Wall clock time and date at job start Mon Mar 30 2020 03:19:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53782 * 113.61115 * 2 1
4 4 C 1.53951 * 87.01951 * 220.04586 * 3 2 1
5 5 C 1.53004 * 113.73988 * 139.94416 * 4 3 2
6 6 N 1.46906 * 109.47159 * 87.40834 * 5 4 3
7 7 C 1.46900 * 110.99871 * 66.03892 * 6 5 4
8 8 C 1.46895 * 110.99938 * 189.99690 * 6 5 4
9 9 C 1.53004 * 109.46758 * 75.89171 * 8 6 5
10 10 O 1.42894 * 109.47502 * 64.41759 * 9 8 6
11 11 C 1.42897 * 114.00521 * 179.97438 * 10 9 8
12 12 C 1.50701 * 109.47612 * 180.02562 * 11 10 9
13 13 H 1.08002 * 120.00054 * 359.97438 * 12 11 10
14 14 C 1.37876 * 120.00103 * 179.97438 * 12 11 10
15 15 N 1.31516 * 119.99947 * 359.97438 * 14 12 11
16 16 Si 1.86802 * 119.99941 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.47075 * 359.97438 * 16 14 12
18 18 H 1.48497 * 109.47147 * 120.00194 * 16 14 12
19 19 H 1.48500 * 109.47069 * 240.00070 * 16 14 12
20 20 C 1.53776 * 87.11044 * 25.36695 * 4 3 2
21 21 H 1.09001 * 109.46472 * 159.13418 * 1 2 3
22 22 H 1.09003 * 109.47091 * 39.13193 * 1 2 3
23 23 H 1.08994 * 109.46925 * 279.13490 * 1 2 3
24 24 H 1.08996 * 112.84958 * 131.19477 * 2 1 3
25 25 H 1.08995 * 113.61648 * 334.57145 * 3 2 1
26 26 H 1.09005 * 113.61130 * 105.47527 * 3 2 1
27 27 H 1.09000 * 113.53995 * 270.81438 * 4 3 2
28 28 H 1.09000 * 109.47214 * 207.40471 * 5 4 3
29 29 H 1.08997 * 109.47554 * 327.40268 * 5 4 3
30 30 H 1.09004 * 109.46971 * 54.64470 * 7 6 5
31 31 H 1.09003 * 109.46527 * 174.63620 * 7 6 5
32 32 H 1.08996 * 109.47557 * 294.64143 * 7 6 5
33 33 H 1.09001 * 109.46907 * 195.88337 * 8 6 5
34 34 H 1.08992 * 109.47484 * 315.89161 * 8 6 5
35 35 H 1.09000 * 109.46838 * 184.41710 * 9 8 6
36 36 H 1.08993 * 109.47308 * 304.41330 * 9 8 6
37 37 H 1.09000 * 109.46877 * 300.00019 * 11 10 9
38 38 H 1.08995 * 109.47277 * 59.99557 * 11 10 9
39 39 H 0.97001 * 119.99813 * 180.02562 * 15 14 12
40 40 H 1.09004 * 113.61296 * 220.08997 * 20 4 3
41 41 H 1.08997 * 113.69351 * 89.19531 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1460 1.4091 0.0000
4 6 3.1923 0.8643 -0.9892
5 6 3.5475 1.8425 -2.1108
6 7 4.6341 2.7250 -1.6651
7 6 5.8752 1.9676 -1.4557
8 6 4.8426 3.8249 -2.6162
9 6 3.7322 4.8637 -2.4459
10 8 3.8236 5.4500 -1.1460
11 6 2.8268 6.4396 -0.8832
12 6 3.0175 6.9880 0.5075
13 1 3.8195 6.6175 1.1288
14 6 2.1681 7.9626 0.9867
15 7 1.1918 8.4141 0.2300
16 14 2.4041 8.6418 2.7108
17 1 3.5643 7.9724 3.3520
18 1 2.6541 10.1037 2.6370
19 1 1.1812 8.3887 3.5142
20 6 2.1461 -0.1864 -1.3966
21 1 -0.3632 -0.9603 -0.3661
22 1 -0.3633 0.7972 -0.6486
23 1 -0.3633 0.1631 1.0146
24 1 1.9533 -0.6615 0.7558
25 1 1.4945 2.1704 -0.4288
26 1 2.5650 1.7024 0.9626
27 1 4.0711 0.4400 -0.5035
28 1 3.8698 1.2852 -2.9904
29 1 2.6722 2.4418 -2.3611
30 1 6.1212 1.4153 -2.3628
31 1 6.6858 2.6567 -1.2188
32 1 5.7395 1.2687 -0.6304
33 1 5.8090 4.2917 -2.4256
34 1 4.8219 3.4344 -3.6335
35 1 3.8418 5.6401 -3.2031
36 1 2.7619 4.3803 -2.5590
37 1 2.9180 7.2486 -1.6080
38 1 1.8375 5.9892 -0.9641
39 1 0.5945 9.1000 0.5670
40 1 2.5651 -1.1793 -1.5600
41 1 1.4940 0.1366 -2.2081
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000691956273.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:37
Heat of formation + Delta-G solvation = -36.311914 kcal
Electronic energy + Delta-G solvation = -17811.145830 eV
Core-core repulsion = 15112.464401 eV
Total energy + Delta-G solvation = -2698.681428 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.37914 -37.32829 -35.78180 -32.64053 -30.62917 -29.31679 -27.04198 -26.77103
-25.48196 -23.96691 -22.20372 -21.37688 -20.03020 -19.26218 -16.33788 -15.94313
-15.55564 -15.39901 -14.82932 -14.66062 -14.12304 -13.98073 -13.48908 -13.12985
-12.98911 -12.85302 -12.30888 -12.14344 -12.07357 -11.62977 -11.60403 -11.25495
-11.12224 -10.79075 -10.71600 -10.71027 -10.45102 -10.25115 -9.96830 -9.90489
-9.85472 -8.98832 -8.71733 -8.05386 -7.94829 -6.03872 -4.04206 3.33670
3.39907 3.47188 4.07875 4.41952 4.66495 4.75355 4.85093 4.96424
4.99893 5.32759 5.32997 5.39925 5.46400 5.53427 5.56738 5.64074
5.72884 5.74706 5.82928 5.87626 5.90505 5.93245 6.02625 6.09156
6.09993 6.17692 6.25387 6.35914 6.37279 6.51382 6.71289 7.19738
7.34627 7.36653 7.52981 7.88781 8.25712 8.72067 9.11637 9.60513
11.07981
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.018664 B = 0.005819 C = 0.004916
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1499.820627 B = 4810.986934 C = 5694.816381
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.120 4.120
3 C -0.118 4.118
4 C -0.104 4.104
5 C 0.066 3.934
6 N -0.526 5.526
7 C 0.027 3.973
8 C 0.060 3.940
9 C 0.069 3.931
10 O -0.379 6.379
11 C 0.194 3.806
12 C -0.507 4.507
13 H 0.067 0.933
14 C 0.054 3.946
15 N -0.901 5.901
16 Si 0.905 3.095
17 H -0.270 1.270
18 H -0.283 1.283
19 H -0.283 1.283
20 C -0.132 4.132
21 H 0.050 0.950
22 H 0.056 0.944
23 H 0.054 0.946
24 H 0.083 0.917
25 H 0.083 0.917
26 H 0.068 0.932
27 H 0.088 0.912
28 H 0.026 0.974
29 H 0.076 0.924
30 H 0.017 0.983
31 H 0.066 0.934
32 H 0.066 0.934
33 H 0.078 0.922
34 H 0.038 0.962
35 H 0.036 0.964
36 H 0.034 0.966
37 H 0.001 0.999
38 H 0.002 0.998
39 H 0.262 0.738
40 H 0.060 0.940
41 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.132 -16.578 -5.078 17.619
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.138 4.138
3 C -0.156 4.156
4 C -0.123 4.123
5 C -0.062 4.062
6 N -0.249 5.249
7 C -0.121 4.121
8 C -0.068 4.068
9 C -0.009 4.009
10 O -0.298 6.298
11 C 0.120 3.880
12 C -0.545 4.545
13 H 0.085 0.915
14 C -0.146 4.146
15 N -0.541 5.541
16 Si 0.733 3.267
17 H -0.195 1.195
18 H -0.209 1.209
19 H -0.209 1.209
20 C -0.170 4.170
21 H 0.069 0.931
22 H 0.075 0.925
23 H 0.073 0.927
24 H 0.102 0.898
25 H 0.102 0.898
26 H 0.087 0.913
27 H 0.106 0.894
28 H 0.044 0.956
29 H 0.094 0.906
30 H 0.035 0.965
31 H 0.085 0.915
32 H 0.085 0.915
33 H 0.097 0.903
34 H 0.056 0.944
35 H 0.054 0.946
36 H 0.052 0.948
37 H 0.018 0.982
38 H 0.020 0.980
39 H 0.071 0.929
40 H 0.079 0.921
41 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 2.996 -16.284 -4.488 17.155
hybrid contribution -0.008 0.213 -0.166 0.270
sum 2.988 -16.071 -4.654 16.996
Atomic orbital electron populations
1.21716 0.95118 1.01264 1.01781 1.22486 0.95414 0.98623 0.97269
1.22988 0.97231 0.95380 0.99955 1.22508 0.97098 0.95741 0.96910
1.22181 0.95196 0.93717 0.95085 1.61807 1.05656 1.10377 1.47078
1.22399 0.92142 0.97911 0.99643 1.22159 1.00137 0.91798 0.92688
1.22213 0.96640 0.93969 0.88064 1.87938 1.55559 1.56816 1.29479
1.20157 0.86197 0.85245 0.96414 1.21108 1.14410 1.20218 0.98797
0.91513 1.24943 0.94992 0.96394 0.98276 1.69979 1.17619 1.29706
1.36773 0.86316 0.78169 0.78562 0.83672 1.19468 1.20935 1.20911
1.23025 0.98199 0.98538 0.97272 0.93095 0.92494 0.92726 0.89827
0.89839 0.91335 0.89412 0.95605 0.90602 0.96501 0.91522 0.91542
0.90348 0.94409 0.94581 0.94826 0.98157 0.97996 0.92854 0.92117
0.90270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.51 9.70 37.16 0.36 -1.15 16
2 C -0.12 -1.35 4.35 -89.80 -0.39 -1.74 16
3 C -0.12 -1.66 7.20 -25.83 -0.19 -1.84 16
4 C -0.10 -1.31 3.70 -89.72 -0.33 -1.64 16
5 C 0.07 0.91 4.63 -3.82 -0.02 0.89 16
6 N -0.53 -8.21 4.63 -242.91 -1.12 -9.33 16
7 C 0.03 0.35 9.29 60.06 0.56 0.91 16
8 C 0.06 0.94 5.39 -3.82 -0.02 0.92 16
9 C 0.07 1.34 6.13 37.16 0.23 1.57 16
10 O -0.38 -9.49 10.26 -35.23 -0.36 -9.86 16
11 C 0.19 5.50 5.69 36.01 0.20 5.71 16
12 C -0.51 -15.33 9.43 -34.44 -0.32 -15.66 16
13 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16
14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16
15 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16
16 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16
17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
20 C -0.13 -1.42 7.20 -25.92 -0.19 -1.60 16
21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
22 H 0.06 0.64 7.98 -51.93 -0.41 0.22 16
23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16
25 H 0.08 1.31 7.75 -51.93 -0.40 0.91 16
26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
27 H 0.09 1.08 6.36 -51.93 -0.33 0.75 16
28 H 0.03 0.32 8.07 -51.93 -0.42 -0.10 16
29 H 0.08 1.13 6.30 -51.93 -0.33 0.80 16
30 H 0.02 0.19 8.07 -51.93 -0.42 -0.23 16
31 H 0.07 0.84 7.84 -51.93 -0.41 0.44 16
32 H 0.07 0.80 6.51 -51.93 -0.34 0.46 16
33 H 0.08 1.23 7.74 -51.93 -0.40 0.82 16
34 H 0.04 0.50 8.00 -51.93 -0.42 0.09 16
35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.03 0.64 6.68 -51.93 -0.35 0.29 16
37 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16
38 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16
39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
41 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16
LS Contribution 327.83 15.07 4.94 4.94
Total: -1.00 -31.75 327.83 -8.60 -40.35
By element:
Atomic # 1 Polarization: 3.06 SS G_CDS: -7.57 Total: -4.50 kcal
Atomic # 6 Polarization: -11.92 SS G_CDS: -0.21 Total: -12.13 kcal
Atomic # 7 Polarization: -35.71 SS G_CDS: -0.39 Total: -36.10 kcal
Atomic # 8 Polarization: -9.49 SS G_CDS: -0.36 Total: -9.86 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -31.75 -8.60 -40.35 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691956273.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.037 kcal
(2) G-P(sol) polarization free energy of solvation -31.745 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.709 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.312 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds