Wall clock time and date at job start Mon Mar 30 2020 04:53:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.46833 * 2 1
4 4 C 1.53003 * 109.47039 * 240.00125 * 2 1 3
5 5 O 1.42899 * 109.46987 * 59.99846 * 4 2 1
6 6 C 1.52991 * 109.47284 * 119.99819 * 2 1 3
7 7 N 1.46904 * 109.47574 * 183.00829 * 6 2 1
8 8 C 1.46848 * 110.99378 * 86.61088 * 7 6 2
9 9 C 1.53037 * 109.52360 * 185.80747 * 8 7 6
10 10 C 1.53121 * 109.30856 * 300.88393 * 9 8 7
11 11 C 1.53124 * 109.16006 * 57.63387 * 10 9 8
12 12 H 1.08998 * 109.49974 * 62.28889 * 11 10 9
13 13 C 1.50707 * 109.50096 * 182.36519 * 11 10 9
14 14 H 1.08001 * 119.99590 * 119.99928 * 13 11 10
15 15 C 1.37876 * 120.00020 * 300.00191 * 13 11 10
16 16 N 1.31516 * 119.99870 * 359.97438 * 15 13 11
17 17 Si 1.86796 * 119.99975 * 180.02562 * 15 13 11
18 18 H 1.48502 * 109.47252 * 359.97438 * 17 15 13
19 19 H 1.48505 * 109.47104 * 119.99799 * 17 15 13
20 20 H 1.48496 * 109.47154 * 239.99545 * 17 15 13
21 21 C 1.46840 * 111.00637 * 210.86640 * 7 6 2
22 22 H 1.09004 * 109.47275 * 304.88219 * 1 2 3
23 23 H 1.09003 * 109.47701 * 64.88671 * 1 2 3
24 24 H 1.09001 * 109.47291 * 184.88992 * 1 2 3
25 25 H 1.09001 * 109.46849 * 187.94629 * 3 2 1
26 26 H 1.09002 * 109.47285 * 307.94275 * 3 2 1
27 27 H 1.08999 * 109.47507 * 67.94660 * 3 2 1
28 28 H 1.08996 * 109.46676 * 179.97438 * 4 2 1
29 29 H 1.08995 * 109.47194 * 299.99504 * 4 2 1
30 30 H 0.96698 * 113.99733 * 179.97438 * 5 4 2
31 31 H 1.09007 * 109.47033 * 63.01162 * 6 2 1
32 32 H 1.09002 * 109.47973 * 303.01155 * 6 2 1
33 33 H 1.09005 * 109.42698 * 65.80903 * 8 7 6
34 34 H 1.09004 * 109.49663 * 305.84496 * 8 7 6
35 35 H 1.09002 * 109.50117 * 180.92508 * 9 8 7
36 36 H 1.08996 * 109.50373 * 60.84252 * 9 8 7
37 37 H 1.09000 * 109.52368 * 177.53777 * 10 9 8
38 38 H 1.08997 * 109.52455 * 297.66607 * 10 9 8
39 39 H 0.97004 * 119.99443 * 180.02562 * 16 15 13
40 40 H 1.09006 * 109.45842 * 54.14387 * 21 7 6
41 41 H 1.09003 * 109.46274 * 294.17844 * 21 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 8 1.5636 -0.0476 -2.4160
6 6 2.0400 -0.7212 1.2492
7 7 3.5072 -0.6586 1.2861
8 6 3.9649 0.5773 1.9340
9 6 5.4882 0.6774 1.8260
10 6 6.1248 -0.5413 2.4999
11 6 5.5944 -1.8160 1.8376
12 1 5.8849 -1.8281 0.7872
13 6 6.1715 -3.0219 2.5333
14 1 5.5154 -3.7394 3.0036
15 6 7.5370 -3.2092 2.5693
16 7 8.3359 -2.3356 1.9962
17 14 8.2523 -4.7042 3.4310
18 1 7.1503 -5.5275 3.9904
19 1 9.0293 -5.5123 2.4570
20 1 9.1461 -4.2611 4.5309
21 6 4.0682 -1.8443 1.9462
22 1 -0.3634 0.5877 0.8430
23 1 -0.3634 0.4361 -0.9305
24 1 -0.3634 -1.0239 0.0876
25 1 3.1206 1.4458 -0.1421
26 1 1.5652 1.9957 -0.8104
27 1 1.7972 1.9137 0.9524
28 1 3.1299 -0.7208 -1.2495
29 1 1.6767 -1.7489 -1.2493
30 1 1.8492 -0.4509 -3.2472
31 1 1.7214 -1.7633 1.2226
32 1 1.6333 -0.2395 2.1384
33 1 3.6753 0.5645 2.9847
34 1 3.5087 1.4364 1.4421
35 1 5.8291 1.5866 2.3213
36 1 5.7776 0.7048 0.7755
37 1 7.2079 -0.4957 2.3869
38 1 5.8689 -0.5467 3.5594
39 1 9.2966 -2.4676 2.0213
40 1 3.6864 -2.7436 1.4629
41 1 3.7787 -1.8460 2.9971
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000691480989.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:53:41
Heat of formation + Delta-G solvation = -82.012122 kcal
Electronic energy + Delta-G solvation = -18672.051767 eV
Core-core repulsion = 15971.388629 eV
Total energy + Delta-G solvation = -2700.663138 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.44295 -38.42224 -36.21512 -34.74811 -32.85885 -31.70466 -28.34719 -27.39257
-26.83990 -26.39241 -23.49599 -22.95407 -20.35445 -19.76983 -18.42743 -18.13392
-16.79898 -16.41810 -16.13804 -15.63467 -15.40009 -15.16474 -14.77620 -14.41492
-14.02216 -13.87530 -13.50865 -13.33585 -13.28538 -12.88271 -12.84381 -12.68700
-12.46801 -12.38003 -12.04365 -11.82515 -11.66859 -11.48240 -11.33852 -11.27202
-10.75586 -10.64539 -10.64068 -10.33167 -9.05934 -8.07862 -6.22011 1.39665
1.41520 1.52631 2.42609 3.11443 3.19123 3.43790 3.96922 4.01684
4.22249 4.28689 4.30545 4.39502 4.54087 4.64515 4.69657 4.71468
4.78367 4.82774 4.88461 4.93429 4.97255 5.01672 5.11047 5.15122
5.17137 5.20324 5.29949 5.41972 5.48736 5.55982 5.58129 5.64562
5.98866 6.14154 6.23639 6.41416 6.48420 6.91470 6.98217 7.46029
8.96783
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.035651 B = 0.005806 C = 0.005583
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 785.203675 B = 4821.695874 C = 5014.296009
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.052 4.052
3 C -0.132 4.132
4 C 0.096 3.904
5 O -0.584 6.584
6 C 0.063 3.937
7 N -0.540 5.540
8 C 0.049 3.951
9 C -0.110 4.110
10 C -0.104 4.104
11 C 0.053 3.947
12 H -0.003 1.003
13 C -0.535 4.535
14 H 0.050 0.950
15 C 0.014 3.986
16 N -0.916 5.916
17 Si 0.953 3.047
18 H -0.268 1.268
19 H -0.280 1.280
20 H -0.281 1.281
21 C 0.082 3.918
22 H 0.060 0.940
23 H 0.061 0.939
24 H 0.055 0.945
25 H 0.055 0.945
26 H 0.055 0.945
27 H 0.058 0.942
28 H 0.040 0.960
29 H 0.040 0.960
30 H 0.390 0.610
31 H 0.068 0.932
32 H 0.049 0.951
33 H 0.021 0.979
34 H 0.106 0.894
35 H 0.066 0.934
36 H 0.049 0.951
37 H 0.056 0.944
38 H 0.020 0.980
39 H 0.260 0.740
40 H 0.056 0.944
41 H 0.012 0.988
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.297 5.606 -3.825 14.928
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.053 4.053
3 C -0.189 4.189
4 C 0.018 3.982
5 O -0.392 6.392
6 C -0.065 4.065
7 N -0.264 5.264
8 C -0.078 4.078
9 C -0.148 4.148
10 C -0.142 4.142
11 C 0.035 3.965
12 H 0.015 0.985
13 C -0.574 4.574
14 H 0.069 0.931
15 C -0.185 4.185
16 N -0.556 5.556
17 Si 0.779 3.221
18 H -0.192 1.192
19 H -0.206 1.206
20 H -0.207 1.207
21 C -0.045 4.045
22 H 0.080 0.920
23 H 0.080 0.920
24 H 0.074 0.926
25 H 0.074 0.926
26 H 0.074 0.926
27 H 0.077 0.923
28 H 0.059 0.941
29 H 0.058 0.942
30 H 0.239 0.761
31 H 0.086 0.914
32 H 0.067 0.933
33 H 0.039 0.961
34 H 0.123 0.877
35 H 0.084 0.916
36 H 0.068 0.932
37 H 0.075 0.925
38 H 0.039 0.961
39 H 0.069 0.931
40 H 0.074 0.926
41 H 0.031 0.969
Dipole moment (debyes) X Y Z Total
from point charges -13.222 6.022 -3.879 15.037
hybrid contribution 0.956 -1.369 0.888 1.891
sum -12.266 4.653 -2.991 13.456
Atomic orbital electron populations
1.21731 0.93095 1.01903 1.02173 1.20502 0.95964 0.95983 0.92841
1.21913 1.00957 0.94922 1.01103 1.22023 0.97362 0.93915 0.84885
1.86360 1.77687 1.58246 1.16881 1.22202 0.87113 1.00435 0.96757
1.61843 1.07967 1.02229 1.54390 1.22537 0.95544 0.93501 0.96202
1.21575 0.95192 0.97844 1.00198 1.21461 1.01196 0.95052 0.96512
1.18576 0.90173 0.93176 0.94607 0.98491 1.21568 0.92137 1.08270
1.35375 0.93127 1.25713 0.97624 0.99007 0.96142 1.70049 1.03592
1.36673 1.45250 0.85578 0.78363 0.79802 0.78331 1.19184 1.20607
1.20678 1.22004 0.96414 0.91522 0.94583 0.92045 0.92030 0.92569
0.92638 0.92646 0.92335 0.94122 0.94200 0.76097 0.91353 0.93299
0.96085 0.87673 0.91569 0.93236 0.92548 0.96137 0.93110 0.92556
0.96940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.74 8.39 71.98 0.60 -2.14 16
2 C -0.05 -1.30 0.68 -52.18 -0.04 -1.33 16
3 C -0.13 -3.26 6.51 71.98 0.47 -2.79 16
4 C 0.10 2.51 5.78 71.98 0.42 2.93 16
5 O -0.58 -13.72 12.38 -148.98 -1.84 -15.57 16
6 C 0.06 1.76 4.25 86.30 0.37 2.13 16
7 N -0.54 -18.88 3.71 -896.36 -3.32 -22.20 16
8 C 0.05 1.65 4.69 86.33 0.40 2.05 16
9 C -0.11 -4.28 6.09 30.65 0.19 -4.10 16
10 C -0.10 -5.05 5.03 30.68 0.15 -4.90 16
11 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16
12 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16
13 C -0.53 -29.90 8.57 25.60 0.22 -29.68 16
14 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16
15 C 0.01 0.77 5.30 84.65 0.45 1.22 16
16 N -0.92 -53.67 11.35 21.45 0.24 -53.42 16
17 Si 0.95 43.99 29.54 68.60 2.03 46.01 16
18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
21 C 0.08 3.47 4.58 86.33 0.40 3.87 16
22 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16
23 H 0.06 1.33 7.54 -2.39 -0.02 1.31 16
24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
25 H 0.05 1.55 6.25 -2.39 -0.01 1.54 16
26 H 0.05 1.34 7.91 -2.39 -0.02 1.32 16
27 H 0.06 1.29 7.44 -2.39 -0.02 1.28 16
28 H 0.04 1.26 7.69 -2.39 -0.02 1.24 16
29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16
30 H 0.39 6.05 9.12 -74.06 -0.68 5.37 16
31 H 0.07 1.89 7.62 -2.38 -0.02 1.87 16
32 H 0.05 1.28 7.83 -2.39 -0.02 1.26 16
33 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16
34 H 0.11 2.99 3.99 -2.39 -0.01 2.98 16
35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16
37 H 0.06 3.11 6.15 -2.39 -0.01 3.09 16
38 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16
39 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16
40 H 0.06 2.34 7.90 -2.38 -0.02 2.32 16
41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16
Total: -1.00 -62.03 309.20 1.02 -61.01
By element:
Atomic # 1 Polarization: 13.88 SS G_CDS: 0.31 Total: 14.19 kcal
Atomic # 6 Polarization: -33.63 SS G_CDS: 3.60 Total: -30.02 kcal
Atomic # 7 Polarization: -72.54 SS G_CDS: -3.08 Total: -75.62 kcal
Atomic # 8 Polarization: -13.72 SS G_CDS: -1.84 Total: -15.57 kcal
Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal
Total: -62.03 1.02 -61.01 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691480989.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.000 kcal
(2) G-P(sol) polarization free energy of solvation -62.028 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.028 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.012 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.012 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds