Wall clock time and date at job start Mon Mar 30 2020 04:56:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52999 * 109.47124 * 2 1
4 4 C 1.53004 * 109.47481 * 239.99759 * 2 1 3
5 5 N 1.46902 * 109.47507 * 119.99822 * 2 1 3
6 6 C 1.46906 * 110.99858 * 324.45121 * 5 2 1
7 7 C 1.53007 * 109.46533 * 284.23200 * 6 5 2
8 8 O 1.42897 * 109.47322 * 85.58198 * 7 6 5
9 9 C 1.46907 * 111.00133 * 88.39718 * 5 2 1
10 10 C 1.53000 * 109.47212 * 172.17056 * 9 5 2
11 11 C 1.50703 * 115.55090 * 305.95220 * 10 9 5
12 12 H 1.08001 * 119.99965 * 1.53375 * 11 10 9
13 13 C 1.37877 * 119.99755 * 181.25551 * 11 10 9
14 14 N 1.31517 * 120.00169 * 0.27844 * 13 11 10
15 15 Si 1.86804 * 119.99588 * 180.27259 * 13 11 10
16 16 H 1.48499 * 109.47113 * 60.00614 * 15 13 11
17 17 H 1.48505 * 109.46564 * 180.02562 * 15 13 11
18 18 H 1.48496 * 109.47241 * 300.00065 * 15 13 11
19 19 C 1.53003 * 117.49502 * 91.61940 * 10 9 5
20 20 C 1.52992 * 117.49658 * 160.27963 * 10 9 5
21 21 H 1.08998 * 109.47182 * 304.97413 * 1 2 3
22 22 H 1.08993 * 109.47200 * 64.98329 * 1 2 3
23 23 H 1.09004 * 109.46609 * 184.98014 * 1 2 3
24 24 H 1.09002 * 109.47405 * 195.39299 * 3 2 1
25 25 H 1.08995 * 109.47119 * 315.38738 * 3 2 1
26 26 H 1.08997 * 109.47201 * 75.39409 * 3 2 1
27 27 H 1.09003 * 109.46768 * 306.82257 * 4 2 1
28 28 H 1.09001 * 109.46916 * 66.81890 * 4 2 1
29 29 H 1.08998 * 109.47625 * 186.81691 * 4 2 1
30 30 H 1.08995 * 109.47306 * 44.22831 * 6 5 2
31 31 H 1.08995 * 109.46918 * 164.23419 * 6 5 2
32 32 H 1.08999 * 109.46852 * 205.58399 * 7 6 5
33 33 H 1.08999 * 109.47113 * 325.57676 * 7 6 5
34 34 H 0.96695 * 114.00339 * 184.37553 * 8 7 6
35 35 H 1.09002 * 109.46682 * 52.17059 * 9 5 2
36 36 H 1.09001 * 109.46882 * 292.17656 * 9 5 2
37 37 H 0.96993 * 119.99958 * 179.97438 * 14 13 11
38 38 H 1.09000 * 117.49852 * 215.00254 * 19 10 9
39 39 H 1.08994 * 117.49962 * 0.02677 * 19 10 9
40 40 H 1.09003 * 117.50053 * 359.97438 * 20 10 9
41 41 H 1.09003 * 117.50123 * 144.97392 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 7 2.0197 -0.6924 1.1994
6 6 1.1432 -0.4360 2.3501
7 6 1.3976 0.9766 2.8800
8 8 0.6044 1.9110 2.1454
9 6 2.1591 -2.1343 0.9550
10 6 2.8510 -2.7900 2.1517
11 6 4.1717 -2.1840 2.5512
12 1 4.5562 -1.3273 2.0176
13 6 4.8864 -2.7198 3.6015
14 7 4.4182 -3.7630 4.2512
15 14 6.5199 -1.9639 4.1015
16 1 6.3099 -0.5478 4.4959
17 1 7.0842 -2.7194 5.2487
18 1 7.4642 -2.0243 2.9570
19 6 1.9607 -3.3419 3.2670
20 6 2.6871 -4.3017 2.3213
21 1 -0.3633 0.5891 0.8421
22 1 -0.3633 0.4345 -0.9312
23 1 -0.3633 -1.0238 0.0892
24 1 3.0952 1.4548 -0.2728
25 1 1.4714 2.0289 -0.7217
26 1 1.9167 1.8714 0.9944
27 1 1.5805 -1.7077 -1.3123
28 1 1.7798 -0.1419 -2.1350
29 1 3.1232 -0.8282 -1.1903
30 1 0.1019 -0.5260 2.0409
31 1 1.3531 -1.1620 3.1356
32 1 1.1289 1.0226 3.9354
33 1 2.4526 1.2242 2.7627
34 1 0.7643 2.8347 2.3824
35 1 2.7564 -2.2945 0.0574
36 1 1.1723 -2.5767 0.8184
37 1 4.9212 -4.1401 4.9898
38 1 2.3304 -3.2668 4.2897
39 1 0.8823 -3.2383 3.1480
40 1 2.0861 -4.8290 1.5805
41 1 3.5348 -4.8581 2.7213
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000690947221.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:26
Heat of formation + Delta-G solvation = -11.191969 kcal
Electronic energy + Delta-G solvation = -19337.045970 eV
Core-core repulsion = 16639.453824 eV
Total energy + Delta-G solvation = -2697.592146 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.67172 -38.21341 -37.07268 -33.82993 -32.91512 -30.58801 -28.11546 -27.78307
-27.63380 -25.53141 -23.23747 -22.33247 -20.77625 -19.35434 -18.35830 -17.91282
-16.94684 -16.79086 -16.23905 -15.69154 -15.36945 -14.68712 -14.51512 -14.23798
-14.07779 -13.68246 -13.21057 -13.01674 -12.90557 -12.86727 -12.54197 -12.43120
-12.26237 -12.16514 -11.92922 -11.88543 -11.81442 -11.60190 -11.27276 -11.09024
-10.68141 -10.47988 -10.13664 -9.93856 -8.81389 -7.91184 -5.99245 1.46144
1.46720 1.54200 2.49669 3.00336 3.24231 3.60722 3.99266 4.13992
4.18592 4.29754 4.43310 4.50699 4.56730 4.60978 4.67030 4.73093
4.84861 4.86160 4.92256 4.98163 5.05221 5.11050 5.13125 5.21329
5.22929 5.29537 5.33425 5.42378 5.50595 5.64615 5.71723 5.80432
6.02808 6.22829 6.46007 6.64078 6.67586 7.02927 7.03729 7.56844
9.02790
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023943 B = 0.008668 C = 0.007988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1169.173468 B = 3229.667706 C = 3504.324663
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.101 3.899
3 C -0.149 4.149
4 C -0.145 4.145
5 N -0.516 5.516
6 C 0.044 3.956
7 C 0.091 3.909
8 O -0.565 6.565
9 C 0.108 3.892
10 C 0.022 3.978
11 C -0.459 4.459
12 H 0.059 0.941
13 C 0.008 3.992
14 N -0.907 5.907
15 Si 0.952 3.048
16 H -0.273 1.273
17 H -0.291 1.291
18 H -0.277 1.277
19 C -0.183 4.183
20 C -0.196 4.196
21 H 0.082 0.918
22 H 0.062 0.938
23 H 0.030 0.970
24 H 0.031 0.969
25 H 0.056 0.944
26 H 0.100 0.900
27 H 0.047 0.953
28 H 0.071 0.929
29 H 0.050 0.950
30 H 0.047 0.953
31 H 0.075 0.925
32 H 0.051 0.949
33 H 0.050 0.950
34 H 0.389 0.611
35 H 0.070 0.930
36 H 0.008 0.992
37 H 0.253 0.747
38 H 0.078 0.922
39 H 0.054 0.946
40 H 0.056 0.944
41 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.739 10.050 -5.789 13.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.012 3.988
3 C -0.206 4.206
4 C -0.202 4.202
5 N -0.240 5.240
6 C -0.084 4.084
7 C 0.013 3.987
8 O -0.374 6.374
9 C -0.019 4.019
10 C 0.021 3.979
11 C -0.497 4.497
12 H 0.077 0.923
13 C -0.190 4.190
14 N -0.546 5.546
15 Si 0.779 3.221
16 H -0.198 1.198
17 H -0.217 1.217
18 H -0.203 1.203
19 C -0.221 4.221
20 C -0.235 4.235
21 H 0.100 0.900
22 H 0.081 0.919
23 H 0.049 0.951
24 H 0.051 0.949
25 H 0.075 0.925
26 H 0.118 0.882
27 H 0.066 0.934
28 H 0.090 0.910
29 H 0.069 0.931
30 H 0.065 0.935
31 H 0.093 0.907
32 H 0.070 0.930
33 H 0.068 0.932
34 H 0.240 0.760
35 H 0.088 0.912
36 H 0.026 0.974
37 H 0.063 0.937
38 H 0.096 0.904
39 H 0.073 0.927
40 H 0.075 0.925
41 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -6.426 9.593 -5.806 12.924
hybrid contribution 0.380 -0.178 0.654 0.777
sum -6.046 9.415 -5.152 12.318
Atomic orbital electron populations
1.22443 0.96583 1.00381 1.03135 1.21137 0.92914 0.95507 0.89286
1.22314 0.98783 0.94234 1.05273 1.22090 1.00894 0.99914 0.97330
1.62163 1.48782 1.08971 1.04085 1.22346 0.95232 0.96379 0.94471
1.22004 0.94568 0.88516 0.93633 1.86480 1.65972 1.20299 1.64682
1.21517 0.95757 0.87378 0.97262 1.19127 0.94685 0.90875 0.93178
1.20725 1.02578 1.12624 1.13726 0.92304 1.25687 1.00777 0.95694
0.96841 1.70164 1.38871 1.23584 1.22026 0.85715 0.80636 0.78493
0.77291 1.19850 1.21732 1.20251 1.22602 0.93462 1.08024 0.98047
1.22777 1.02621 0.95808 1.02297 0.89983 0.91920 0.95082 0.94945
0.92537 0.88219 0.93390 0.91010 0.93111 0.93478 0.90650 0.93040
0.93210 0.76028 0.91209 0.97403 0.93720 0.90408 0.92724 0.92543
0.89602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.74 7.02 71.98 0.51 -4.23 16
2 C 0.10 3.11 0.74 3.53 0.00 3.11 16
3 C -0.15 -4.15 8.29 71.98 0.60 -3.55 16
4 C -0.14 -4.26 7.05 71.98 0.51 -3.75 16
5 N -0.52 -19.22 3.97 -846.67 -3.36 -22.58 16
6 C 0.04 1.55 5.03 86.30 0.43 1.98 16
7 C 0.09 2.64 6.36 71.98 0.46 3.10 16
8 O -0.57 -13.11 8.26 -148.98 -1.23 -14.34 16
9 C 0.11 4.51 3.81 86.30 0.33 4.84 16
10 C 0.02 1.08 1.67 -52.93 -0.09 1.00 16
11 C -0.46 -24.72 8.87 25.60 0.23 -24.49 16
12 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16
13 C 0.01 0.42 5.28 84.65 0.45 0.86 16
14 N -0.91 -51.14 8.59 21.45 0.18 -50.96 16
15 Si 0.95 43.75 29.54 68.60 2.03 45.78 16
16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
17 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16
18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
19 C -0.18 -9.07 7.45 30.62 0.23 -8.84 16
20 C -0.20 -9.91 9.38 30.62 0.29 -9.62 16
21 H 0.08 2.37 4.41 -2.39 -0.01 2.36 16
22 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16
23 H 0.03 0.93 7.58 -2.39 -0.02 0.91 16
24 H 0.03 0.95 8.05 -2.39 -0.02 0.93 16
25 H 0.06 1.36 8.05 -2.39 -0.02 1.34 16
26 H 0.10 2.70 3.13 5.25 0.02 2.71 16
27 H 0.05 1.43 6.92 -2.39 -0.02 1.41 16
28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
29 H 0.05 1.63 7.62 -2.39 -0.02 1.61 16
30 H 0.05 1.62 5.23 -2.39 -0.01 1.61 16
31 H 0.08 3.13 4.93 -2.39 -0.01 3.12 16
32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
33 H 0.05 1.58 7.57 -2.39 -0.02 1.57 16
34 H 0.39 5.43 9.11 -52.80 -0.48 4.95 16
35 H 0.07 2.89 5.69 -2.39 -0.01 2.88 16
36 H 0.01 0.32 7.72 -2.39 -0.02 0.30 16
37 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16
38 H 0.08 4.30 6.40 -2.39 -0.02 4.29 16
39 H 0.05 2.47 7.92 -2.39 -0.02 2.45 16
40 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16
41 H 0.09 4.84 6.17 -2.39 -0.01 4.82 16
Total: -1.00 -59.06 297.83 2.11 -56.95
By element:
Atomic # 1 Polarization: 24.19 SS G_CDS: 0.56 Total: 24.75 kcal
Atomic # 6 Polarization: -43.54 SS G_CDS: 3.93 Total: -39.60 kcal
Atomic # 7 Polarization: -70.36 SS G_CDS: -3.18 Total: -73.54 kcal
Atomic # 8 Polarization: -13.11 SS G_CDS: -1.23 Total: -14.34 kcal
Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal
Total: -59.06 2.11 -56.95 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000690947221.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.761 kcal
(2) G-P(sol) polarization free energy of solvation -59.063 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.302 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.953 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds