Wall clock time and date at job start Mon Mar 30 2020 03:19:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53782 * 113.61115 * 2 1
4 4 C 1.53951 * 87.01951 * 220.04586 * 3 2 1
5 5 C 1.53004 * 113.73988 * 139.94416 * 4 3 2
6 6 N 1.46906 * 109.47159 * 87.40834 * 5 4 3
7 7 C 1.46900 * 110.99871 * 66.03892 * 6 5 4
8 8 C 1.46895 * 110.99938 * 189.99690 * 6 5 4
9 9 C 1.53004 * 109.46758 * 75.89171 * 8 6 5
10 10 O 1.42894 * 109.47502 * 64.41759 * 9 8 6
11 11 C 1.42897 * 114.00521 * 179.97438 * 10 9 8
12 12 C 1.50701 * 109.47612 * 180.02562 * 11 10 9
13 13 H 1.08002 * 120.00054 * 359.97438 * 12 11 10
14 14 C 1.37876 * 120.00103 * 179.97438 * 12 11 10
15 15 N 1.31516 * 119.99947 * 359.97438 * 14 12 11
16 16 Si 1.86802 * 119.99941 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.47075 * 359.97438 * 16 14 12
18 18 H 1.48497 * 109.47147 * 120.00194 * 16 14 12
19 19 H 1.48500 * 109.47069 * 240.00070 * 16 14 12
20 20 C 1.53776 * 87.11044 * 25.36695 * 4 3 2
21 21 H 1.09001 * 109.46472 * 159.13418 * 1 2 3
22 22 H 1.09003 * 109.47091 * 39.13193 * 1 2 3
23 23 H 1.08994 * 109.46925 * 279.13490 * 1 2 3
24 24 H 1.08996 * 112.84958 * 131.19477 * 2 1 3
25 25 H 1.08995 * 113.61648 * 334.57145 * 3 2 1
26 26 H 1.09005 * 113.61130 * 105.47527 * 3 2 1
27 27 H 1.09000 * 113.53995 * 270.81438 * 4 3 2
28 28 H 1.09000 * 109.47214 * 207.40471 * 5 4 3
29 29 H 1.08997 * 109.47554 * 327.40268 * 5 4 3
30 30 H 1.09004 * 109.46971 * 54.64470 * 7 6 5
31 31 H 1.09003 * 109.46527 * 174.63620 * 7 6 5
32 32 H 1.08996 * 109.47557 * 294.64143 * 7 6 5
33 33 H 1.09001 * 109.46907 * 195.88337 * 8 6 5
34 34 H 1.08992 * 109.47484 * 315.89161 * 8 6 5
35 35 H 1.09000 * 109.46838 * 184.41710 * 9 8 6
36 36 H 1.08993 * 109.47308 * 304.41330 * 9 8 6
37 37 H 1.09000 * 109.46877 * 300.00019 * 11 10 9
38 38 H 1.08995 * 109.47277 * 59.99557 * 11 10 9
39 39 H 0.97001 * 119.99813 * 180.02562 * 15 14 12
40 40 H 1.09004 * 113.61296 * 220.08997 * 20 4 3
41 41 H 1.08997 * 113.69351 * 89.19531 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1460 1.4091 0.0000
4 6 3.1923 0.8643 -0.9892
5 6 3.5475 1.8425 -2.1108
6 7 4.6341 2.7250 -1.6651
7 6 5.8752 1.9676 -1.4557
8 6 4.8426 3.8249 -2.6162
9 6 3.7322 4.8637 -2.4459
10 8 3.8236 5.4500 -1.1460
11 6 2.8268 6.4396 -0.8832
12 6 3.0175 6.9880 0.5075
13 1 3.8195 6.6175 1.1288
14 6 2.1681 7.9626 0.9867
15 7 1.1918 8.4141 0.2300
16 14 2.4041 8.6418 2.7108
17 1 3.5643 7.9724 3.3520
18 1 2.6541 10.1037 2.6370
19 1 1.1812 8.3887 3.5142
20 6 2.1461 -0.1864 -1.3966
21 1 -0.3632 -0.9603 -0.3661
22 1 -0.3633 0.7972 -0.6486
23 1 -0.3633 0.1631 1.0146
24 1 1.9533 -0.6615 0.7558
25 1 1.4945 2.1704 -0.4288
26 1 2.5650 1.7024 0.9626
27 1 4.0711 0.4400 -0.5035
28 1 3.8698 1.2852 -2.9904
29 1 2.6722 2.4418 -2.3611
30 1 6.1212 1.4153 -2.3628
31 1 6.6858 2.6567 -1.2188
32 1 5.7395 1.2687 -0.6304
33 1 5.8090 4.2917 -2.4256
34 1 4.8219 3.4344 -3.6335
35 1 3.8418 5.6401 -3.2031
36 1 2.7619 4.3803 -2.5590
37 1 2.9180 7.2486 -1.6080
38 1 1.8375 5.9892 -0.9641
39 1 0.5945 9.1000 0.5670
40 1 2.5651 -1.1793 -1.5600
41 1 1.4940 0.1366 -2.2081
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000691956273.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:36
Heat of formation + Delta-G solvation = -56.445385 kcal
Electronic energy + Delta-G solvation = -17812.018883 eV
Core-core repulsion = 15112.464401 eV
Total energy + Delta-G solvation = -2699.554481 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.41104 -38.84432 -37.34817 -34.88912 -31.78722 -30.69599 -28.92859 -27.99105
-26.48825 -25.25993 -24.41897 -22.61709 -21.14239 -20.25130 -18.61852 -17.47584
-17.03895 -16.75451 -16.35181 -15.93461 -15.67801 -15.55425 -14.87473 -14.40044
-14.16258 -13.95898 -13.64560 -13.54944 -13.29232 -13.10076 -13.00291 -12.74775
-12.68624 -12.45951 -12.27801 -12.17801 -11.74815 -11.70307 -11.33762 -11.21571
-10.95430 -10.89777 -10.80967 -10.16280 -9.07403 -8.31488 -6.43189 1.39009
1.40841 1.55774 2.35423 2.96659 3.02057 3.27877 3.70202 3.78272
3.85567 3.97602 4.18201 4.23621 4.37056 4.48962 4.53424 4.57342
4.60995 4.65216 4.73004 4.81667 4.82739 4.84751 4.91222 4.93270
4.96832 5.00885 5.07454 5.13364 5.19730 5.23549 5.31759 5.52797
5.56446 5.71746 5.98512 6.19666 6.27773 6.58586 6.88233 7.29204
8.81329
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.018664 B = 0.005819 C = 0.004916
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1499.820627 B = 4810.986934 C = 5694.816381
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.111 4.111
3 C -0.134 4.134
4 C -0.101 4.101
5 C 0.069 3.931
6 N -0.558 5.558
7 C 0.030 3.970
8 C 0.069 3.931
9 C 0.060 3.940
10 O -0.393 6.393
11 C 0.211 3.789
12 C -0.543 4.543
13 H 0.059 0.941
14 C 0.006 3.994
15 N -0.932 5.932
16 Si 0.982 3.018
17 H -0.265 1.265
18 H -0.269 1.269
19 H -0.271 1.271
20 C -0.119 4.119
21 H 0.070 0.930
22 H 0.044 0.956
23 H 0.052 0.948
24 H 0.096 0.904
25 H 0.056 0.944
26 H 0.046 0.954
27 H 0.095 0.905
28 H 0.047 0.953
29 H 0.055 0.945
30 H 0.038 0.962
31 H 0.063 0.937
32 H 0.072 0.928
33 H 0.078 0.922
34 H 0.070 0.930
35 H 0.045 0.955
36 H 0.031 0.969
37 H -0.017 1.017
38 H -0.021 1.021
39 H 0.270 0.730
40 H 0.083 0.917
41 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.847 -17.952 -4.811 18.980
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.129 4.129
3 C -0.171 4.171
4 C -0.119 4.119
5 C -0.059 4.059
6 N -0.282 5.282
7 C -0.117 4.117
8 C -0.059 4.059
9 C -0.018 4.018
10 O -0.313 6.313
11 C 0.136 3.864
12 C -0.580 4.580
13 H 0.077 0.923
14 C -0.192 4.192
15 N -0.572 5.572
16 Si 0.805 3.195
17 H -0.189 1.189
18 H -0.194 1.194
19 H -0.196 1.196
20 C -0.157 4.157
21 H 0.089 0.911
22 H 0.063 0.937
23 H 0.071 0.929
24 H 0.114 0.886
25 H 0.075 0.925
26 H 0.065 0.935
27 H 0.114 0.886
28 H 0.065 0.935
29 H 0.073 0.927
30 H 0.056 0.944
31 H 0.082 0.918
32 H 0.090 0.910
33 H 0.097 0.903
34 H 0.088 0.912
35 H 0.063 0.937
36 H 0.050 0.950
37 H 0.000 1.000
38 H -0.003 1.003
39 H 0.079 0.921
40 H 0.102 0.898
41 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 3.717 -17.677 -4.244 18.555
hybrid contribution -0.244 0.627 -0.314 0.742
sum 3.473 -17.050 -4.557 17.986
Atomic orbital electron populations
1.21718 0.94704 1.01906 1.01570 1.22476 0.95794 0.96411 0.98251
1.22998 0.98242 0.96641 0.99266 1.22526 0.97337 0.95947 0.96126
1.22158 0.93999 0.93492 0.96250 1.61740 1.07397 1.11387 1.47704
1.22397 0.90693 0.97792 1.00863 1.22059 0.98207 0.91065 0.94567
1.22576 0.98489 0.95054 0.85670 1.87893 1.54398 1.56167 1.32833
1.19759 0.85878 0.85226 0.95585 1.21393 1.15162 1.21694 0.99780
0.92296 1.25960 0.94103 0.96089 1.03089 1.70082 1.18141 1.29964
1.38984 0.85152 0.78571 0.78193 0.77591 1.18915 1.19428 1.19636
1.22952 0.97140 0.98913 0.96673 0.91115 0.93665 0.92907 0.88563
0.92534 0.93499 0.88642 0.93462 0.92689 0.94358 0.91827 0.90962
0.90305 0.91163 0.93728 0.95032 0.99968 1.00349 0.92087 0.89844
0.90190
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.90 9.70 71.98 0.70 -2.20 16
2 C -0.11 -2.39 4.35 -10.27 -0.04 -2.43 16
3 C -0.13 -3.87 7.20 31.18 0.22 -3.65 16
4 C -0.10 -2.43 3.70 -10.21 -0.04 -2.47 16
5 C 0.07 1.81 4.63 86.30 0.40 2.21 16
6 N -0.56 -16.94 4.63 -922.44 -4.27 -21.21 16
7 C 0.03 0.71 9.29 127.69 1.19 1.90 16
8 C 0.07 2.10 5.39 86.31 0.47 2.56 16
9 C 0.06 2.35 6.13 71.98 0.44 2.79 16
10 O -0.39 -20.41 10.26 -148.98 -1.53 -21.94 16
11 C 0.21 12.46 5.69 71.24 0.41 12.86 16
12 C -0.54 -33.72 9.43 25.60 0.24 -33.48 16
13 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16
14 C 0.01 0.34 5.46 84.65 0.46 0.80 16
15 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16
16 Si 0.98 45.78 29.54 68.60 2.03 47.81 16
17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16
18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16
19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
20 C -0.12 -2.29 7.20 31.12 0.22 -2.07 16
21 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16
22 H 0.04 1.01 7.98 -2.39 -0.02 1.00 16
23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16
24 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16
25 H 0.06 1.91 7.75 -2.39 -0.02 1.89 16
26 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16
27 H 0.10 2.17 6.36 -2.39 -0.02 2.15 16
28 H 0.05 1.05 8.07 -2.39 -0.02 1.03 16
29 H 0.05 1.66 6.30 -2.39 -0.02 1.65 16
30 H 0.04 0.74 8.07 -2.38 -0.02 0.72 16
31 H 0.06 1.52 7.84 -2.39 -0.02 1.50 16
32 H 0.07 1.60 6.51 -2.39 -0.02 1.58 16
33 H 0.08 2.38 7.74 -2.39 -0.02 2.37 16
34 H 0.07 1.70 8.00 -2.39 -0.02 1.68 16
35 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16
36 H 0.03 1.25 6.68 -2.39 -0.02 1.23 16
37 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16
38 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16
39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16
40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
41 H 0.08 1.55 8.06 -2.39 -0.02 1.53 16
Total: -1.00 -69.30 327.83 2.13 -67.16
By element:
Atomic # 1 Polarization: 7.72 SS G_CDS: 0.96 Total: 8.68 kcal
Atomic # 6 Polarization: -27.83 SS G_CDS: 4.67 Total: -23.17 kcal
Atomic # 7 Polarization: -74.55 SS G_CDS: -3.99 Total: -78.54 kcal
Atomic # 8 Polarization: -20.41 SS G_CDS: -1.53 Total: -21.94 kcal
Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal
Total: -69.30 2.13 -67.16 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691956273.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.718 kcal
(2) G-P(sol) polarization free energy of solvation -69.298 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.580 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.445 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds