Wall clock time and date at job start Mon Mar 30 2020 04:40:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47246 * 2 1
4 4 C 1.52996 * 109.46794 * 119.99755 * 2 1 3
5 5 H 1.08997 * 110.46157 * 302.60738 * 4 2 1
6 6 C 1.54487 * 110.50982 * 65.35821 * 4 2 1
7 7 O 1.44426 * 104.80045 * 142.62231 * 6 4 2
8 8 C 1.44422 * 105.27817 * 319.48836 * 7 6 4
9 9 C 1.54479 * 104.80309 * 40.51152 * 8 7 6
10 10 H 1.09002 * 110.51245 * 217.37905 * 9 8 7
11 11 N 1.46898 * 110.62553 * 94.72254 * 9 8 7
12 12 C 1.46900 * 111.00570 * 309.43174 * 11 9 8
13 13 C 1.46904 * 110.99705 * 73.38977 * 11 9 8
14 14 C 1.53006 * 109.46863 * 169.99956 * 13 11 9
15 15 C 1.50703 * 109.46857 * 180.02562 * 14 13 11
16 16 H 1.08000 * 119.99907 * 359.97438 * 15 14 13
17 17 C 1.37878 * 120.00017 * 179.97438 * 15 14 13
18 18 N 1.31518 * 119.99959 * 179.97438 * 17 15 14
19 19 Si 1.86798 * 119.99813 * 359.97438 * 17 15 14
20 20 H 1.48501 * 109.47453 * 89.99985 * 19 17 15
21 21 H 1.48509 * 109.46784 * 210.00136 * 19 17 15
22 22 H 1.48505 * 109.47027 * 329.99747 * 19 17 15
23 23 H 1.09007 * 109.46673 * 60.00087 * 1 2 3
24 24 H 1.09001 * 109.47352 * 179.97438 * 1 2 3
25 25 H 1.08999 * 109.47265 * 300.00575 * 1 2 3
26 26 H 1.08998 * 109.46774 * 239.99611 * 2 1 3
27 27 H 1.08999 * 109.47220 * 180.02562 * 3 2 1
28 28 H 1.08999 * 109.47036 * 299.99903 * 3 2 1
29 29 H 1.09005 * 109.47038 * 59.99668 * 3 2 1
30 30 H 1.09000 * 110.37190 * 261.45422 * 6 4 2
31 31 H 1.08994 * 110.37314 * 23.68291 * 6 4 2
32 32 H 1.09003 * 110.37061 * 281.68202 * 8 7 6
33 33 H 1.08995 * 110.37431 * 159.34705 * 8 7 6
34 34 H 1.08998 * 109.46352 * 59.99924 * 12 11 9
35 35 H 1.08994 * 109.47415 * 179.97438 * 12 11 9
36 36 H 1.09000 * 109.46930 * 300.00410 * 12 11 9
37 37 H 1.09003 * 109.47045 * 289.99478 * 13 11 9
38 38 H 1.08995 * 109.47512 * 50.00096 * 13 11 9
39 39 H 1.08997 * 109.47241 * 299.99354 * 14 13 11
40 40 H 1.08997 * 109.47627 * 60.00077 * 14 13 11
41 41 H 0.97000 * 119.99755 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0399 -0.7212 1.2493
5 1 1.6481 -0.2475 2.1493
6 6 1.6515 -2.2159 1.2078
7 8 2.7844 -2.9074 1.7773
8 6 3.9470 -2.2367 1.2441
9 6 3.5847 -0.7353 1.2736
10 1 3.9852 -0.2284 0.3956
11 7 4.0859 -0.1062 2.5028
12 6 3.6844 -0.8743 3.6889
13 6 5.5446 0.0600 2.4522
14 6 5.9993 0.9338 3.6230
15 6 7.4957 1.1048 3.5706
16 1 8.0654 0.6367 2.7815
17 6 8.1374 1.8588 4.5302
18 7 9.4433 2.0076 4.4848
19 14 7.1518 2.6690 5.8946
20 1 7.0484 1.7406 7.0490
21 1 7.8327 3.9174 6.3228
22 1 5.7908 2.9933 5.3967
23 1 -0.3633 0.5139 -0.8901
24 1 -0.3634 -1.0277 -0.0005
25 1 -0.3634 0.5139 0.8899
26 1 1.8933 -0.5139 -0.8899
27 1 3.1300 1.4424 -0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.6766 1.9563 0.8900
30 1 0.7585 -2.3926 1.8073
31 1 1.4869 -2.5367 0.1793
32 1 4.1362 -2.5613 0.2208
33 1 4.8173 -2.4296 1.8713
34 1 4.0902 -1.8837 3.6224
35 1 4.0688 -0.3869 4.5848
36 1 2.5966 -0.9226 3.7394
37 1 6.0241 -0.9166 2.5200
38 1 5.8235 0.5373 1.5129
39 1 5.5199 1.9103 3.5552
40 1 5.7204 0.4565 4.5624
41 1 9.8948 2.5378 5.1600
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000688179613.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:33
Heat of formation + Delta-G solvation = -55.224500 kcal
Electronic energy + Delta-G solvation = -18479.006081 eV
Core-core repulsion = 15779.504542 eV
Total energy + Delta-G solvation = -2699.501540 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.28800 -36.32852 -35.75491 -32.95142 -30.68390 -29.13327 -28.54753 -27.06587
-26.05543 -23.86695 -22.83406 -21.06673 -19.68739 -19.42099 -16.96231 -16.42119
-16.12725 -15.52551 -14.81414 -14.36808 -14.23712 -14.02362 -13.42171 -13.25134
-13.10227 -12.65703 -12.50642 -12.24346 -12.05369 -11.76874 -11.54308 -11.37855
-11.27263 -11.00182 -10.92700 -10.80756 -10.62937 -10.43172 -9.97508 -9.89760
-9.71795 -9.64946 -9.19474 -8.51579 -7.77137 -6.03528 -4.01538 3.32966
3.40393 3.46500 3.98132 4.26261 4.47380 4.55275 4.76042 4.82590
5.01175 5.17915 5.23409 5.29731 5.31041 5.35100 5.54775 5.60772
5.64417 5.72120 5.76717 5.80624 5.83690 5.86313 5.96624 6.02869
6.08399 6.25002 6.32806 6.34716 6.40354 6.42927 6.75067 6.78780
7.18343 7.31887 7.59539 7.65329 7.86091 8.53773 9.00471 9.59202
11.09873
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.031742 B = 0.005688 C = 0.005363
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 881.897284 B = 4921.292685 C = 5219.250180
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.084 4.084
3 C -0.145 4.145
4 C -0.111 4.111
5 H 0.094 0.906
6 C 0.048 3.952
7 O -0.373 6.373
8 C 0.012 3.988
9 C 0.056 3.944
10 H 0.096 0.904
11 N -0.531 5.531
12 C 0.023 3.977
13 C 0.068 3.932
14 C -0.007 4.007
15 C -0.521 4.521
16 H 0.070 0.930
17 C 0.068 3.932
18 N -0.904 5.904
19 Si 0.879 3.121
20 H -0.278 1.278
21 H -0.288 1.288
22 H -0.263 1.263
23 H 0.053 0.947
24 H 0.052 0.948
25 H 0.056 0.944
26 H 0.067 0.933
27 H 0.062 0.938
28 H 0.048 0.952
29 H 0.057 0.943
30 H 0.086 0.914
31 H 0.056 0.944
32 H 0.057 0.943
33 H 0.094 0.906
34 H 0.030 0.970
35 H 0.070 0.930
36 H 0.058 0.942
37 H 0.027 0.973
38 H 0.066 0.934
39 H 0.024 0.976
40 H 0.012 0.988
41 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.750 -5.704 -8.430 20.461
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.103 4.103
3 C -0.203 4.203
4 C -0.130 4.130
5 H 0.112 0.888
6 C -0.029 4.029
7 O -0.292 6.292
8 C -0.067 4.067
9 C -0.053 4.053
10 H 0.113 0.887
11 N -0.253 5.253
12 C -0.125 4.125
13 C -0.058 4.058
14 C -0.044 4.044
15 C -0.559 4.559
16 H 0.088 0.912
17 C -0.133 4.133
18 N -0.543 5.543
19 Si 0.707 3.293
20 H -0.204 1.204
21 H -0.214 1.214
22 H -0.187 1.187
23 H 0.073 0.927
24 H 0.071 0.929
25 H 0.075 0.925
26 H 0.085 0.915
27 H 0.081 0.919
28 H 0.067 0.933
29 H 0.077 0.923
30 H 0.104 0.896
31 H 0.074 0.926
32 H 0.075 0.925
33 H 0.112 0.888
34 H 0.049 0.951
35 H 0.089 0.911
36 H 0.076 0.924
37 H 0.045 0.955
38 H 0.084 0.916
39 H 0.043 0.957
40 H 0.030 0.970
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -17.805 -5.320 -8.147 20.291
hybrid contribution 0.087 -0.202 0.555 0.597
sum -17.718 -5.521 -7.593 20.052
Atomic orbital electron populations
1.21862 0.95282 1.01461 1.01858 1.21086 0.95492 0.96838 0.96864
1.21839 1.01916 0.95100 1.01414 1.22687 0.95009 0.95559 0.99710
0.88785 1.23496 0.90289 0.90860 0.98257 1.89120 1.14960 1.55912
1.69209 1.24123 0.90105 0.93484 0.98979 1.23191 0.94551 0.92474
0.95122 0.88651 1.62323 1.14364 1.47794 1.00852 1.22396 1.00209
0.96162 0.93746 1.22167 0.83588 0.98821 1.01248 1.19566 0.96634
0.95306 0.92921 1.21085 0.90369 1.31772 1.12721 0.91176 1.24987
0.94723 0.95906 0.97704 1.69918 1.08061 1.40799 1.35561 0.86777
0.80987 0.79101 0.82468 1.20378 1.21443 1.18738 0.92741 0.92889
0.92526 0.91467 0.91856 0.93255 0.92339 0.89553 0.92565 0.92470
0.88824 0.95134 0.91117 0.92350 0.95522 0.91591 0.95745 0.96989
0.92750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.22 9.03 37.16 0.34 -0.88 16
2 C -0.08 -0.82 2.25 -90.62 -0.20 -1.03 16
3 C -0.15 -1.57 8.94 37.16 0.33 -1.24 16
4 C -0.11 -1.28 1.84 -89.05 -0.16 -1.44 16
5 H 0.09 1.20 6.77 -51.93 -0.35 0.85 16
6 C 0.05 0.53 6.27 37.94 0.24 0.77 16
7 O -0.37 -5.30 10.68 -35.23 -0.38 -5.68 16
8 C 0.01 0.16 6.22 37.93 0.24 0.39 16
9 C 0.06 0.78 2.30 -66.15 -0.15 0.63 16
10 H 0.10 1.29 6.26 -51.93 -0.32 0.97 16
11 N -0.53 -8.98 4.70 -233.00 -1.09 -10.08 16
12 C 0.02 0.38 8.22 60.06 0.49 0.87 16
13 C 0.07 1.37 4.60 -3.82 -0.02 1.35 16
14 C -0.01 -0.16 3.97 -27.88 -0.11 -0.27 16
15 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16
16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16
17 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16
18 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16
19 Si 0.88 22.01 27.47 -169.99 -4.67 17.35 16
20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16
21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16
22 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16
23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
24 H 0.05 0.40 7.45 -51.93 -0.39 0.01 16
25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
26 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16
27 H 0.06 0.77 6.52 -51.93 -0.34 0.43 16
28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
31 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16
32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
33 H 0.09 1.42 5.87 -51.93 -0.30 1.12 16
34 H 0.03 0.51 6.13 -51.93 -0.32 0.19 16
35 H 0.07 1.25 6.30 -51.93 -0.33 0.92 16
36 H 0.06 0.86 6.63 -51.93 -0.34 0.52 16
37 H 0.03 0.54 7.02 -51.93 -0.36 0.18 16
38 H 0.07 1.31 7.95 -51.93 -0.41 0.90 16
39 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16
40 H 0.01 0.29 5.90 -51.93 -0.31 -0.02 16
41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16
LS Contribution 307.40 15.07 4.63 4.63
Total: -1.00 -30.47 307.40 -7.28 -37.75
By element:
Atomic # 1 Polarization: 4.63 SS G_CDS: -7.10 Total: -2.48 kcal
Atomic # 6 Polarization: -14.75 SS G_CDS: 0.56 Total: -14.20 kcal
Atomic # 7 Polarization: -37.05 SS G_CDS: -0.32 Total: -37.37 kcal
Atomic # 8 Polarization: -5.30 SS G_CDS: -0.38 Total: -5.68 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.35 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -30.47 -7.28 -37.75 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000688179613.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.477 kcal
(2) G-P(sol) polarization free energy of solvation -30.466 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.943 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.747 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.225 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds