Wall clock time and date at job start Mon Mar 30 2020 04:53:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.46921 * 2 1
4 4 C 1.52994 * 109.46955 * 239.99885 * 2 1 3
5 5 O 1.42902 * 109.47581 * 60.00181 * 4 2 1
6 6 C 1.53006 * 109.47010 * 119.99843 * 2 1 3
7 7 N 1.46896 * 109.47118 * 309.52466 * 6 2 1
8 8 C 1.46849 * 110.99982 * 82.48074 * 7 6 2
9 9 C 1.53038 * 109.52295 * 174.16025 * 8 7 6
10 10 C 1.53119 * 109.27754 * 59.18177 * 9 8 7
11 11 C 1.53117 * 109.16157 * 302.34540 * 10 9 8
12 12 H 1.09001 * 109.50359 * 297.71131 * 11 10 9
13 13 C 1.50696 * 109.50164 * 177.63656 * 11 10 9
14 14 H 1.08004 * 119.99741 * 239.99911 * 13 11 10
15 15 C 1.37879 * 120.00322 * 60.00214 * 13 11 10
16 16 N 1.31513 * 119.99536 * 359.97438 * 15 13 11
17 17 Si 1.86800 * 119.99956 * 180.02562 * 15 13 11
18 18 H 1.48503 * 109.47259 * 90.00106 * 17 15 13
19 19 H 1.48504 * 109.46916 * 209.99555 * 17 15 13
20 20 H 1.48497 * 109.47169 * 329.99750 * 17 15 13
21 21 C 1.46851 * 111.00261 * 318.27789 * 7 6 2
22 22 H 1.08998 * 109.47385 * 307.02970 * 1 2 3
23 23 H 1.08997 * 109.46947 * 67.03581 * 1 2 3
24 24 H 1.09001 * 109.47129 * 187.03397 * 1 2 3
25 25 H 1.09000 * 109.47093 * 144.39338 * 3 2 1
26 26 H 1.09001 * 109.46938 * 264.39020 * 3 2 1
27 27 H 1.09000 * 109.47242 * 24.38842 * 3 2 1
28 28 H 1.09004 * 109.46987 * 180.02562 * 4 2 1
29 29 H 1.08998 * 109.47425 * 299.99680 * 4 2 1
30 30 H 0.96696 * 114.00320 * 179.97438 * 5 4 2
31 31 H 1.09001 * 109.46520 * 189.52552 * 6 2 1
32 32 H 1.09002 * 109.46716 * 69.52728 * 6 2 1
33 33 H 1.09000 * 109.46638 * 294.17734 * 8 7 6
34 34 H 1.09005 * 109.45827 * 54.15123 * 8 7 6
35 35 H 1.08997 * 109.50213 * 179.12611 * 9 8 7
36 36 H 1.09002 * 109.50486 * 299.19959 * 9 8 7
37 37 H 1.08992 * 109.52057 * 62.25603 * 10 9 8
38 38 H 1.09005 * 109.51944 * 182.37575 * 10 9 8
39 39 H 0.97003 * 119.99686 * 180.02562 * 16 15 13
40 40 H 1.08999 * 109.45815 * 305.85392 * 21 7 6
41 41 H 1.08998 * 109.46627 * 65.81941 * 21 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2492
5 8 1.5637 -0.0477 -2.4160
6 6 2.0400 -0.7212 1.2493
7 7 1.3723 -0.1738 2.4377
8 6 0.0523 -0.7881 2.6295
9 6 -0.5501 -0.3038 3.9503
10 6 -0.6763 1.2219 3.9190
11 6 0.7043 1.8353 3.6697
12 1 1.3721 1.5743 4.4907
13 6 0.5798 3.3344 3.5797
14 1 0.8777 3.8477 2.6773
15 6 0.0858 4.0507 4.6492
16 7 -0.2772 3.4256 5.7478
17 14 -0.0690 5.9089 4.5372
18 1 -1.4079 6.2627 4.0010
19 1 0.0952 6.5017 5.8889
20 1 0.9824 6.4397 3.6328
21 6 1.2703 1.2890 2.3571
22 1 -0.3634 0.6189 0.8204
23 1 -0.3633 0.4009 -0.9462
24 1 -0.3633 -1.0199 0.1258
25 1 2.9488 1.5066 0.5983
26 1 2.2558 1.7515 -1.0228
27 1 1.2787 2.0970 0.4243
28 1 3.1300 -0.7217 -1.2490
29 1 1.6767 -1.7489 -1.2492
30 1 1.8494 -0.4510 -3.2472
31 1 3.1167 -0.5763 1.3384
32 1 1.8222 -1.7862 1.1683
33 1 -0.6032 -0.5051 1.8059
34 1 0.1568 -1.8729 2.6542
35 1 -1.5364 -0.7479 4.0849
36 1 0.0976 -0.5991 4.7757
37 1 -1.3552 1.5148 3.1182
38 1 -1.0658 1.5748 4.8740
39 1 -0.6251 3.9295 6.5001
40 1 2.2594 1.7129 2.1838
41 1 0.6091 1.5623 1.5348
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000691480988.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:53:39
Heat of formation + Delta-G solvation = -25.631205 kcal
Electronic energy + Delta-G solvation = -19138.980672 eV
Core-core repulsion = 16440.762394 eV
Total energy + Delta-G solvation = -2698.218278 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.01893 -37.03378 -34.80359 -32.84555 -30.78981 -30.14192 -27.39000 -27.05138
-25.00810 -24.69205 -21.61034 -21.13654 -19.01464 -18.52690 -17.24639 -16.30246
-15.30133 -15.07885 -14.67943 -14.29407 -14.21787 -13.77217 -13.35612 -12.94620
-12.52770 -12.22765 -12.12043 -11.93741 -11.52180 -11.30052 -11.14063 -10.91992
-10.79853 -10.67439 -10.48558 -10.35650 -10.18437 -9.95334 -9.93206 -9.62749
-9.30600 -8.88105 -8.58679 -8.24328 -7.29996 -5.92240 -3.98115 3.33786
3.40608 3.43792 4.20761 4.46038 4.69422 4.92200 5.12486 5.20407
5.37793 5.47756 5.50841 5.66290 5.74753 5.86403 5.93028 6.02483
6.06359 6.16109 6.21302 6.25581 6.38947 6.43733 6.50545 6.59718
6.68356 6.73560 6.81740 6.95656 7.11150 7.29475 7.47977 7.60082
7.77232 7.81801 7.93702 8.16471 8.24788 8.55087 9.06696 9.66048
11.13676
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.028554 B = 0.007287 C = 0.006263
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 980.360074 B = 3841.687875 C = 4469.574234
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.093 4.093
3 C -0.154 4.154
4 C 0.090 3.910
5 O -0.568 6.568
6 C 0.065 3.935
7 N -0.530 5.530
8 C 0.035 3.965
9 C -0.118 4.118
10 C -0.110 4.110
11 C 0.051 3.949
12 H 0.030 0.970
13 C -0.512 4.512
14 H 0.053 0.947
15 C 0.063 3.937
16 N -0.889 5.889
17 Si 0.888 3.112
18 H -0.282 1.282
19 H -0.287 1.287
20 H -0.275 1.275
21 C 0.042 3.958
22 H 0.082 0.918
23 H 0.057 0.943
24 H 0.049 0.951
25 H 0.058 0.942
26 H 0.049 0.951
27 H 0.081 0.919
28 H 0.043 0.957
29 H 0.040 0.960
30 H 0.372 0.628
31 H 0.070 0.930
32 H 0.061 0.939
33 H 0.052 0.948
34 H 0.051 0.949
35 H 0.043 0.957
36 H 0.057 0.943
37 H 0.028 0.972
38 H 0.089 0.911
39 H 0.258 0.742
40 H 0.064 0.936
41 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.732 -9.209 -11.352 14.871
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.094 4.094
3 C -0.211 4.211
4 C 0.011 3.989
5 O -0.372 6.372
6 C -0.064 4.064
7 N -0.253 5.253
8 C -0.092 4.092
9 C -0.156 4.156
10 C -0.148 4.148
11 C 0.032 3.968
12 H 0.048 0.952
13 C -0.551 4.551
14 H 0.071 0.929
15 C -0.138 4.138
16 N -0.528 5.528
17 Si 0.716 3.284
18 H -0.208 1.208
19 H -0.213 1.213
20 H -0.200 1.200
21 C -0.084 4.084
22 H 0.101 0.899
23 H 0.076 0.924
24 H 0.068 0.932
25 H 0.077 0.923
26 H 0.068 0.932
27 H 0.100 0.900
28 H 0.061 0.939
29 H 0.058 0.942
30 H 0.218 0.782
31 H 0.088 0.912
32 H 0.080 0.920
33 H 0.070 0.930
34 H 0.070 0.930
35 H 0.062 0.938
36 H 0.076 0.924
37 H 0.047 0.953
38 H 0.107 0.893
39 H 0.068 0.932
40 H 0.082 0.918
41 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 2.676 -8.900 -10.276 13.855
hybrid contribution -0.282 0.716 -1.111 1.352
sum 2.394 -8.183 -11.388 14.226
Atomic orbital electron populations
1.22414 0.94434 1.01452 1.02836 1.21307 0.96764 0.97327 0.94046
1.22566 1.02111 0.95135 1.01291 1.22182 0.96865 0.94281 0.85558
1.86526 1.77479 1.57374 1.15854 1.22286 0.99059 0.97639 0.87428
1.62251 1.20382 1.07579 1.35058 1.22638 0.90526 0.97194 0.98882
1.21679 0.98198 0.99370 0.96331 1.21640 0.99878 0.90501 1.02785
1.18724 0.92599 0.93713 0.91771 0.95172 1.21160 1.42186 0.91772
0.99957 0.92885 1.24931 0.95499 0.98024 0.95393 1.69899 1.43634
1.35040 1.04200 0.86666 0.78355 0.86165 0.77225 1.20827 1.21309
1.19976 1.23237 1.00237 0.84390 1.00503 0.89926 0.92410 0.93233
0.92344 0.93160 0.90033 0.93891 0.94195 0.78220 0.91202 0.92048
0.92985 0.93006 0.93804 0.92435 0.95312 0.89286 0.93155 0.91781
0.93024
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.36 6.40 37.16 0.24 -2.13 16
2 C -0.09 -1.33 0.60 -154.51 -0.09 -1.42 16
3 C -0.15 -2.45 7.31 37.16 0.27 -2.18 16
4 C 0.09 1.05 5.84 37.15 0.22 1.27 16
5 O -0.57 -6.73 11.93 -35.23 -0.42 -7.15 16
6 C 0.06 0.97 4.91 -3.82 -0.02 0.95 16
7 N -0.53 -9.76 4.86 -234.67 -1.14 -10.90 16
8 C 0.04 0.62 4.77 -3.83 -0.02 0.60 16
9 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16
10 C -0.11 -2.63 5.02 -26.61 -0.13 -2.76 16
11 C 0.05 1.28 2.26 -91.70 -0.21 1.07 16
12 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16
13 C -0.51 -14.07 8.57 -34.44 -0.30 -14.37 16
14 H 0.05 1.44 7.75 -52.48 -0.41 1.03 16
15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16
16 N -0.89 -25.63 11.35 55.43 0.63 -25.00 16
17 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16
18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
20 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16
21 C 0.04 0.88 2.66 -3.83 -0.01 0.87 16
22 H 0.08 1.45 3.80 -51.93 -0.20 1.26 16
23 H 0.06 0.89 7.48 -51.93 -0.39 0.50 16
24 H 0.05 0.70 7.24 -51.93 -0.38 0.32 16
25 H 0.06 0.93 6.23 -51.93 -0.32 0.60 16
26 H 0.05 0.77 7.06 -51.93 -0.37 0.40 16
27 H 0.08 1.47 5.10 -51.93 -0.26 1.20 16
28 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16
29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.37 2.58 9.12 45.56 0.42 2.99 16
31 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16
32 H 0.06 0.82 7.72 -51.93 -0.40 0.42 16
33 H 0.05 0.90 3.75 -51.93 -0.19 0.70 16
34 H 0.05 0.82 7.92 -51.93 -0.41 0.41 16
35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16
36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16
37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16
38 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16
39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16
40 H 0.06 1.35 6.02 -51.93 -0.31 1.04 16
41 H 0.05 1.07 2.77 -51.93 -0.14 0.93 16
LS Contribution 291.89 15.07 4.40 4.40
Total: -1.00 -29.45 291.89 -7.63 -37.08
By element:
Atomic # 1 Polarization: 9.85 SS G_CDS: -5.77 Total: 4.08 kcal
Atomic # 6 Polarization: -18.66 SS G_CDS: -0.31 Total: -18.96 kcal
Atomic # 7 Polarization: -35.38 SS G_CDS: -0.51 Total: -35.89 kcal
Atomic # 8 Polarization: -6.73 SS G_CDS: -0.42 Total: -7.15 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal
Total LS contribution 4.40 Total: 4.40 kcal
Total: -29.45 -7.63 -37.08 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691480988.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.446 kcal
(2) G-P(sol) polarization free energy of solvation -29.446 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.999 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.631 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds