Wall clock time and date at job start Mon Mar 30 2020 03:21:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53004 * 109.47438 * 2 1
4 4 C 1.52999 * 109.46996 * 119.99574 * 2 1 3
5 5 C 1.53008 * 109.46727 * 60.00315 * 4 2 1
6 6 C 1.52994 * 109.47467 * 59.99675 * 5 4 2
7 7 C 1.52997 * 109.46946 * 300.00380 * 6 5 4
8 8 C 1.53008 * 109.46999 * 180.02562 * 7 6 5
9 9 O 1.42903 * 109.47205 * 55.50374 * 8 7 6
10 10 N 1.46900 * 109.47102 * 299.99321 * 7 6 5
11 11 C 1.46900 * 111.00169 * 303.37178 * 10 7 6
12 12 C 1.50704 * 109.47009 * 173.21622 * 11 10 7
13 13 H 1.07997 * 119.99809 * 0.02562 * 12 11 10
14 14 C 1.37877 * 119.99729 * 179.97438 * 12 11 10
15 15 N 1.31517 * 120.00432 * 0.02562 * 14 12 11
16 16 Si 1.86800 * 119.99937 * 180.02562 * 14 12 11
17 17 H 1.48508 * 109.46900 * 0.02562 * 16 14 12
18 18 H 1.48501 * 109.47282 * 119.99586 * 16 14 12
19 19 H 1.48497 * 109.47384 * 240.00226 * 16 14 12
20 20 C 1.52993 * 109.47607 * 59.99737 * 7 6 5
21 21 H 1.08999 * 109.46872 * 312.14124 * 1 2 3
22 22 H 1.09000 * 109.46954 * 72.13264 * 1 2 3
23 23 H 1.08993 * 109.47457 * 192.13874 * 1 2 3
24 24 H 1.08989 * 109.47309 * 179.97438 * 3 2 1
25 25 H 1.09001 * 109.46512 * 300.00162 * 3 2 1
26 26 H 1.09007 * 109.47055 * 59.99521 * 3 2 1
27 27 H 1.08996 * 109.47334 * 179.97438 * 4 2 1
28 28 H 1.08999 * 109.47474 * 300.00212 * 4 2 1
29 29 H 1.09003 * 109.46772 * 180.02562 * 5 4 2
30 30 H 1.09001 * 109.47014 * 299.99516 * 5 4 2
31 31 H 1.09001 * 109.47134 * 59.99914 * 6 5 4
32 32 H 1.08992 * 109.47393 * 180.02562 * 6 5 4
33 33 H 1.08998 * 109.47226 * 175.50963 * 8 7 6
34 34 H 1.09007 * 109.46561 * 295.50637 * 8 7 6
35 35 H 0.96699 * 113.99498 * 180.02562 * 9 8 7
36 36 H 1.00899 * 110.99956 * 179.41572 * 10 7 6
37 37 H 1.08999 * 109.47473 * 293.21722 * 11 10 7
38 38 H 1.08997 * 109.46947 * 53.21788 * 11 10 7
39 39 H 0.96989 * 120.00043 * 179.97438 * 15 14 12
40 40 H 1.08997 * 109.47496 * 179.97438 * 20 7 6
41 41 H 1.09001 * 109.47040 * 60.00119 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 1.5300 -2.1637 1.2493
6 6 2.0399 -2.8850 0.0001
7 6 1.5300 -2.1637 -1.2491
8 6 2.0395 -2.8854 -2.4984
9 8 1.6507 -4.2596 -2.4465
10 7 0.0610 -2.1637 -1.2492
11 6 -0.4655 -3.5328 -1.1687
12 6 -1.9627 -3.4863 -1.0034
13 1 -2.4722 -2.5349 -0.9627
14 6 -2.6821 -4.6584 -0.9051
15 7 -2.0617 -5.8170 -0.9552
16 14 -4.5380 -4.6008 -0.7010
17 1 -4.9894 -3.1863 -0.6743
18 1 -5.1832 -5.3044 -1.8385
19 1 -4.9169 -5.2659 0.5715
20 6 2.0400 -0.7213 -1.2492
21 1 -0.3633 0.6895 0.7620
22 1 -0.3633 0.3153 -0.9781
23 1 -0.3634 -1.0046 0.2161
24 1 3.1300 1.4425 0.0005
25 1 1.6767 1.9563 -0.8900
26 1 1.6767 1.9564 0.8900
27 1 3.1299 -0.7216 1.2491
28 1 1.6766 -0.2073 2.1393
29 1 1.8929 -2.6774 2.1395
30 1 0.4399 -2.1637 1.2493
31 1 3.1299 -2.8850 0.0001
32 1 1.6762 -3.9125 -0.0002
33 1 1.6120 -2.4201 -3.3866
34 1 3.1266 -2.8166 -2.5397
35 1 1.9410 -4.7794 -3.2085
36 1 -0.3005 -1.6844 -2.0601
37 1 -0.2175 -4.0719 -2.0830
38 1 -0.0213 -4.0431 -0.3141
39 1 -2.5678 -6.6414 -0.8857
40 1 1.6771 -0.2076 -2.1394
41 1 3.1300 -0.7213 -1.2492
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000599597259.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:10
Heat of formation + Delta-G solvation = -75.005466 kcal
Electronic energy + Delta-G solvation = -19357.335211 eV
Core-core repulsion = 16656.975904 eV
Total energy + Delta-G solvation = -2700.359307 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.18201 -37.79577 -35.76418 -34.45126 -33.11168 -31.53361 -28.22681 -27.40684
-27.07341 -26.41639 -23.64270 -22.82198 -20.24389 -19.38108 -18.33419 -17.95422
-16.76121 -16.49074 -16.02223 -15.83368 -15.25154 -14.95934 -14.55510 -14.23268
-13.96993 -13.55565 -13.37761 -13.19060 -13.04309 -12.78331 -12.62601 -12.52172
-12.41637 -12.27722 -12.07569 -11.78697 -11.68678 -11.51308 -11.18327 -10.95988
-10.89601 -10.72230 -10.57317 -10.40470 -8.45300 -8.05938 -6.14915 1.40250
1.41275 1.53960 2.45637 3.23450 3.38224 3.70655 3.91514 4.03846
4.13336 4.25618 4.37929 4.48886 4.58034 4.65149 4.67335 4.72621
4.86363 4.90683 5.03121 5.05627 5.07968 5.12685 5.24308 5.31911
5.33672 5.44484 5.57632 5.62196 5.66644 5.70907 5.71907 5.77147
5.88106 6.26557 6.31330 6.71998 6.95311 6.99574 7.14553 7.53158
9.02345
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.025463 B = 0.008157 C = 0.007082
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1099.379357 B = 3431.706440 C = 3952.520151
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.051 4.051
3 C -0.134 4.134
4 C -0.095 4.095
5 C -0.114 4.114
6 C -0.094 4.094
7 C 0.111 3.889
8 C 0.048 3.952
9 O -0.572 6.572
10 N -0.653 5.653
11 C 0.207 3.793
12 C -0.523 4.523
13 H 0.055 0.945
14 C 0.000 4.000
15 N -0.931 5.931
16 Si 0.958 3.042
17 H -0.266 1.266
18 H -0.281 1.281
19 H -0.283 1.283
20 C -0.084 4.084
21 H 0.025 0.975
22 H 0.037 0.963
23 H 0.091 0.909
24 H 0.062 0.938
25 H 0.054 0.946
26 H 0.053 0.947
27 H 0.068 0.932
28 H 0.059 0.941
29 H 0.048 0.952
30 H 0.052 0.948
31 H 0.066 0.934
32 H 0.034 0.966
33 H 0.041 0.959
34 H 0.059 0.941
35 H 0.375 0.625
36 H 0.323 0.677
37 H 0.001 0.999
38 H -0.002 1.002
39 H 0.258 0.742
40 H 0.064 0.936
41 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.103 11.393 -0.787 15.928
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.051 4.051
3 C -0.191 4.191
4 C -0.132 4.132
5 C -0.152 4.152
6 C -0.132 4.132
7 C 0.019 3.981
8 C -0.031 4.031
9 O -0.378 6.378
10 N -0.282 5.282
11 C 0.080 3.920
12 C -0.562 4.562
13 H 0.073 0.927
14 C -0.197 4.197
15 N -0.573 5.573
16 Si 0.784 3.216
17 H -0.190 1.190
18 H -0.207 1.207
19 H -0.210 1.210
20 C -0.121 4.121
21 H 0.044 0.956
22 H 0.056 0.944
23 H 0.110 0.890
24 H 0.081 0.919
25 H 0.073 0.927
26 H 0.072 0.928
27 H 0.087 0.913
28 H 0.078 0.922
29 H 0.067 0.933
30 H 0.071 0.929
31 H 0.085 0.915
32 H 0.053 0.947
33 H 0.059 0.941
34 H 0.077 0.923
35 H 0.223 0.777
36 H 0.140 0.860
37 H 0.018 0.982
38 H 0.016 0.984
39 H 0.066 0.934
40 H 0.083 0.917
41 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 10.758 11.525 0.467 15.772
hybrid contribution -0.721 -1.170 -1.379 1.947
sum 10.037 10.355 -0.912 14.450
Atomic orbital electron populations
1.22291 0.94846 1.03887 0.99288 1.20340 0.95824 0.94793 0.94155
1.21832 1.01011 0.94626 1.01665 1.21495 1.00092 0.94120 0.97502
1.21448 1.01096 0.96351 0.96284 1.21383 0.99030 0.98261 0.94487
1.21167 0.89014 0.95038 0.92893 1.23143 0.98666 0.82683 0.98656
1.86951 1.80272 1.21744 1.48830 1.61193 1.04801 1.18089 1.44132
1.19388 0.91894 0.85379 0.95327 1.21765 0.94287 0.92140 1.48042
0.92710 1.25798 1.02921 0.95236 0.95793 1.70140 1.36912 0.97699
1.52512 0.85510 0.80469 0.78213 0.77415 1.18971 1.20707 1.20951
1.21526 1.00264 0.92106 0.98246 0.95566 0.94394 0.89025 0.91884
0.92675 0.92751 0.91302 0.92219 0.93288 0.92904 0.91536 0.94684
0.94125 0.92308 0.77674 0.86028 0.98157 0.98420 0.93351 0.91699
0.90306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.66 7.06 71.98 0.51 -4.15 16
2 C -0.05 -1.33 0.77 -52.18 -0.04 -1.37 16
3 C -0.13 -2.74 8.44 71.98 0.61 -2.14 16
4 C -0.09 -2.52 4.73 30.60 0.14 -2.38 16
5 C -0.11 -3.90 5.59 30.60 0.17 -3.73 16
6 C -0.09 -3.35 4.08 30.59 0.12 -3.22 16
7 C 0.11 3.70 0.54 3.53 0.00 3.70 16
8 C 0.05 1.50 6.01 71.98 0.43 1.93 16
9 O -0.57 -21.75 9.37 -148.98 -1.40 -23.15 16
10 N -0.65 -26.80 1.65 -474.15 -0.78 -27.58 16
11 C 0.21 10.99 4.15 85.56 0.35 11.34 16
12 C -0.52 -30.33 9.37 25.60 0.24 -30.09 16
13 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16
14 C 0.00 -0.02 5.46 84.65 0.46 0.45 16
15 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16
16 Si 0.96 45.97 29.54 68.60 2.03 48.00 16
17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16
18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16
19 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16
20 C -0.08 -2.17 3.81 30.59 0.12 -2.05 16
21 H 0.03 0.78 8.09 -2.39 -0.02 0.76 16
22 H 0.04 1.19 7.80 -2.39 -0.02 1.17 16
23 H 0.09 3.63 3.71 -2.39 -0.01 3.63 16
24 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16
25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16
26 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16
27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
30 H 0.05 2.19 5.89 -2.39 -0.01 2.17 16
31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16
32 H 0.03 1.56 5.65 -2.39 -0.01 1.55 16
33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16
34 H 0.06 1.50 8.14 -2.38 -0.02 1.49 16
35 H 0.38 10.86 9.12 -74.06 -0.68 10.19 16
36 H 0.32 13.01 8.50 -89.69 -0.76 12.25 16
37 H 0.00 0.05 5.58 -2.39 -0.01 0.04 16
38 H 0.00 -0.14 5.87 -2.39 -0.01 -0.15 16
39 H 0.26 15.17 8.31 -92.72 -0.77 14.40 16
40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16
41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
Total: -1.00 -66.79 301.06 2.83 -63.96
By element:
Atomic # 1 Polarization: 28.63 SS G_CDS: -0.43 Total: 28.21 kcal
Atomic # 6 Polarization: -34.84 SS G_CDS: 3.12 Total: -31.72 kcal
Atomic # 7 Polarization: -84.80 SS G_CDS: -0.50 Total: -85.29 kcal
Atomic # 8 Polarization: -21.75 SS G_CDS: -1.40 Total: -23.15 kcal
Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal
Total: -66.79 2.83 -63.96 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000599597259.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.048 kcal
(2) G-P(sol) polarization free energy of solvation -66.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.839 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.957 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.005 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds