Wall clock time and date at job start Mon Mar 30 2020 04:53:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.46921 * 2 1
4 4 C 1.52994 * 109.46955 * 239.99885 * 2 1 3
5 5 O 1.42902 * 109.47581 * 60.00181 * 4 2 1
6 6 C 1.53006 * 109.47010 * 119.99843 * 2 1 3
7 7 N 1.46896 * 109.47118 * 309.52466 * 6 2 1
8 8 C 1.46849 * 110.99982 * 82.48074 * 7 6 2
9 9 C 1.53038 * 109.52295 * 174.16025 * 8 7 6
10 10 C 1.53119 * 109.27754 * 59.18177 * 9 8 7
11 11 C 1.53117 * 109.16157 * 302.34540 * 10 9 8
12 12 H 1.09001 * 109.50359 * 297.71131 * 11 10 9
13 13 C 1.50696 * 109.50164 * 177.63656 * 11 10 9
14 14 H 1.08004 * 119.99741 * 239.99911 * 13 11 10
15 15 C 1.37879 * 120.00322 * 60.00214 * 13 11 10
16 16 N 1.31513 * 119.99536 * 359.97438 * 15 13 11
17 17 Si 1.86800 * 119.99956 * 180.02562 * 15 13 11
18 18 H 1.48503 * 109.47259 * 90.00106 * 17 15 13
19 19 H 1.48504 * 109.46916 * 209.99555 * 17 15 13
20 20 H 1.48497 * 109.47169 * 329.99750 * 17 15 13
21 21 C 1.46851 * 111.00261 * 318.27789 * 7 6 2
22 22 H 1.08998 * 109.47385 * 307.02970 * 1 2 3
23 23 H 1.08997 * 109.46947 * 67.03581 * 1 2 3
24 24 H 1.09001 * 109.47129 * 187.03397 * 1 2 3
25 25 H 1.09000 * 109.47093 * 144.39338 * 3 2 1
26 26 H 1.09001 * 109.46938 * 264.39020 * 3 2 1
27 27 H 1.09000 * 109.47242 * 24.38842 * 3 2 1
28 28 H 1.09004 * 109.46987 * 180.02562 * 4 2 1
29 29 H 1.08998 * 109.47425 * 299.99680 * 4 2 1
30 30 H 0.96696 * 114.00320 * 179.97438 * 5 4 2
31 31 H 1.09001 * 109.46520 * 189.52552 * 6 2 1
32 32 H 1.09002 * 109.46716 * 69.52728 * 6 2 1
33 33 H 1.09000 * 109.46638 * 294.17734 * 8 7 6
34 34 H 1.09005 * 109.45827 * 54.15123 * 8 7 6
35 35 H 1.08997 * 109.50213 * 179.12611 * 9 8 7
36 36 H 1.09002 * 109.50486 * 299.19959 * 9 8 7
37 37 H 1.08992 * 109.52057 * 62.25603 * 10 9 8
38 38 H 1.09005 * 109.51944 * 182.37575 * 10 9 8
39 39 H 0.97003 * 119.99686 * 180.02562 * 16 15 13
40 40 H 1.08999 * 109.45815 * 305.85392 * 21 7 6
41 41 H 1.08998 * 109.46627 * 65.81941 * 21 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2492
5 8 1.5637 -0.0477 -2.4160
6 6 2.0400 -0.7212 1.2493
7 7 1.3723 -0.1738 2.4377
8 6 0.0523 -0.7881 2.6295
9 6 -0.5501 -0.3038 3.9503
10 6 -0.6763 1.2219 3.9190
11 6 0.7043 1.8353 3.6697
12 1 1.3721 1.5743 4.4907
13 6 0.5798 3.3344 3.5797
14 1 0.8777 3.8477 2.6773
15 6 0.0858 4.0507 4.6492
16 7 -0.2772 3.4256 5.7478
17 14 -0.0690 5.9089 4.5372
18 1 -1.4079 6.2627 4.0010
19 1 0.0952 6.5017 5.8889
20 1 0.9824 6.4397 3.6328
21 6 1.2703 1.2890 2.3571
22 1 -0.3634 0.6189 0.8204
23 1 -0.3633 0.4009 -0.9462
24 1 -0.3633 -1.0199 0.1258
25 1 2.9488 1.5066 0.5983
26 1 2.2558 1.7515 -1.0228
27 1 1.2787 2.0970 0.4243
28 1 3.1300 -0.7217 -1.2490
29 1 1.6767 -1.7489 -1.2492
30 1 1.8494 -0.4510 -3.2472
31 1 3.1167 -0.5763 1.3384
32 1 1.8222 -1.7862 1.1683
33 1 -0.6032 -0.5051 1.8059
34 1 0.1568 -1.8729 2.6542
35 1 -1.5364 -0.7479 4.0849
36 1 0.0976 -0.5991 4.7757
37 1 -1.3552 1.5148 3.1182
38 1 -1.0658 1.5748 4.8740
39 1 -0.6251 3.9295 6.5001
40 1 2.2594 1.7129 2.1838
41 1 0.6091 1.5623 1.5348
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000691480988.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:53:38
Heat of formation + Delta-G solvation = -46.973453 kcal
Electronic energy + Delta-G solvation = -19139.906142 eV
Core-core repulsion = 16440.762394 eV
Total energy + Delta-G solvation = -2699.143747 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.37744 -38.19356 -36.25031 -34.62877 -32.39684 -31.85860 -28.61821 -28.48894
-26.63321 -26.15244 -23.19502 -22.86988 -20.42449 -19.95376 -18.39708 -18.09733
-16.80749 -16.51128 -16.08403 -15.96934 -15.48729 -15.02170 -14.91069 -14.41845
-14.12278 -13.79137 -13.72114 -13.33214 -13.04381 -12.81995 -12.72163 -12.55727
-12.39934 -12.34653 -11.86240 -11.81303 -11.62406 -11.50474 -11.34898 -11.11256
-10.78625 -10.76322 -10.47876 -10.33871 -8.74390 -8.06225 -6.20001 1.40156
1.40680 1.50977 2.43265 3.20388 3.20794 3.44120 3.83508 3.96847
4.15612 4.28868 4.36255 4.42148 4.54304 4.56118 4.61169 4.67929
4.78666 4.81562 4.82689 4.91333 4.99325 5.01914 5.09807 5.13697
5.21678 5.26939 5.29945 5.40373 5.44909 5.55475 5.60324 5.66116
6.02975 6.19610 6.27592 6.49218 6.53473 6.94431 7.00652 7.47779
8.98333
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.028554 B = 0.007287 C = 0.006263
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 980.360074 B = 3841.687875 C = 4469.574234
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.092 4.092
3 C -0.149 4.149
4 C 0.095 3.905
5 O -0.589 6.589
6 C 0.066 3.934
7 N -0.545 5.545
8 C 0.039 3.961
9 C -0.113 4.113
10 C -0.102 4.102
11 C 0.048 3.952
12 H -0.013 1.013
13 C -0.532 4.532
14 H 0.050 0.950
15 C 0.013 3.987
16 N -0.917 5.917
17 Si 0.951 3.049
18 H -0.276 1.276
19 H -0.283 1.283
20 H -0.269 1.269
21 C 0.062 3.938
22 H 0.054 0.946
23 H 0.053 0.947
24 H 0.066 0.934
25 H 0.053 0.947
26 H 0.054 0.946
27 H 0.053 0.947
28 H 0.057 0.943
29 H 0.060 0.940
30 H 0.394 0.606
31 H 0.075 0.925
32 H 0.088 0.912
33 H 0.061 0.939
34 H 0.083 0.917
35 H 0.066 0.934
36 H 0.043 0.957
37 H 0.021 0.979
38 H 0.053 0.947
39 H 0.259 0.741
40 H 0.055 0.945
41 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.996 -10.569 -13.251 17.212
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.094 4.094
3 C -0.206 4.206
4 C 0.017 3.983
5 O -0.396 6.396
6 C -0.062 4.062
7 N -0.268 5.268
8 C -0.088 4.088
9 C -0.150 4.150
10 C -0.141 4.141
11 C 0.029 3.971
12 H 0.005 0.995
13 C -0.570 4.570
14 H 0.068 0.932
15 C -0.185 4.185
16 N -0.556 5.556
17 Si 0.776 3.224
18 H -0.202 1.202
19 H -0.209 1.209
20 H -0.193 1.193
21 C -0.065 4.065
22 H 0.073 0.927
23 H 0.072 0.928
24 H 0.085 0.915
25 H 0.072 0.928
26 H 0.073 0.927
27 H 0.071 0.929
28 H 0.075 0.925
29 H 0.078 0.922
30 H 0.243 0.757
31 H 0.093 0.907
32 H 0.107 0.893
33 H 0.079 0.921
34 H 0.101 0.899
35 H 0.084 0.916
36 H 0.062 0.938
37 H 0.040 0.960
38 H 0.072 0.928
39 H 0.068 0.932
40 H 0.073 0.927
41 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 2.951 -10.276 -12.204 16.225
hybrid contribution -0.351 1.133 -0.532 1.300
sum 2.600 -9.143 -12.736 15.892
Atomic orbital electron populations
1.22305 0.95049 1.01749 1.01353 1.21261 0.96143 0.96353 0.95642
1.22461 1.00952 0.96082 1.01077 1.22073 0.97568 0.94487 0.84186
1.86463 1.77897 1.58240 1.17049 1.22354 0.98922 0.98875 0.86020
1.62135 1.21139 1.05844 1.37662 1.22653 0.90158 0.98688 0.97342
1.21601 0.99525 0.96245 0.97667 1.21433 0.98628 0.93614 1.00388
1.18675 0.92695 0.93114 0.92643 0.99472 1.21534 1.42118 0.93434
0.99943 0.93156 1.25713 0.95231 1.02500 0.95095 1.70049 1.44214
1.36607 1.04759 0.85672 0.78544 0.80819 0.77329 1.20170 1.20907
1.19314 1.22886 0.99358 0.86381 0.97856 0.92736 0.92841 0.91520
0.92826 0.92730 0.92869 0.92527 0.92151 0.75666 0.90674 0.89331
0.92138 0.89904 0.91586 0.93794 0.95968 0.92839 0.93192 0.92665
0.92572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.19 6.40 71.98 0.46 -3.73 16
2 C -0.09 -2.42 0.60 -52.18 -0.03 -2.45 16
3 C -0.15 -4.60 7.31 71.98 0.53 -4.07 16
4 C 0.10 1.86 5.84 71.98 0.42 2.28 16
5 O -0.59 -12.06 11.93 -148.98 -1.78 -13.83 16
6 C 0.07 1.79 4.91 86.31 0.42 2.21 16
7 N -0.54 -19.35 4.86 -896.35 -4.35 -23.70 16
8 C 0.04 1.28 4.77 86.33 0.41 1.69 16
9 C -0.11 -4.44 6.09 30.65 0.19 -4.25 16
10 C -0.10 -5.05 5.02 30.67 0.15 -4.89 16
11 C 0.05 2.49 2.26 -11.49 -0.03 2.46 16
12 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16
13 C -0.53 -30.23 8.57 25.60 0.22 -30.02 16
14 H 0.05 2.81 7.75 -2.91 -0.02 2.78 16
15 C 0.01 0.74 5.30 84.66 0.45 1.19 16
16 N -0.92 -54.69 11.35 21.45 0.24 -54.45 16
17 Si 0.95 44.83 29.54 68.60 2.03 46.85 16
18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
19 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16
20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16
21 C 0.06 2.61 2.66 86.32 0.23 2.84 16
22 H 0.05 1.86 3.80 -2.39 -0.01 1.85 16
23 H 0.05 1.55 7.48 -2.39 -0.02 1.53 16
24 H 0.07 1.64 7.24 -2.39 -0.02 1.62 16
25 H 0.05 1.67 6.23 -2.39 -0.01 1.66 16
26 H 0.05 1.60 7.06 -2.39 -0.02 1.59 16
27 H 0.05 1.93 5.10 -2.39 -0.01 1.92 16
28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
29 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16
30 H 0.39 4.09 9.12 -74.06 -0.68 3.41 16
31 H 0.07 1.97 7.88 -2.39 -0.02 1.95 16
32 H 0.09 1.95 7.72 -2.39 -0.02 1.93 16
33 H 0.06 1.94 3.75 -2.39 -0.01 1.93 16
34 H 0.08 2.28 7.92 -2.38 -0.02 2.26 16
35 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16
36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16
37 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16
38 H 0.05 3.00 6.15 -2.38 -0.01 2.98 16
39 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16
40 H 0.06 2.39 6.02 -2.39 -0.01 2.37 16
41 H 0.06 2.37 2.77 -2.39 -0.01 2.36 16
Total: -1.00 -65.42 291.89 -0.09 -65.51
By element:
Atomic # 1 Polarization: 16.01 SS G_CDS: 0.35 Total: 16.35 kcal
Atomic # 6 Polarization: -40.16 SS G_CDS: 3.42 Total: -36.73 kcal
Atomic # 7 Polarization: -74.04 SS G_CDS: -4.11 Total: -78.15 kcal
Atomic # 8 Polarization: -12.06 SS G_CDS: -1.78 Total: -13.83 kcal
Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal
Total: -65.42 -0.09 -65.51 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691480988.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.538 kcal
(2) G-P(sol) polarization free energy of solvation -65.419 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.973 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds