440 2.7026 -3.7573
21 1 -0.3632 0.5138 0.8901
22 1 -0.3634 0.5139 -0.8898
23 1 -0.3633 -1.0277 0.0005
24 1 1.6886 1.8463 0.8900
25 1 1.6885 1.8465 -0.8899
26 1 3.8515 0.5683 0.8409
27 1 3.9785 2.1767 0.0890
28 1 5.7260 -1.2370 1.5028
29 1 3.4861 2.2365 -2.4208
30 1 3.9680 0.7892 -3.3381
31 1 6.3410 1.1163 -2.2668
32 1 4.9315 3.7980 -1.5914
33 1 6.3565 3.0438 -0.7535
34 1 8.7040 3.2112 -3.6392
35 1 8.7131 3.9406 -2.0156
36 1 8.2493 2.2345 -2.2223
37 1 5.5459 5.4120 -3.1319
38 1 7.1896 5.7311 -2.5282
39 1 6.9384 5.2862 -4.2333
40 1 6.5586 2.1581 -4.4741
41 1 5.0741 3.1733 -4.2156
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000599438495.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:39
Heat of formation + Delta-G solvation = -32.932272 kcal
Electronic energy + Delta-G solvation = -18525.298432 eV
Core-core repulsion = 15826.763555 eV
Total energy + Delta-G solvation = -2698.534876 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.57499 -38.73663 -36.87157 -33.50162 -31.94224 -30.21642 -28.23257 -27.34221
-27.10972 -26.45260 -24.79764 -22.52631 -21.04164 -18.99349 -18.58726 -17.32128
-16.71442 -16.56371 -16.05949 -15.65343 -15.48445 -15.21259 -14.95152 -14.75572
-13.91219 -13.70109 -13.48153 -13.41523 -12.92463 -12.77864 -12.69941 -12.60146
-12.48595 -12.33708 -12.17727 -12.10869 -11.89483 -11.50648 -11.32676 -11.28160
-10.76855 -10.69626 -10.40277 -10.32290 -8.45831 -7.72652 -5.24297 1.45096
1.49214 1.57776 2.58921 3.20637 3.38575 3.64684 3.74437 3.93836
3.94904 4.19033 4.40582 4.46152 4.53463 4.61368 4.66769 4.74386
4.80554 4.82369 4.83816 4.86666 4.90391 4.98654 5.01670 5.03615
5.07277 5.09252 5.17634 5.24264 5.32510 5.41536 5.47448 5.71988
5.76293 5.83569 5.90644 6.49431 6.67272 7.28493 8.00794 8.48725
9.25566
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.021540 B = 0.007733 C = 0.006287
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1299.600736 B = 3620.088569 C = 4452.549137
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.401 6.401
3 C 0.053 3.947
4 C 0.144 3.856
5 N -0.588 5.588
6 C -0.235 4.235
7 H 0.045 0.955
8 C -0.034 4.034
9 N -0.918 5.918
10 Si 0.946 3.054
11 H -0.274 1.274
12 H -0.295 1.295
13 H -0.294 1.294
14 C 0.157 3.843
15 C -0.120 4.120
16 C -0.116 4.116
17 C -0.085 4.085
18 C -0.125 4.125
19 C -0.127 4.127
20 C -0.118 4.118
21 H 0.047 0.953
22 H 0.043 0.957
23 H 0.083 0.917
24 H 0.047 0.953
25 H 0.039 0.961
26 H 0.069 0.931
27 H 0.046 0.954
28 H 0.245 0.755
29 H 0.051 0.949
30 H 0.033 0.967
31 H 0.048 0.952
32 H 0.079 0.921
33 H 0.035 0.965
34 H 0.068 0.932
35 H 0.062 0.938
36 H 0.033 0.967
37 H 0.058 0.942
38 H 0.057 0.943
39 H 0.065 0.935
40 H 0.060 0.940
41 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.474 10.525 -5.791 12.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.320 6.320
3 C -0.025 4.025
4 C 0.017 3.983
5 N -0.308 5.308
6 C -0.366 4.366
7 H 0.063 0.937
8 C -0.230 4.230
9 N -0.564 5.564
10 Si 0.776 3.224
11 H -0.199 1.199
12 H -0.222 1.222
13 H -0.221 1.221
14 C 0.032 3.968
15 C -0.141 4.141
16 C -0.153 4.153
17 C -0.085 4.085
18 C -0.182 4.182
19 C -0.184 4.184
20 C -0.156 4.156
21 H 0.065 0.935
22 H 0.062 0.938
23 H 0.101 0.899
24 H 0.065 0.935
25 H 0.057 0.943
26 H 0.087 0.913
27 H 0.064 0.936
28 H 0.055 0.945
29 H 0.069 0.931
30 H 0.052 0.948
31 H 0.066 0.934
32 H 0.098 0.902
33 H 0.054 0.946
34 H 0.087 0.913
35 H 0.081 0.919
36 H 0.052 0.948
37 H 0.077 0.923
38 H 0.076 0.924
39 H 0.084 0.916
40 H 0.079 0.921
41 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -2.303 10.300 -5.676 11.984
hybrid contribution -0.205 -1.132 0.580 1.288
sum -2.507 9.168 -5.096 10.785
Atomic orbital electron populations
1.22834 0.81470 1.02703 1.00092 1.88123 1.19761 1.28897 1.95199
1.23269 0.97019 0.83895 0.98361 1.20902 0.89247 0.96317 0.91803
1.43854 1.76065 1.03792 1.07130 1.19061 1.34113 0.84519 0.98859
0.93706 1.25468 0.97731 1.00428 0.99411 1.70102 1.37625 1.35960
1.12754 0.85536 0.76717 0.82769 0.77340 1.19903 1.22221 1.22144
1.20974 0.93410 0.93270 0.89185 1.22894 0.98761 0.95515 0.96934
1.22995 0.99075 0.96844 0.96398 1.21792 0.94522 0.95911 0.96231
1.21551 0.94453 1.00322 1.01862 1.21670 1.01858 0.93223 1.01623
1.23032 0.99816 0.97166 0.95612 0.93483 0.93810 0.89859 0.93504
0.94267 0.91276 0.93553 0.94538 0.93051 0.94812 0.93382 0.90221
0.94600 0.91341 0.91894 0.94813 0.92313 0.92392 0.91605 0.92117
0.89170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.81 11.01 113.37 1.25 2.06 16
2 O -0.40 -17.77 10.44 -148.98 -1.56 -19.32 16
3 C 0.05 2.15 6.28 71.98 0.45 2.60 16
4 C 0.14 6.87 5.63 86.38 0.49 7.36 16
5 N -0.59 -29.50 2.41 -701.98 -1.69 -31.19 16
6 C -0.23 -13.31 9.28 84.03 0.78 -12.53 16
7 H 0.05 2.60 7.92 -2.91 -0.02 2.58 16
8 C -0.03 -1.99 4.91 84.86 0.42 -1.57 16
9 N -0.92 -55.09 11.34 21.65 0.25 -54.84 16
10 Si 0.95 47.54 29.61 68.60 2.03 49.57 16
11 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16
12 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16
13 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16
14 C 0.16 6.55 5.51 86.38 0.48 7.03 16
15 C -0.12 -4.63 3.61 -10.27 -0.04 -4.66 16
16 C -0.12 -3.94 6.18 31.18 0.19 -3.74 16
17 C -0.08 -2.33 1.39 -51.60 -0.07 -2.40 16
18 C -0.12 -3.41 9.07 71.98 0.65 -2.75 16
19 C -0.13 -2.69 9.20 71.98 0.66 -2.03 16
20 C -0.12 -3.47 6.79 31.12 0.21 -3.26 16
21 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16
22 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16
23 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16
24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
25 H 0.04 1.46 8.12 -2.39 -0.02 1.44 16
26 H 0.07 3.90 5.34 -2.39 -0.01 3.88 16
27 H 0.05 2.07 7.52 -2.39 -0.02 2.05 16
28 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16
29 H 0.05 1.91 7.78 -2.39 -0.02 1.89 16
30 H 0.03 1.43 8.04 -2.38 -0.02 1.41 16
31 H 0.05 2.28 7.66 -2.39 -0.02 2.26 16
32 H 0.08 2.51 7.75 -2.39 -0.02 2.49 16
33 H 0.04 1.38 8.10 -2.38 -0.02 1.36 16
34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16
36 H 0.03 1.10 7.34 -2.39 -0.02 1.08 16
37 H 0.06 1.19 7.96 -2.39 -0.02 1.18 16
38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
39 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16
40 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16
41 H 0.09 2.34 8.06 -2.38 -0.02 2.32 16
Total: -1.00 -64.70 327.13 5.45 -59.25
By element:
Atomic # 1 Polarization: 9.49 SS G_CDS: 0.95 Total: 10.44 kcal
Atomic # 6 Polarization: -19.37 SS G_CDS: 5.47 Total: -13.90 kcal
Atomic # 7 Polarization: -84.59 SS G_CDS: -1.45 Total: -86.04 kcal
Atomic # 8 Polarization: -17.77 SS G_CDS: -1.56 Total: -19.32 kcal
Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal
Total: -64.70 5.45 -59.25 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000599438495.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.320 kcal
(2) G-P(sol) polarization free energy of solvation -64.705 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.384 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.932 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds