Wall clock time and date at job start Mon Mar 30 2020 04:53:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.46833 * 2 1
4 4 C 1.53003 * 109.47039 * 240.00125 * 2 1 3
5 5 O 1.42899 * 109.46987 * 59.99846 * 4 2 1
6 6 C 1.52991 * 109.47284 * 119.99819 * 2 1 3
7 7 N 1.46904 * 109.47574 * 183.00829 * 6 2 1
8 8 C 1.46848 * 110.99378 * 86.61088 * 7 6 2
9 9 C 1.53037 * 109.52360 * 185.80747 * 8 7 6
10 10 C 1.53121 * 109.30856 * 300.88393 * 9 8 7
11 11 C 1.53124 * 109.16006 * 57.63387 * 10 9 8
12 12 H 1.08998 * 109.49974 * 62.28889 * 11 10 9
13 13 C 1.50707 * 109.50096 * 182.36519 * 11 10 9
14 14 H 1.08001 * 119.99590 * 119.99928 * 13 11 10
15 15 C 1.37876 * 120.00020 * 300.00191 * 13 11 10
16 16 N 1.31516 * 119.99870 * 359.97438 * 15 13 11
17 17 Si 1.86796 * 119.99975 * 180.02562 * 15 13 11
18 18 H 1.48502 * 109.47252 * 359.97438 * 17 15 13
19 19 H 1.48505 * 109.47104 * 119.99799 * 17 15 13
20 20 H 1.48496 * 109.47154 * 239.99545 * 17 15 13
21 21 C 1.46840 * 111.00637 * 210.86640 * 7 6 2
22 22 H 1.09004 * 109.47275 * 304.88219 * 1 2 3
23 23 H 1.09003 * 109.47701 * 64.88671 * 1 2 3
24 24 H 1.09001 * 109.47291 * 184.88992 * 1 2 3
25 25 H 1.09001 * 109.46849 * 187.94629 * 3 2 1
26 26 H 1.09002 * 109.47285 * 307.94275 * 3 2 1
27 27 H 1.08999 * 109.47507 * 67.94660 * 3 2 1
28 28 H 1.08996 * 109.46676 * 179.97438 * 4 2 1
29 29 H 1.08995 * 109.47194 * 299.99504 * 4 2 1
30 30 H 0.96698 * 113.99733 * 179.97438 * 5 4 2
31 31 H 1.09007 * 109.47033 * 63.01162 * 6 2 1
32 32 H 1.09002 * 109.47973 * 303.01155 * 6 2 1
33 33 H 1.09005 * 109.42698 * 65.80903 * 8 7 6
34 34 H 1.09004 * 109.49663 * 305.84496 * 8 7 6
35 35 H 1.09002 * 109.50117 * 180.92508 * 9 8 7
36 36 H 1.08996 * 109.50373 * 60.84252 * 9 8 7
37 37 H 1.09000 * 109.52368 * 177.53777 * 10 9 8
38 38 H 1.08997 * 109.52455 * 297.66607 * 10 9 8
39 39 H 0.97004 * 119.99443 * 180.02562 * 16 15 13
40 40 H 1.09006 * 109.45842 * 54.14387 * 21 7 6
41 41 H 1.09003 * 109.46274 * 294.17844 * 21 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 8 1.5636 -0.0476 -2.4160
6 6 2.0400 -0.7212 1.2492
7 7 3.5072 -0.6586 1.2861
8 6 3.9649 0.5773 1.9340
9 6 5.4882 0.6774 1.8260
10 6 6.1248 -0.5413 2.4999
11 6 5.5944 -1.8160 1.8376
12 1 5.8849 -1.8281 0.7872
13 6 6.1715 -3.0219 2.5333
14 1 5.5154 -3.7394 3.0036
15 6 7.5370 -3.2092 2.5693
16 7 8.3359 -2.3356 1.9962
17 14 8.2523 -4.7042 3.4310
18 1 7.1503 -5.5275 3.9904
19 1 9.0293 -5.5123 2.4570
20 1 9.1461 -4.2611 4.5309
21 6 4.0682 -1.8443 1.9462
22 1 -0.3634 0.5877 0.8430
23 1 -0.3634 0.4361 -0.9305
24 1 -0.3634 -1.0239 0.0876
25 1 3.1206 1.4458 -0.1421
26 1 1.5652 1.9957 -0.8104
27 1 1.7972 1.9137 0.9524
28 1 3.1299 -0.7208 -1.2495
29 1 1.6767 -1.7489 -1.2493
30 1 1.8492 -0.4509 -3.2472
31 1 1.7214 -1.7633 1.2226
32 1 1.6333 -0.2395 2.1384
33 1 3.6753 0.5645 2.9847
34 1 3.5087 1.4364 1.4421
35 1 5.8291 1.5866 2.3213
36 1 5.7776 0.7048 0.7755
37 1 7.2079 -0.4957 2.3869
38 1 5.8689 -0.5467 3.5594
39 1 9.2966 -2.4676 2.0213
40 1 3.6864 -2.7436 1.4629
41 1 3.7787 -1.8460 2.9971
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000691480989.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:53:41
Heat of formation + Delta-G solvation = -63.096050 kcal
Electronic energy + Delta-G solvation = -18671.231505 eV
Core-core repulsion = 15971.388629 eV
Total energy + Delta-G solvation = -2699.842876 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.08809 -37.10002 -34.90292 -32.98047 -31.25786 -29.89396 -27.19530 -26.26153
-25.26519 -24.75612 -21.89234 -21.22917 -18.77965 -18.46704 -17.15249 -16.33572
-15.26617 -14.96771 -14.60682 -14.35192 -14.03499 -13.73600 -13.09245 -12.68056
-12.63617 -12.44202 -12.27135 -12.01587 -11.92971 -11.68545 -11.19751 -10.98463
-10.80353 -10.71921 -10.57920 -10.50185 -10.22139 -9.92015 -9.78684 -9.68171
-9.44077 -8.91508 -8.67405 -8.28764 -7.60398 -5.96737 -4.02859 3.29786
3.37958 3.41509 4.38334 4.42212 4.57015 5.04871 5.14442 5.30254
5.33388 5.61908 5.71837 5.72475 5.77979 5.82884 5.89129 5.97640
6.06864 6.11239 6.17699 6.18469 6.29506 6.37519 6.43297 6.51550
6.54944 6.63067 6.77559 6.79175 6.99960 7.25070 7.43446 7.71670
7.77211 7.81033 7.87183 8.10176 8.19548 8.49912 9.01616 9.61497
11.09125
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.035651 B = 0.005806 C = 0.005583
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 785.203675 B = 4821.695874 C = 5014.296009
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.052 4.052
3 C -0.136 4.136
4 C 0.091 3.909
5 O -0.578 6.578
6 C 0.062 3.938
7 N -0.536 5.536
8 C 0.045 3.955
9 C -0.117 4.117
10 C -0.111 4.111
11 C 0.055 3.945
12 H 0.033 0.967
13 C -0.514 4.514
14 H 0.053 0.947
15 C 0.063 3.937
16 N -0.888 5.888
17 Si 0.889 3.111
18 H -0.274 1.274
19 H -0.284 1.284
20 H -0.285 1.285
21 C 0.068 3.932
22 H 0.049 0.951
23 H 0.062 0.938
24 H 0.049 0.951
25 H 0.071 0.929
26 H 0.052 0.948
27 H 0.046 0.954
28 H 0.065 0.935
29 H 0.036 0.964
30 H 0.373 0.627
31 H 0.065 0.935
32 H 0.037 0.963
33 H 0.019 0.981
34 H 0.078 0.922
35 H 0.044 0.956
36 H 0.059 0.941
37 H 0.090 0.910
38 H 0.028 0.972
39 H 0.259 0.741
40 H 0.057 0.943
41 H 0.017 0.983
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.667 5.300 -4.112 13.458
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.053 4.053
3 C -0.192 4.192
4 C 0.014 3.986
5 O -0.383 6.383
6 C -0.067 4.067
7 N -0.260 5.260
8 C -0.083 4.083
9 C -0.155 4.155
10 C -0.149 4.149
11 C 0.036 3.964
12 H 0.051 0.949
13 C -0.553 4.553
14 H 0.071 0.929
15 C -0.139 4.139
16 N -0.527 5.527
17 Si 0.717 3.283
18 H -0.199 1.199
19 H -0.210 1.210
20 H -0.211 1.211
21 C -0.059 4.059
22 H 0.068 0.932
23 H 0.081 0.919
24 H 0.068 0.932
25 H 0.090 0.910
26 H 0.071 0.929
27 H 0.065 0.935
28 H 0.084 0.916
29 H 0.054 0.946
30 H 0.219 0.781
31 H 0.084 0.916
32 H 0.056 0.944
33 H 0.037 0.963
34 H 0.096 0.904
35 H 0.063 0.937
36 H 0.078 0.922
37 H 0.108 0.892
38 H 0.047 0.953
39 H 0.069 0.931
40 H 0.075 0.925
41 H 0.035 0.965
Dipole moment (debyes) X Y Z Total
from point charges -11.576 5.714 -4.149 13.560
hybrid contribution 0.444 -1.287 1.040 1.714
sum -11.132 4.427 -3.109 12.377
Atomic orbital electron populations
1.21799 0.94818 1.01213 1.01743 1.20504 0.94698 0.96278 0.93845
1.21969 1.02093 0.94846 1.00340 1.22168 0.98892 0.93485 0.84086
1.86404 1.77750 1.57927 1.16244 1.22130 0.89421 0.99716 0.95442
1.61907 1.05839 1.03292 1.54927 1.22521 0.97235 0.92791 0.95727
1.21665 0.93593 0.99027 1.01205 1.21646 1.03014 0.93424 0.96776
1.18657 0.87340 0.93237 0.97128 0.94868 1.21200 0.91625 1.07321
1.35107 0.92871 1.24933 0.97195 0.96267 0.95460 1.69907 1.03413
1.35117 1.44300 0.86586 0.79112 0.83166 0.79405 1.19892 1.21049
1.21112 1.22338 0.99032 0.89925 0.94619 0.93221 0.91870 0.93202
0.91018 0.92926 0.93526 0.91633 0.94590 0.78095 0.91610 0.94444
0.96288 0.90424 0.93720 0.92240 0.89213 0.95296 0.93145 0.92481
0.96471
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.65 8.39 37.16 0.31 -1.34 16
2 C -0.05 -0.71 0.68 -154.51 -0.10 -0.82 16
3 C -0.14 -1.84 6.51 37.16 0.24 -1.60 16
4 C 0.09 1.26 5.78 37.16 0.21 1.47 16
5 O -0.58 -7.32 12.38 -35.23 -0.44 -7.76 16
6 C 0.06 0.93 4.25 -3.83 -0.02 0.91 16
7 N -0.54 -9.62 3.71 -234.67 -0.87 -10.49 16
8 C 0.04 0.79 4.69 -3.83 -0.02 0.77 16
9 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16
10 C -0.11 -2.63 5.03 -26.60 -0.13 -2.76 16
11 C 0.06 1.37 2.26 -91.69 -0.21 1.17 16
12 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16
13 C -0.51 -14.07 8.57 -34.44 -0.29 -14.37 16
14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16
15 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16
16 N -0.89 -25.37 11.35 55.43 0.63 -24.74 16
17 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16
18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
21 C 0.07 1.43 4.58 -3.84 -0.02 1.41 16
22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
23 H 0.06 0.77 7.54 -51.93 -0.39 0.38 16
24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
25 H 0.07 1.07 6.25 -51.93 -0.32 0.75 16
26 H 0.05 0.70 7.91 -51.93 -0.41 0.29 16
27 H 0.05 0.59 7.44 -51.93 -0.39 0.21 16
28 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16
29 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16
30 H 0.37 3.20 9.12 45.56 0.42 3.62 16
31 H 0.07 0.98 7.62 -51.92 -0.40 0.58 16
32 H 0.04 0.55 7.83 -51.93 -0.41 0.14 16
33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
34 H 0.08 1.21 3.99 -51.93 -0.21 1.00 16
35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
37 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16
38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16
39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
40 H 0.06 1.19 7.90 -51.93 -0.41 0.77 16
41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
LS Contribution 309.20 15.07 4.66 4.66
Total: -1.00 -28.71 309.20 -7.90 -36.61
By element:
Atomic # 1 Polarization: 8.04 SS G_CDS: -6.58 Total: 1.46 kcal
Atomic # 6 Polarization: -15.70 SS G_CDS: -0.28 Total: -15.98 kcal
Atomic # 7 Polarization: -34.99 SS G_CDS: -0.24 Total: -35.23 kcal
Atomic # 8 Polarization: -7.32 SS G_CDS: -0.44 Total: -7.76 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -28.71 -7.90 -36.61 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691480989.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.483 kcal
(2) G-P(sol) polarization free energy of solvation -28.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.194 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds