Wall clock time and date at job start Mon Mar 30 2020 04:40:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47246 * 2 1
4 4 C 1.52996 * 109.46794 * 119.99755 * 2 1 3
5 5 H 1.08997 * 110.46157 * 302.60738 * 4 2 1
6 6 C 1.54487 * 110.50982 * 65.35821 * 4 2 1
7 7 O 1.44426 * 104.80045 * 142.62231 * 6 4 2
8 8 C 1.44422 * 105.27817 * 319.48836 * 7 6 4
9 9 C 1.54479 * 104.80309 * 40.51152 * 8 7 6
10 10 H 1.09002 * 110.51245 * 217.37905 * 9 8 7
11 11 N 1.46898 * 110.62553 * 94.72254 * 9 8 7
12 12 C 1.46900 * 111.00570 * 309.43174 * 11 9 8
13 13 C 1.46904 * 110.99705 * 73.38977 * 11 9 8
14 14 C 1.53006 * 109.46863 * 169.99956 * 13 11 9
15 15 C 1.50703 * 109.46857 * 180.02562 * 14 13 11
16 16 H 1.08000 * 119.99907 * 359.97438 * 15 14 13
17 17 C 1.37878 * 120.00017 * 179.97438 * 15 14 13
18 18 N 1.31518 * 119.99959 * 179.97438 * 17 15 14
19 19 Si 1.86798 * 119.99813 * 359.97438 * 17 15 14
20 20 H 1.48501 * 109.47453 * 89.99985 * 19 17 15
21 21 H 1.48509 * 109.46784 * 210.00136 * 19 17 15
22 22 H 1.48505 * 109.47027 * 329.99747 * 19 17 15
23 23 H 1.09007 * 109.46673 * 60.00087 * 1 2 3
24 24 H 1.09001 * 109.47352 * 179.97438 * 1 2 3
25 25 H 1.08999 * 109.47265 * 300.00575 * 1 2 3
26 26 H 1.08998 * 109.46774 * 239.99611 * 2 1 3
27 27 H 1.08999 * 109.47220 * 180.02562 * 3 2 1
28 28 H 1.08999 * 109.47036 * 299.99903 * 3 2 1
29 29 H 1.09005 * 109.47038 * 59.99668 * 3 2 1
30 30 H 1.09000 * 110.37190 * 261.45422 * 6 4 2
31 31 H 1.08994 * 110.37314 * 23.68291 * 6 4 2
32 32 H 1.09003 * 110.37061 * 281.68202 * 8 7 6
33 33 H 1.08995 * 110.37431 * 159.34705 * 8 7 6
34 34 H 1.08998 * 109.46352 * 59.99924 * 12 11 9
35 35 H 1.08994 * 109.47415 * 179.97438 * 12 11 9
36 36 H 1.09000 * 109.46930 * 300.00410 * 12 11 9
37 37 H 1.09003 * 109.47045 * 289.99478 * 13 11 9
38 38 H 1.08995 * 109.47512 * 50.00096 * 13 11 9
39 39 H 1.08997 * 109.47241 * 299.99354 * 14 13 11
40 40 H 1.08997 * 109.47627 * 60.00077 * 14 13 11
41 41 H 0.97000 * 119.99755 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0399 -0.7212 1.2493
5 1 1.6481 -0.2475 2.1493
6 6 1.6515 -2.2159 1.2078
7 8 2.7844 -2.9074 1.7773
8 6 3.9470 -2.2367 1.2441
9 6 3.5847 -0.7353 1.2736
10 1 3.9852 -0.2284 0.3956
11 7 4.0859 -0.1062 2.5028
12 6 3.6844 -0.8743 3.6889
13 6 5.5446 0.0600 2.4522
14 6 5.9993 0.9338 3.6230
15 6 7.4957 1.1048 3.5706
16 1 8.0654 0.6367 2.7815
17 6 8.1374 1.8588 4.5302
18 7 9.4433 2.0076 4.4848
19 14 7.1518 2.6690 5.8946
20 1 7.0484 1.7406 7.0490
21 1 7.8327 3.9174 6.3228
22 1 5.7908 2.9933 5.3967
23 1 -0.3633 0.5139 -0.8901
24 1 -0.3634 -1.0277 -0.0005
25 1 -0.3634 0.5139 0.8899
26 1 1.8933 -0.5139 -0.8899
27 1 3.1300 1.4424 -0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.6766 1.9563 0.8900
30 1 0.7585 -2.3926 1.8073
31 1 1.4869 -2.5367 0.1793
32 1 4.1362 -2.5613 0.2208
33 1 4.8173 -2.4296 1.8713
34 1 4.0902 -1.8837 3.6224
35 1 4.0688 -0.3869 4.5848
36 1 2.5966 -0.9226 3.7394
37 1 6.0241 -0.9166 2.5200
38 1 5.8235 0.5373 1.5129
39 1 5.5199 1.9103 3.5552
40 1 5.7204 0.4565 4.5624
41 1 9.8948 2.5378 5.1600
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000688179613.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:32
Heat of formation + Delta-G solvation = -75.627867 kcal
Electronic energy + Delta-G solvation = -18479.890838 eV
Core-core repulsion = 15779.504542 eV
Total energy + Delta-G solvation = -2700.386296 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.35776 -37.71875 -36.62098 -35.04048 -32.42784 -30.29578 -29.64073 -27.85512
-27.65746 -25.46941 -23.82697 -22.47021 -21.10138 -20.46317 -19.02822 -17.60741
-17.20107 -16.57193 -16.26219 -16.06546 -15.62706 -15.24546 -14.78358 -14.51187
-14.27143 -14.00786 -13.84377 -13.37908 -13.22069 -12.98815 -12.89270 -12.72594
-12.58292 -12.36586 -12.18666 -11.89848 -11.81214 -11.70546 -11.47409 -11.38798
-11.29276 -11.25222 -10.80125 -10.74597 -9.13999 -8.30527 -6.34381 1.35148
1.37258 1.50369 2.35840 2.93834 3.04602 3.05630 3.58840 3.83667
3.87911 4.14566 4.14611 4.27871 4.37520 4.42345 4.43246 4.53569
4.55924 4.63854 4.74651 4.79061 4.85309 4.90598 4.94000 4.96332
5.02017 5.10778 5.11189 5.21222 5.28257 5.35393 5.47057 5.51722
5.56423 5.62449 5.78743 6.11951 6.26161 6.30128 6.73190 7.30445
8.86188
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.031742 B = 0.005688 C = 0.005363
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 881.897284 B = 4921.292685 C = 5219.250180
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.079 4.079
3 C -0.144 4.144
4 C -0.102 4.102
5 H 0.084 0.916
6 C 0.048 3.952
7 O -0.392 6.392
8 C 0.015 3.985
9 C 0.053 3.947
10 H 0.098 0.902
11 N -0.533 5.533
12 C 0.028 3.972
13 C 0.082 3.918
14 C 0.001 3.999
15 C -0.532 4.532
16 H 0.033 0.967
17 C 0.008 3.992
18 N -0.950 5.950
19 Si 0.949 3.051
20 H -0.267 1.267
21 H -0.283 1.283
22 H -0.249 1.249
23 H 0.063 0.937
24 H 0.064 0.936
25 H 0.052 0.948
26 H 0.076 0.924
27 H 0.044 0.956
28 H 0.062 0.938
29 H 0.047 0.953
30 H 0.102 0.898
31 H 0.075 0.925
32 H 0.075 0.925
33 H 0.073 0.927
34 H 0.025 0.975
35 H 0.056 0.944
36 H 0.077 0.923
37 H 0.019 0.981
38 H 0.063 0.937
39 H 0.021 0.979
40 H 0.016 0.984
41 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.526 -5.818 -8.627 23.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.098 4.098
3 C -0.202 4.202
4 C -0.121 4.121
5 H 0.103 0.897
6 C -0.029 4.029
7 O -0.311 6.311
8 C -0.064 4.064
9 C -0.056 4.056
10 H 0.116 0.884
11 N -0.256 5.256
12 C -0.120 4.120
13 C -0.046 4.046
14 C -0.037 4.037
15 C -0.570 4.570
16 H 0.051 0.949
17 C -0.189 4.189
18 N -0.591 5.591
19 Si 0.772 3.228
20 H -0.192 1.192
21 H -0.208 1.208
22 H -0.172 1.172
23 H 0.082 0.918
24 H 0.083 0.917
25 H 0.072 0.928
26 H 0.095 0.905
27 H 0.063 0.937
28 H 0.081 0.919
29 H 0.067 0.933
30 H 0.120 0.880
31 H 0.093 0.907
32 H 0.093 0.907
33 H 0.091 0.909
34 H 0.044 0.956
35 H 0.075 0.925
36 H 0.096 0.904
37 H 0.037 0.963
38 H 0.081 0.919
39 H 0.039 0.961
40 H 0.034 0.966
41 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -20.604 -5.447 -8.361 22.893
hybrid contribution 0.978 -0.209 0.534 1.134
sum -19.626 -5.655 -7.826 21.872
Atomic orbital electron populations
1.21832 0.93720 1.02363 1.02205 1.21066 0.96696 0.95817 0.96199
1.21822 1.00695 0.96053 1.01605 1.22629 0.92830 0.96349 1.00291
0.89734 1.23682 0.89750 0.89868 0.99576 1.89104 1.15736 1.56438
1.69867 1.24045 0.89611 0.93244 0.99463 1.23303 0.96315 0.92425
0.93553 0.88411 1.62256 1.11879 1.48955 1.02487 1.22357 1.01277
0.95510 0.92887 1.21839 0.85898 0.97528 0.99330 1.19431 0.93522
0.95931 0.94812 1.21413 0.92709 1.31250 1.11667 0.94876 1.25940
0.95751 0.96623 1.00554 1.70061 1.10036 1.42042 1.36949 0.85673
0.79815 0.78180 0.79083 1.19238 1.20821 1.17226 0.91806 0.91716
0.92840 0.90535 0.93681 0.91891 0.93348 0.87993 0.90701 0.90681
0.90874 0.95603 0.92517 0.90403 0.96319 0.91888 0.96073 0.96576
0.92447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.91 9.03 71.98 0.65 -1.26 16
2 C -0.08 -1.34 2.25 -10.80 -0.02 -1.36 16
3 C -0.14 -2.86 8.94 71.98 0.64 -2.22 16
4 C -0.10 -2.11 1.84 -9.78 -0.02 -2.13 16
5 H 0.08 1.95 6.77 -2.39 -0.02 1.93 16
6 C 0.05 0.91 6.27 72.49 0.45 1.36 16
7 O -0.39 -10.34 10.68 -148.98 -1.59 -11.93 16
8 C 0.01 0.39 6.22 72.48 0.45 0.84 16
9 C 0.05 1.40 2.30 45.93 0.11 1.50 16
10 H 0.10 2.54 6.26 -2.39 -0.01 2.52 16
11 N -0.53 -17.62 4.70 -891.07 -4.19 -21.80 16
12 C 0.03 0.88 8.22 127.69 1.05 1.93 16
13 C 0.08 3.29 4.60 86.30 0.40 3.68 16
14 C 0.00 0.04 3.97 29.85 0.12 0.16 16
15 C -0.53 -31.21 9.66 25.60 0.25 -30.96 16
16 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16
17 C 0.01 0.49 5.47 84.65 0.46 0.95 16
18 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16
19 Si 0.95 45.28 27.47 68.60 1.88 47.16 16
20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16
22 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16
23 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16
24 H 0.06 0.72 7.45 -2.39 -0.02 0.70 16
25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16
26 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16
27 H 0.04 1.05 6.52 -2.39 -0.02 1.03 16
28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
29 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16
30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16
31 H 0.07 1.18 7.82 -2.39 -0.02 1.16 16
32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
33 H 0.07 2.22 5.87 -2.39 -0.01 2.21 16
34 H 0.03 0.84 6.13 -2.39 -0.01 0.82 16
35 H 0.06 1.94 6.30 -2.39 -0.02 1.93 16
36 H 0.08 2.15 6.63 -2.39 -0.02 2.14 16
37 H 0.02 0.78 7.02 -2.39 -0.02 0.76 16
38 H 0.06 2.55 7.95 -2.39 -0.02 2.53 16
39 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16
40 H 0.02 0.76 5.90 -2.39 -0.01 0.75 16
41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16
Total: -1.00 -65.90 307.40 1.87 -64.04
By element:
Atomic # 1 Polarization: 9.10 SS G_CDS: 0.93 Total: 10.03 kcal
Atomic # 6 Polarization: -32.04 SS G_CDS: 4.54 Total: -27.50 kcal
Atomic # 7 Polarization: -77.90 SS G_CDS: -3.89 Total: -81.79 kcal
Atomic # 8 Polarization: -10.34 SS G_CDS: -1.59 Total: -11.93 kcal
Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal
Total: -65.90 1.87 -64.04 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000688179613.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.593 kcal
(2) G-P(sol) polarization free energy of solvation -65.903 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.495 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.035 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.628 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds