Wall clock time and date at job start Mon Mar 30 2020 04:36:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46898 * 111.00308 * 2 1
4 4 C 1.52999 * 109.47157 * 65.56612 * 3 2 1
5 5 C 1.50705 * 115.54737 * 54.76983 * 4 3 2
6 6 H 1.07995 * 119.99804 * 215.51831 * 5 4 3
7 7 C 1.37870 * 119.99828 * 35.25070 * 5 4 3
8 8 N 1.31512 * 120.00417 * 15.29641 * 7 5 4
9 9 Si 1.86809 * 120.00174 * 195.29544 * 7 5 4
10 10 H 1.48497 * 109.46850 * 89.99859 * 9 7 5
11 11 H 1.48494 * 109.47110 * 210.00012 * 9 7 5
12 12 H 1.48502 * 109.46760 * 330.00079 * 9 7 5
13 13 C 1.52997 * 117.50350 * 200.44238 * 4 3 2
14 14 C 1.53003 * 117.50141 * 269.10853 * 4 3 2
15 15 C 1.46901 * 110.99590 * 236.04368 * 2 1 3
16 16 C 1.53001 * 109.47049 * 63.95827 * 15 2 1
17 17 C 1.52996 * 109.46839 * 183.95247 * 15 2 1
18 18 C 1.52998 * 109.47704 * 303.95671 * 15 2 1
19 19 C 1.52993 * 109.47199 * 180.02562 * 18 15 2
20 20 O 1.42905 * 109.47166 * 179.97438 * 19 18 15
21 21 H 1.09005 * 109.47103 * 62.01035 * 1 2 3
22 22 H 1.09000 * 109.47348 * 182.01482 * 1 2 3
23 23 H 1.09003 * 109.46967 * 302.01658 * 1 2 3
24 24 H 1.08999 * 109.46981 * 305.57124 * 3 2 1
25 25 H 1.09000 * 109.47147 * 185.56584 * 3 2 1
26 26 H 0.96998 * 120.00600 * 183.96084 * 8 7 5
27 27 H 1.08992 * 117.50369 * 215.00035 * 13 4 3
28 28 H 1.09006 * 117.49446 * 0.02679 * 13 4 3
29 29 H 1.09003 * 117.49528 * 359.97046 * 14 4 3
30 30 H 1.08995 * 117.50214 * 144.97143 * 14 4 3
31 31 H 1.09003 * 109.47073 * 59.99322 * 16 15 2
32 32 H 1.09003 * 109.47564 * 179.97438 * 16 15 2
33 33 H 1.08996 * 109.47054 * 299.99750 * 16 15 2
34 34 H 1.09008 * 109.47162 * 60.00638 * 17 15 2
35 35 H 1.09002 * 109.47132 * 180.02562 * 17 15 2
36 36 H 1.08994 * 109.47786 * 300.00585 * 17 15 2
37 37 H 1.09001 * 109.46630 * 300.00338 * 18 15 2
38 38 H 1.08996 * 109.46941 * 59.99918 * 18 15 2
39 39 H 1.09001 * 109.47595 * 299.99734 * 19 18 15
40 40 H 1.08996 * 109.47252 * 60.00095 * 19 18 15
41 41 H 0.96697 * 113.99905 * 179.97438 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6213 2.0614 1.3133
5 6 2.0403 1.3404 2.5686
6 1 1.4093 1.3703 3.4446
7 6 3.2265 0.6382 2.5970
8 7 4.1290 0.8337 1.6606
9 14 3.5518 -0.5910 3.9655
10 1 3.0566 -1.9298 3.5563
11 1 5.0113 -0.6625 4.2300
12 1 2.8460 -0.1576 5.1981
13 6 1.6390 3.5910 1.3378
14 6 0.3050 2.8403 1.3520
15 6 1.9954 -0.7661 -1.1376
16 6 1.5868 -0.0837 -2.4447
17 6 3.5216 -0.8264 -1.0492
18 6 1.4260 -2.1857 -1.1038
19 6 1.9747 -2.9836 -2.2883
20 8 1.4433 -4.3098 -2.2564
21 1 -0.3633 0.4823 -0.9075
22 1 -0.3634 -1.0270 0.0361
23 1 -0.3633 0.5449 0.8714
24 1 1.5677 1.9248 -0.8359
25 1 3.0806 1.3440 -0.0997
26 1 4.9382 0.2991 1.6477
27 1 1.9537 4.0760 2.2618
28 1 1.9169 4.1059 0.4181
29 1 -0.2942 2.8616 0.4417
30 1 -0.2580 2.8311 2.2853
31 1 1.9925 0.9277 -2.4687
32 1 1.9777 -0.6518 -3.2888
33 1 0.4996 -0.0406 -2.5076
34 1 3.8127 -1.3126 -0.1180
35 1 3.9122 -1.3945 -1.8936
36 1 3.9273 0.1849 -1.0733
37 1 1.7170 -2.6718 -0.1726
38 1 0.3387 -2.1426 -1.1668
39 1 1.6840 -2.4977 -3.2197
40 1 3.0620 -3.0267 -2.2249
41 1 1.7490 -4.8735 -2.9802
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000688310462.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:36:23
Heat of formation + Delta-G solvation = -15.335096 kcal
Electronic energy + Delta-G solvation = -19192.755976 eV
Core-core repulsion = 16494.984171 eV
Total energy + Delta-G solvation = -2697.771805 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-38.96620 -36.85868 -35.74519 -31.96771 -31.91016 -28.73180 -27.09726 -26.12247
-25.15570 -23.91007 -22.11158 -21.07400 -18.86727 -17.90036 -17.19634 -16.02412
-15.23936 -15.10099 -14.57831 -14.04319 -13.89500 -13.32319 -13.19920 -13.07418
-12.82736 -12.33716 -11.74660 -11.60279 -11.29725 -11.22119 -11.03533 -10.84164
-10.71185 -10.53722 -10.44394 -10.37981 -10.35383 -10.06016 -9.72784 -9.64303
-9.13381 -8.95658 -8.48345 -7.84165 -7.08623 -5.88937 -3.83771 3.42513
3.48178 3.52513 4.27748 4.56911 4.83312 5.18621 5.23565 5.40141
5.52406 5.57717 5.69210 5.71200 5.78968 6.00245 6.04525 6.15747
6.21200 6.29341 6.33291 6.42254 6.45841 6.53294 6.55663 6.64931
6.74758 6.78861 6.80313 6.96258 7.02046 7.12730 7.26853 7.41293
7.67692 7.70516 8.08405 8.25307 8.31523 8.63366 9.08233 9.75068
11.16759
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.020253 B = 0.009831 C = 0.007786
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1382.163408 B = 2847.483407 C = 3595.277045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.491 5.491
3 C 0.097 3.903
4 C 0.069 3.931
5 C -0.475 4.475
6 H 0.052 0.948
7 C 0.095 3.905
8 N -0.869 5.869
9 Si 0.880 3.120
10 H -0.279 1.279
11 H -0.292 1.292
12 H -0.279 1.279
13 C -0.207 4.207
14 C -0.219 4.219
15 C 0.114 3.886
16 C -0.183 4.183
17 C -0.130 4.130
18 C -0.107 4.107
19 C 0.074 3.926
20 O -0.577 6.577
21 H 0.006 0.994
22 H 0.052 0.948
23 H 0.076 0.924
24 H -0.012 1.012
25 H 0.120 0.880
26 H 0.256 0.744
27 H 0.076 0.924
28 H 0.060 0.940
29 H 0.062 0.938
30 H 0.072 0.928
31 H 0.058 0.942
32 H 0.051 0.949
33 H 0.051 0.949
34 H 0.066 0.934
35 H 0.037 0.963
36 H 0.069 0.931
37 H 0.076 0.924
38 H 0.066 0.934
39 H 0.043 0.957
40 H 0.049 0.951
41 H 0.373 0.627
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.516 -4.676 -9.127 10.559
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 N -0.214 5.214
3 C -0.029 4.029
4 C 0.068 3.932
5 C -0.512 4.512
6 H 0.070 0.930
7 C -0.109 4.109
8 N -0.506 5.506
9 Si 0.708 3.292
10 H -0.205 1.205
11 H -0.219 1.219
12 H -0.204 1.204
13 C -0.246 4.246
14 C -0.256 4.256
15 C 0.023 3.977
16 C -0.242 4.242
17 C -0.188 4.188
18 C -0.144 4.144
19 C -0.004 4.004
20 O -0.382 6.382
21 H 0.025 0.975
22 H 0.071 0.929
23 H 0.095 0.905
24 H 0.006 0.994
25 H 0.138 0.862
26 H 0.066 0.934
27 H 0.095 0.905
28 H 0.078 0.922
29 H 0.080 0.920
30 H 0.090 0.910
31 H 0.077 0.923
32 H 0.070 0.930
33 H 0.070 0.930
34 H 0.085 0.915
35 H 0.056 0.944
36 H 0.088 0.912
37 H 0.094 0.906
38 H 0.084 0.916
39 H 0.061 0.939
40 H 0.067 0.933
41 H 0.219 0.781
Dipole moment (debyes) X Y Z Total
from point charges -2.434 -4.689 -8.166 9.726
hybrid contribution 0.031 -0.363 -0.591 0.694
sum -2.403 -5.052 -8.757 10.392
Atomic orbital electron populations
1.22473 0.89711 1.00408 0.99982 1.61943 1.05603 1.15286 1.38523
1.21832 1.03016 0.85104 0.92999 1.18941 0.91663 0.87513 0.95052
1.20241 1.04152 1.31010 0.95747 0.92965 1.24622 0.94997 0.95738
0.95500 1.69899 1.07977 1.38122 1.34630 0.86814 0.76667 0.82995
0.82694 1.20473 1.21853 1.20430 1.22972 1.01373 1.00374 0.99872
1.22952 0.91620 1.11424 0.99636 1.20879 0.95804 0.92107 0.88895
1.22595 1.01188 1.01529 0.98892 1.21868 0.93370 1.02795 1.00738
1.21562 1.00621 0.94308 0.97948 1.22412 0.97174 0.82254 0.98561
1.86495 1.73687 1.24267 1.53735 0.97548 0.92909 0.90497 0.99427
0.86228 0.93378 0.90542 0.92174 0.91987 0.90961 0.92296 0.93029
0.92969 0.91538 0.94370 0.91232 0.90553 0.91562 0.93871 0.93317
0.78129
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.44 8.42 60.07 0.51 0.94 16
2 N -0.49 -10.28 4.20 -227.16 -0.95 -11.23 16
3 C 0.10 2.20 3.24 -3.83 -0.01 2.18 16
4 C 0.07 1.68 1.36 -155.66 -0.21 1.47 16
5 C -0.47 -12.78 8.72 -34.44 -0.30 -13.08 16
6 H 0.05 1.45 7.86 -52.49 -0.41 1.04 16
7 C 0.09 2.51 5.11 -17.82 -0.09 2.42 16
8 N -0.87 -22.91 10.89 55.43 0.60 -22.31 16
9 Si 0.88 21.28 29.57 -169.99 -5.03 16.25 16
10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
13 C -0.21 -4.76 9.96 -26.69 -0.27 -5.03 16
14 C -0.22 -4.80 8.22 -26.69 -0.22 -5.02 16
15 C 0.11 2.02 0.48 -131.60 -0.06 1.95 16
16 C -0.18 -2.88 7.43 37.16 0.28 -2.60 16
17 C -0.13 -2.37 7.84 37.16 0.29 -2.07 16
18 C -0.11 -1.77 4.28 -26.74 -0.11 -1.89 16
19 C 0.07 1.01 6.34 37.15 0.24 1.25 16
20 O -0.58 -7.79 13.66 -35.23 -0.48 -8.27 16
21 H 0.01 0.11 6.50 -51.93 -0.34 -0.23 16
22 H 0.05 0.94 6.12 -51.93 -0.32 0.63 16
23 H 0.08 1.59 6.01 -51.93 -0.31 1.28 16
24 H -0.01 -0.27 6.78 -51.93 -0.35 -0.62 16
25 H 0.12 2.93 3.77 -51.93 -0.20 2.73 16
26 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16
27 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16
28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
30 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16
31 H 0.06 0.98 6.62 -51.93 -0.34 0.63 16
32 H 0.05 0.70 6.43 -51.93 -0.33 0.36 16
33 H 0.05 0.81 6.54 -51.93 -0.34 0.47 16
34 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16
35 H 0.04 0.57 6.43 -51.93 -0.33 0.24 16
36 H 0.07 1.37 6.21 -51.93 -0.32 1.05 16
37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16
38 H 0.07 1.10 6.30 -51.93 -0.33 0.78 16
39 H 0.04 0.53 6.43 -51.93 -0.33 0.20 16
40 H 0.05 0.64 6.43 -51.93 -0.33 0.31 16
41 H 0.37 3.08 9.12 45.56 0.42 3.49 16
LS Contribution 305.76 15.07 4.61 4.61
Total: -1.00 -28.08 305.76 -7.07 -35.15
By element:
Atomic # 1 Polarization: 11.13 SS G_CDS: -5.85 Total: 5.27 kcal
Atomic # 6 Polarization: -19.51 SS G_CDS: 0.03 Total: -19.48 kcal
Atomic # 7 Polarization: -33.19 SS G_CDS: -0.35 Total: -33.54 kcal
Atomic # 8 Polarization: -7.79 SS G_CDS: -0.48 Total: -8.27 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal
Total LS contribution 4.61 Total: 4.61 kcal
Total: -28.08 -7.07 -35.15 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000688310462.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.815 kcal
(2) G-P(sol) polarization free energy of solvation -28.077 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.263 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.150 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.335 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds