Wall clock time and date at job start Mon Mar 30 2020 04:56:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52999 * 109.47124 * 2 1
4 4 C 1.53004 * 109.47481 * 239.99759 * 2 1 3
5 5 N 1.46902 * 109.47507 * 119.99822 * 2 1 3
6 6 C 1.46906 * 110.99858 * 324.45121 * 5 2 1
7 7 C 1.53007 * 109.46533 * 284.23200 * 6 5 2
8 8 O 1.42897 * 109.47322 * 85.58198 * 7 6 5
9 9 C 1.46907 * 111.00133 * 88.39718 * 5 2 1
10 10 C 1.53000 * 109.47212 * 172.17056 * 9 5 2
11 11 C 1.50703 * 115.55090 * 305.95220 * 10 9 5
12 12 H 1.08001 * 119.99965 * 1.53375 * 11 10 9
13 13 C 1.37877 * 119.99755 * 181.25551 * 11 10 9
14 14 N 1.31517 * 120.00169 * 0.27844 * 13 11 10
15 15 Si 1.86804 * 119.99588 * 180.27259 * 13 11 10
16 16 H 1.48499 * 109.47113 * 60.00614 * 15 13 11
17 17 H 1.48505 * 109.46564 * 180.02562 * 15 13 11
18 18 H 1.48496 * 109.47241 * 300.00065 * 15 13 11
19 19 C 1.53003 * 117.49502 * 91.61940 * 10 9 5
20 20 C 1.52992 * 117.49658 * 160.27963 * 10 9 5
21 21 H 1.08998 * 109.47182 * 304.97413 * 1 2 3
22 22 H 1.08993 * 109.47200 * 64.98329 * 1 2 3
23 23 H 1.09004 * 109.46609 * 184.98014 * 1 2 3
24 24 H 1.09002 * 109.47405 * 195.39299 * 3 2 1
25 25 H 1.08995 * 109.47119 * 315.38738 * 3 2 1
26 26 H 1.08997 * 109.47201 * 75.39409 * 3 2 1
27 27 H 1.09003 * 109.46768 * 306.82257 * 4 2 1
28 28 H 1.09001 * 109.46916 * 66.81890 * 4 2 1
29 29 H 1.08998 * 109.47625 * 186.81691 * 4 2 1
30 30 H 1.08995 * 109.47306 * 44.22831 * 6 5 2
31 31 H 1.08995 * 109.46918 * 164.23419 * 6 5 2
32 32 H 1.08999 * 109.46852 * 205.58399 * 7 6 5
33 33 H 1.08999 * 109.47113 * 325.57676 * 7 6 5
34 34 H 0.96695 * 114.00339 * 184.37553 * 8 7 6
35 35 H 1.09002 * 109.46682 * 52.17059 * 9 5 2
36 36 H 1.09001 * 109.46882 * 292.17656 * 9 5 2
37 37 H 0.96993 * 119.99958 * 179.97438 * 14 13 11
38 38 H 1.09000 * 117.49852 * 215.00254 * 19 10 9
39 39 H 1.08994 * 117.49962 * 0.02677 * 19 10 9
40 40 H 1.09003 * 117.50053 * 359.97438 * 20 10 9
41 41 H 1.09003 * 117.50123 * 144.97392 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 7 2.0197 -0.6924 1.1994
6 6 1.1432 -0.4360 2.3501
7 6 1.3976 0.9766 2.8800
8 8 0.6044 1.9110 2.1454
9 6 2.1591 -2.1343 0.9550
10 6 2.8510 -2.7900 2.1517
11 6 4.1717 -2.1840 2.5512
12 1 4.5562 -1.3273 2.0176
13 6 4.8864 -2.7198 3.6015
14 7 4.4182 -3.7630 4.2512
15 14 6.5199 -1.9639 4.1015
16 1 6.3099 -0.5478 4.4959
17 1 7.0842 -2.7194 5.2487
18 1 7.4642 -2.0243 2.9570
19 6 1.9607 -3.3419 3.2670
20 6 2.6871 -4.3017 2.3213
21 1 -0.3633 0.5891 0.8421
22 1 -0.3633 0.4345 -0.9312
23 1 -0.3633 -1.0238 0.0892
24 1 3.0952 1.4548 -0.2728
25 1 1.4714 2.0289 -0.7217
26 1 1.9167 1.8714 0.9944
27 1 1.5805 -1.7077 -1.3123
28 1 1.7798 -0.1419 -2.1350
29 1 3.1232 -0.8282 -1.1903
30 1 0.1019 -0.5260 2.0409
31 1 1.3531 -1.1620 3.1356
32 1 1.1289 1.0226 3.9354
33 1 2.4526 1.2242 2.7627
34 1 0.7643 2.8347 2.3824
35 1 2.7564 -2.2945 0.0574
36 1 1.1723 -2.5767 0.8184
37 1 4.9212 -4.1401 4.9898
38 1 2.3304 -3.2668 4.2897
39 1 0.8823 -3.2383 3.1480
40 1 2.0861 -4.8290 1.5805
41 1 3.5348 -4.8581 2.7213
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000690947221.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:27
Heat of formation + Delta-G solvation = 6.396257 kcal
Electronic energy + Delta-G solvation = -19336.283287 eV
Core-core repulsion = 16639.453824 eV
Total energy + Delta-G solvation = -2696.829463 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.25446 -36.56658 -35.74017 -32.11207 -31.20026 -29.14028 -26.90043 -26.50674
-25.65763 -23.89491 -21.74546 -20.50801 -18.86967 -17.99134 -17.23341 -16.00867
-15.48479 -15.11272 -14.66130 -14.27570 -13.66311 -13.30835 -13.11017 -12.75101
-12.52298 -12.25091 -11.74945 -11.65127 -11.33772 -11.17299 -10.97598 -10.77640
-10.63289 -10.51292 -10.48044 -10.32009 -10.03293 -9.90588 -9.85662 -9.38194
-9.30936 -8.70778 -8.18493 -7.94514 -7.34664 -5.85023 -3.87260 3.35686
3.40399 3.43782 4.45892 4.48735 4.73155 5.19959 5.40936 5.45337
5.61477 5.73740 5.79377 5.90136 5.95074 5.98981 6.09424 6.18289
6.25003 6.33204 6.35805 6.40837 6.42543 6.52349 6.56681 6.68172
6.69591 6.78354 6.89450 6.99733 7.11731 7.31229 7.39645 7.77973
7.88262 7.96338 8.07102 8.16112 8.30092 8.67207 9.11556 9.66603
11.11324
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023943 B = 0.008668 C = 0.007988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1169.173468 B = 3229.667706 C = 3504.324663
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.106 3.894
3 C -0.152 4.152
4 C -0.147 4.147
5 N -0.505 5.505
6 C 0.044 3.956
7 C 0.078 3.922
8 O -0.566 6.566
9 C 0.097 3.903
10 C 0.026 3.974
11 C -0.447 4.447
12 H 0.067 0.933
13 C 0.051 3.949
14 N -0.887 5.887
15 Si 0.894 3.106
16 H -0.279 1.279
17 H -0.291 1.291
18 H -0.279 1.279
19 C -0.195 4.195
20 C -0.190 4.190
21 H 0.084 0.916
22 H 0.044 0.956
23 H 0.041 0.959
24 H 0.041 0.959
25 H 0.037 0.963
26 H 0.096 0.904
27 H 0.051 0.949
28 H 0.048 0.952
29 H 0.064 0.936
30 H 0.043 0.957
31 H 0.105 0.895
32 H 0.041 0.959
33 H 0.063 0.937
34 H 0.367 0.633
35 H 0.071 0.929
36 H 0.006 0.994
37 H 0.256 0.744
38 H 0.105 0.895
39 H 0.037 0.963
40 H 0.037 0.963
41 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.156 8.362 -4.946 11.502
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.017 3.983
3 C -0.209 4.209
4 C -0.205 4.205
5 N -0.228 5.228
6 C -0.084 4.084
7 C 0.000 4.000
8 O -0.372 6.372
9 C -0.030 4.030
10 C 0.025 3.975
11 C -0.484 4.484
12 H 0.085 0.915
13 C -0.148 4.148
14 N -0.526 5.526
15 Si 0.723 3.277
16 H -0.204 1.204
17 H -0.217 1.217
18 H -0.205 1.205
19 C -0.233 4.233
20 C -0.228 4.228
21 H 0.102 0.898
22 H 0.063 0.937
23 H 0.060 0.940
24 H 0.060 0.940
25 H 0.056 0.944
26 H 0.114 0.886
27 H 0.070 0.930
28 H 0.067 0.933
29 H 0.083 0.917
30 H 0.061 0.939
31 H 0.123 0.877
32 H 0.059 0.941
33 H 0.081 0.919
34 H 0.214 0.786
35 H 0.089 0.911
36 H 0.024 0.976
37 H 0.066 0.934
38 H 0.123 0.877
39 H 0.055 0.945
40 H 0.056 0.944
41 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -5.837 7.876 -4.957 10.985
hybrid contribution 0.229 0.321 0.409 0.569
sum -5.608 8.198 -4.548 10.924
Atomic orbital electron populations
1.22546 0.97644 1.00928 1.02289 1.20981 0.92080 0.95024 0.90266
1.22328 0.99192 0.94977 1.04425 1.22118 1.01945 0.99731 0.96662
1.62176 1.47743 1.10293 1.02612 1.22408 0.95188 0.95224 0.95548
1.22328 0.95085 0.89463 0.93103 1.86555 1.66694 1.18927 1.64997
1.21737 0.96216 0.85999 0.99090 1.18999 0.95083 0.91327 0.92103
1.20544 1.01457 1.12770 1.13662 0.91518 1.25038 0.97880 0.95237
0.96683 1.70010 1.37980 1.22741 1.21890 0.86628 0.84158 0.79134
0.77816 1.20446 1.21684 1.20476 1.22820 0.92670 1.08205 0.99612
1.22868 1.02997 0.95396 1.01545 0.89773 0.93701 0.94024 0.93951
0.94363 0.88603 0.92973 0.93318 0.91669 0.93923 0.87705 0.94092
0.91913 0.78647 0.91088 0.97574 0.93372 0.87654 0.94467 0.94440
0.86853
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.72 7.02 37.16 0.26 -2.46 16
2 C 0.11 1.75 0.74 -131.60 -0.10 1.65 16
3 C -0.15 -2.31 8.29 37.16 0.31 -2.00 16
4 C -0.15 -2.30 7.05 37.16 0.26 -2.04 16
5 N -0.50 -9.65 3.97 -218.96 -0.87 -10.52 16
6 C 0.04 0.81 5.03 -3.82 -0.02 0.79 16
7 C 0.08 1.20 6.36 37.16 0.24 1.43 16
8 O -0.57 -7.38 8.26 -35.23 -0.29 -7.67 16
9 C 0.10 2.03 3.81 -3.82 -0.01 2.02 16
10 C 0.03 0.63 1.67 -155.66 -0.26 0.37 16
11 C -0.45 -11.94 8.87 -34.44 -0.31 -12.24 16
12 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16
13 C 0.05 1.39 5.28 -17.82 -0.09 1.29 16
14 N -0.89 -24.56 8.59 55.43 0.48 -24.08 16
15 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16
16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
19 C -0.20 -4.78 7.45 -26.69 -0.20 -4.98 16
20 C -0.19 -4.74 9.38 -26.70 -0.25 -4.99 16
21 H 0.08 1.34 4.41 -51.93 -0.23 1.11 16
22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
23 H 0.04 0.67 7.58 -51.93 -0.39 0.28 16
24 H 0.04 0.66 8.05 -51.93 -0.42 0.25 16
25 H 0.04 0.52 8.05 -51.93 -0.42 0.11 16
26 H 0.10 1.42 3.13 -39.86 -0.12 1.30 16
27 H 0.05 0.82 6.92 -51.93 -0.36 0.46 16
28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.06 1.08 7.62 -51.93 -0.40 0.69 16
30 H 0.04 0.76 5.23 -51.93 -0.27 0.49 16
31 H 0.10 2.18 4.93 -51.93 -0.26 1.92 16
32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.06 1.04 7.57 -51.93 -0.39 0.65 16
34 H 0.37 3.19 9.11 58.49 0.53 3.72 16
35 H 0.07 1.49 5.69 -51.93 -0.30 1.19 16
36 H 0.01 0.13 7.72 -51.93 -0.40 -0.27 16
37 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16
38 H 0.11 2.85 6.40 -51.93 -0.33 2.51 16
39 H 0.04 0.84 7.92 -51.93 -0.41 0.43 16
40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16
41 H 0.11 3.12 6.17 -51.93 -0.32 2.80 16
LS Contribution 297.83 15.07 4.49 4.49
Total: -1.00 -27.91 297.83 -7.11 -35.02
By element:
Atomic # 1 Polarization: 13.46 SS G_CDS: -5.72 Total: 7.74 kcal
Atomic # 6 Polarization: -20.99 SS G_CDS: -0.17 Total: -21.17 kcal
Atomic # 7 Polarization: -34.20 SS G_CDS: -0.39 Total: -34.60 kcal
Atomic # 8 Polarization: -7.38 SS G_CDS: -0.29 Total: -7.67 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal
Total LS contribution 4.49 Total: 4.49 kcal
Total: -27.91 -7.11 -35.02 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000690947221.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.419 kcal
(2) G-P(sol) polarization free energy of solvation -27.909 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.510 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.023 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.396 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds