Wall clock time and date at job start Mon Mar 30 2020 03:21:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53004 * 109.47438 * 2 1
4 4 C 1.52999 * 109.46996 * 119.99574 * 2 1 3
5 5 C 1.53008 * 109.46727 * 60.00315 * 4 2 1
6 6 C 1.52994 * 109.47467 * 59.99675 * 5 4 2
7 7 C 1.52997 * 109.46946 * 300.00380 * 6 5 4
8 8 C 1.53008 * 109.46999 * 180.02562 * 7 6 5
9 9 O 1.42903 * 109.47205 * 55.50374 * 8 7 6
10 10 N 1.46900 * 109.47102 * 299.99321 * 7 6 5
11 11 C 1.46900 * 111.00169 * 303.37178 * 10 7 6
12 12 C 1.50704 * 109.47009 * 173.21622 * 11 10 7
13 13 H 1.07997 * 119.99809 * 0.02562 * 12 11 10
14 14 C 1.37877 * 119.99729 * 179.97438 * 12 11 10
15 15 N 1.31517 * 120.00432 * 0.02562 * 14 12 11
16 16 Si 1.86800 * 119.99937 * 180.02562 * 14 12 11
17 17 H 1.48508 * 109.46900 * 0.02562 * 16 14 12
18 18 H 1.48501 * 109.47282 * 119.99586 * 16 14 12
19 19 H 1.48497 * 109.47384 * 240.00226 * 16 14 12
20 20 C 1.52993 * 109.47607 * 59.99737 * 7 6 5
21 21 H 1.08999 * 109.46872 * 312.14124 * 1 2 3
22 22 H 1.09000 * 109.46954 * 72.13264 * 1 2 3
23 23 H 1.08993 * 109.47457 * 192.13874 * 1 2 3
24 24 H 1.08989 * 109.47309 * 179.97438 * 3 2 1
25 25 H 1.09001 * 109.46512 * 300.00162 * 3 2 1
26 26 H 1.09007 * 109.47055 * 59.99521 * 3 2 1
27 27 H 1.08996 * 109.47334 * 179.97438 * 4 2 1
28 28 H 1.08999 * 109.47474 * 300.00212 * 4 2 1
29 29 H 1.09003 * 109.46772 * 180.02562 * 5 4 2
30 30 H 1.09001 * 109.47014 * 299.99516 * 5 4 2
31 31 H 1.09001 * 109.47134 * 59.99914 * 6 5 4
32 32 H 1.08992 * 109.47393 * 180.02562 * 6 5 4
33 33 H 1.08998 * 109.47226 * 175.50963 * 8 7 6
34 34 H 1.09007 * 109.46561 * 295.50637 * 8 7 6
35 35 H 0.96699 * 113.99498 * 180.02562 * 9 8 7
36 36 H 1.00899 * 110.99956 * 179.41572 * 10 7 6
37 37 H 1.08999 * 109.47473 * 293.21722 * 11 10 7
38 38 H 1.08997 * 109.46947 * 53.21788 * 11 10 7
39 39 H 0.96989 * 120.00043 * 179.97438 * 15 14 12
40 40 H 1.08997 * 109.47496 * 179.97438 * 20 7 6
41 41 H 1.09001 * 109.47040 * 60.00119 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 1.5300 -2.1637 1.2493
6 6 2.0399 -2.8850 0.0001
7 6 1.5300 -2.1637 -1.2491
8 6 2.0395 -2.8854 -2.4984
9 8 1.6507 -4.2596 -2.4465
10 7 0.0610 -2.1637 -1.2492
11 6 -0.4655 -3.5328 -1.1687
12 6 -1.9627 -3.4863 -1.0034
13 1 -2.4722 -2.5349 -0.9627
14 6 -2.6821 -4.6584 -0.9051
15 7 -2.0617 -5.8170 -0.9552
16 14 -4.5380 -4.6008 -0.7010
17 1 -4.9894 -3.1863 -0.6743
18 1 -5.1832 -5.3044 -1.8385
19 1 -4.9169 -5.2659 0.5715
20 6 2.0400 -0.7213 -1.2492
21 1 -0.3633 0.6895 0.7620
22 1 -0.3633 0.3153 -0.9781
23 1 -0.3634 -1.0046 0.2161
24 1 3.1300 1.4425 0.0005
25 1 1.6767 1.9563 -0.8900
26 1 1.6767 1.9564 0.8900
27 1 3.1299 -0.7216 1.2491
28 1 1.6766 -0.2073 2.1393
29 1 1.8929 -2.6774 2.1395
30 1 0.4399 -2.1637 1.2493
31 1 3.1299 -2.8850 0.0001
32 1 1.6762 -3.9125 -0.0002
33 1 1.6120 -2.4201 -3.3866
34 1 3.1266 -2.8166 -2.5397
35 1 1.9410 -4.7794 -3.2085
36 1 -0.3005 -1.6844 -2.0601
37 1 -0.2175 -4.0719 -2.0830
38 1 -0.0213 -4.0431 -0.3141
39 1 -2.5678 -6.6414 -0.8857
40 1 1.6771 -0.2076 -2.1394
41 1 3.1300 -0.7213 -1.2492
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000599597259.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:11
Heat of formation + Delta-G solvation = -55.288780 kcal
Electronic energy + Delta-G solvation = -19356.480231 eV
Core-core repulsion = 16656.975904 eV
Total energy + Delta-G solvation = -2699.504327 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.83968 -36.44810 -34.10338 -32.55507 -31.68993 -29.90831 -26.83209 -25.86438
-25.62513 -25.09156 -21.77615 -21.41362 -18.87744 -17.96515 -16.77807 -16.08143
-15.26475 -14.70161 -14.49840 -14.27875 -14.00951 -13.64628 -13.15400 -12.87119
-12.33956 -12.01708 -11.78523 -11.75310 -11.62303 -11.29145 -11.21007 -11.05052
-10.77630 -10.62003 -10.49753 -10.38766 -10.23901 -9.83675 -9.71429 -9.65405
-9.38379 -9.22363 -8.84815 -8.26563 -6.77881 -5.85679 -3.85790 3.37679
3.45248 3.49869 4.54132 4.63025 5.07469 5.11506 5.31439 5.39878
5.48812 5.53079 5.60962 5.74314 5.80545 5.84096 5.91505 5.96125
6.04691 6.09743 6.11200 6.18388 6.30960 6.36592 6.47348 6.54397
6.65699 6.69421 6.86601 6.95441 7.01399 7.12466 7.60344 7.67761
7.92103 7.95533 8.16080 8.39145 8.61496 8.81401 9.26498 9.76525
11.23901
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.025463 B = 0.008157 C = 0.007082
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1099.379357 B = 3431.706440 C = 3952.520151
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.051 4.051
3 C -0.141 4.141
4 C -0.101 4.101
5 C -0.116 4.116
6 C -0.098 4.098
7 C 0.117 3.883
8 C 0.050 3.950
9 O -0.538 6.538
10 N -0.661 5.661
11 C 0.182 3.818
12 C -0.508 4.508
13 H 0.057 0.943
14 C 0.055 3.945
15 N -0.895 5.895
16 Si 0.889 3.111
17 H -0.274 1.274
18 H -0.288 1.288
19 H -0.286 1.286
20 C -0.090 4.090
21 H 0.021 0.979
22 H 0.040 0.960
23 H 0.125 0.875
24 H 0.044 0.956
25 H 0.049 0.951
26 H 0.049 0.951
27 H 0.047 0.953
28 H 0.052 0.948
29 H 0.045 0.955
30 H 0.088 0.912
31 H 0.043 0.957
32 H 0.080 0.920
33 H 0.034 0.966
34 H 0.029 0.971
35 H 0.359 0.641
36 H 0.322 0.678
37 H 0.024 0.976
38 H 0.032 0.968
39 H 0.256 0.744
40 H 0.055 0.945
41 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.118 9.301 -0.536 13.754
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.051 4.051
3 C -0.198 4.198
4 C -0.139 4.139
5 C -0.153 4.153
6 C -0.136 4.136
7 C 0.025 3.975
8 C -0.030 4.030
9 O -0.342 6.342
10 N -0.291 5.291
11 C 0.056 3.944
12 C -0.547 4.547
13 H 0.075 0.925
14 C -0.146 4.146
15 N -0.535 5.535
16 Si 0.717 3.283
17 H -0.199 1.199
18 H -0.214 1.214
19 H -0.213 1.213
20 C -0.128 4.128
21 H 0.040 0.960
22 H 0.059 0.941
23 H 0.143 0.857
24 H 0.064 0.936
25 H 0.068 0.932
26 H 0.069 0.931
27 H 0.065 0.935
28 H 0.071 0.929
29 H 0.064 0.936
30 H 0.107 0.893
31 H 0.062 0.938
32 H 0.098 0.902
33 H 0.052 0.948
34 H 0.048 0.952
35 H 0.204 0.796
36 H 0.139 0.861
37 H 0.041 0.959
38 H 0.050 0.950
39 H 0.066 0.934
40 H 0.073 0.927
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 9.758 9.412 0.729 13.578
hybrid contribution -0.458 -0.502 -1.468 1.618
sum 9.301 8.910 -0.739 12.901
Atomic orbital electron populations
1.22420 0.92844 1.05932 0.99434 1.20334 0.97516 0.92996 0.94286
1.21915 0.99953 0.96794 1.01134 1.21536 0.98948 0.96404 0.97009
1.21513 1.03309 0.94090 0.96432 1.21460 0.97889 1.00675 0.93543
1.20967 0.91135 0.92735 0.92688 1.23090 0.96941 0.83879 0.99129
1.87009 1.79457 1.20213 1.47495 1.61276 1.02351 1.21375 1.44062
1.19904 0.93273 0.83144 0.98032 1.21361 0.92591 0.92214 1.48561
0.92475 1.24937 0.98002 0.95596 0.96054 1.70001 1.35021 0.97041
1.51422 0.86594 0.86355 0.77892 0.77418 1.19863 1.21404 1.21270
1.21543 0.98910 0.94608 0.97780 0.95990 0.94112 0.85726 0.93648
0.93212 0.93140 0.93452 0.92876 0.93604 0.89329 0.93818 0.90177
0.94815 0.95235 0.79560 0.86139 0.95869 0.95016 0.93413 0.92655
0.92781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.45 7.06 37.16 0.26 -2.19 16
2 C -0.05 -0.74 0.77 -154.51 -0.12 -0.86 16
3 C -0.14 -1.72 8.44 37.16 0.31 -1.41 16
4 C -0.10 -1.47 4.73 -26.73 -0.13 -1.60 16
5 C -0.12 -1.98 5.59 -26.73 -0.15 -2.12 16
6 C -0.10 -1.75 4.08 -26.74 -0.11 -1.86 16
7 C 0.12 2.01 0.54 -131.60 -0.07 1.93 16
8 C 0.05 0.81 6.01 37.16 0.22 1.03 16
9 O -0.54 -10.04 9.37 -35.23 -0.33 -10.37 16
10 N -0.66 -13.32 1.65 -101.22 -0.17 -13.48 16
11 C 0.18 4.62 4.15 -4.97 -0.02 4.60 16
12 C -0.51 -14.29 9.37 -34.44 -0.32 -14.61 16
13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16
14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16
15 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16
16 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16
17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16
18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
20 C -0.09 -1.31 3.81 -26.74 -0.10 -1.41 16
21 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16
22 H 0.04 0.66 7.80 -51.93 -0.40 0.26 16
23 H 0.12 2.43 3.71 -51.93 -0.19 2.24 16
24 H 0.04 0.51 8.14 -51.94 -0.42 0.08 16
25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
30 H 0.09 1.76 5.89 -51.93 -0.31 1.45 16
31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
32 H 0.08 1.70 5.65 -51.93 -0.29 1.41 16
33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16
34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.36 5.11 9.12 45.56 0.42 5.53 16
36 H 0.32 6.43 8.50 -39.29 -0.33 6.10 16
37 H 0.02 0.65 5.58 -51.93 -0.29 0.36 16
38 H 0.03 0.89 5.87 -51.93 -0.30 0.59 16
39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
LS Contribution 301.06 15.07 4.54 4.54
Total: -1.00 -30.03 301.06 -6.89 -36.91
By element:
Atomic # 1 Polarization: 15.03 SS G_CDS: -6.33 Total: 8.70 kcal
Atomic # 6 Polarization: -16.70 SS G_CDS: -0.32 Total: -17.02 kcal
Atomic # 7 Polarization: -40.35 SS G_CDS: 0.57 Total: -39.78 kcal
Atomic # 8 Polarization: -10.04 SS G_CDS: -0.33 Total: -10.37 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -30.03 -6.89 -36.91 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000599597259.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.376 kcal
(2) G-P(sol) polarization free energy of solvation -30.025 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.402 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.289 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds