Wall clock time and date at job start Mon Mar 30 2020 04:40:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52995 * 109.47248 * 2 1
4 4 C 1.52999 * 109.46892 * 120.00218 * 2 1 3
5 5 H 1.09003 * 110.83010 * 303.64442 * 4 2 1
6 6 C 1.55225 * 111.02369 * 67.35206 * 4 2 1
7 7 O 1.44380 * 103.56491 * 155.07259 * 6 4 2
8 8 C 1.43748 * 106.97705 * 320.01482 * 7 6 4
9 9 C 1.54100 * 107.29455 * 26.51151 * 8 7 6
10 10 H 1.08995 * 110.48850 * 239.16805 * 9 8 7
11 11 N 1.46895 * 110.48729 * 116.64579 * 9 8 7
12 12 C 1.46904 * 111.00014 * 88.25027 * 11 9 8
13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9
14 14 C 1.53004 * 109.47000 * 180.02562 * 13 12 11
15 15 C 1.50701 * 109.47211 * 180.02562 * 14 13 12
16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13
17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13
18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14
19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14
20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15
21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15
22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15
23 23 H 1.09000 * 109.46987 * 300.00336 * 1 2 3
24 24 H 1.09003 * 109.47040 * 59.99691 * 1 2 3
25 25 H 1.08995 * 109.47473 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.46987 * 239.99664 * 2 1 3
27 27 H 1.08996 * 109.47469 * 179.97438 * 3 2 1
28 28 H 1.09003 * 109.47353 * 300.00118 * 3 2 1
29 29 H 1.09000 * 109.47401 * 59.99917 * 3 2 1
30 30 H 1.09004 * 110.51851 * 36.58080 * 6 4 2
31 31 H 1.09000 * 110.78342 * 273.69100 * 6 4 2
32 32 H 1.09004 * 109.87948 * 267.09016 * 8 7 6
33 33 H 1.08999 * 110.00559 * 146.00380 * 8 7 6
34 34 H 1.00901 * 111.00513 * 324.28980 * 11 9 8
35 35 H 1.08995 * 109.46789 * 59.99756 * 12 11 9
36 36 H 1.08998 * 109.46713 * 300.00198 * 12 11 9
37 37 H 1.09000 * 109.47849 * 59.99743 * 13 12 11
38 38 H 1.09007 * 109.47288 * 299.99336 * 13 12 11
39 39 H 1.09000 * 109.47211 * 59.99130 * 14 13 12
40 40 H 1.09007 * 109.46376 * 299.99672 * 14 13 12
41 41 H 0.96995 * 120.00207 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 1.6370 -0.2636 2.1527
6 6 1.6995 -2.2348 1.1963
7 8 2.7017 -2.8372 2.0433
8 6 3.9399 -2.1571 1.7773
9 6 3.5876 -0.7407 1.2829
10 1 3.9930 -0.5732 0.2851
11 7 4.0943 0.2715 2.2191
12 6 5.4723 0.6552 1.8845
13 6 5.9644 1.7080 2.8796
14 6 7.3994 2.1082 2.5307
15 6 7.8844 3.1447 3.5113
16 1 7.2340 3.4844 4.3038
17 6 9.1561 3.6638 3.3929
18 7 9.9480 3.2504 2.4277
19 14 9.7545 4.9543 4.6036
20 1 8.6807 5.2465 5.5867
21 1 10.9540 4.4459 5.3166
22 1 10.1047 6.1970 3.8698
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 1.8933 -0.5139 -0.8900
27 1 3.1300 1.4425 0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.6767 1.9563 0.8900
30 1 1.7833 -2.6099 0.1762
31 1 0.7009 -2.4207 1.5916
32 1 4.4977 -2.6903 1.0074
33 1 4.5342 -2.0943 2.6889
34 1 4.0307 -0.0534 3.1723
35 1 5.4999 1.0671 0.8758
36 1 6.1165 -0.2225 1.9363
37 1 5.9368 1.2957 3.8883
38 1 5.3202 2.5859 2.8282
39 1 7.4266 2.5206 1.5221
40 1 8.0438 1.2305 2.5819
41 1 10.8426 3.6159 2.3442
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000699879826.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:43
Heat of formation + Delta-G solvation = -77.394846 kcal
Electronic energy + Delta-G solvation = -17688.464674 eV
Core-core repulsion = 14988.001756 eV
Total energy + Delta-G solvation = -2700.462918 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.01948 -36.09775 -35.65370 -33.43332 -31.43394 -29.35265 -28.25320 -27.10731
-25.67967 -23.06438 -22.51425 -21.26956 -20.37780 -19.67475 -16.52636 -16.46604
-16.14681 -15.49187 -14.76568 -14.60093 -14.31566 -14.10778 -13.61345 -13.38473
-13.18274 -12.69902 -12.31748 -12.26681 -12.04340 -11.86631 -11.41335 -11.35391
-11.17109 -10.90382 -10.75724 -10.68913 -10.59402 -10.54641 -10.41892 -9.88306
-9.68922 -9.33319 -9.03780 -8.34238 -8.15754 -5.99184 -4.01183 3.31823
3.39263 3.43831 3.80277 4.21971 4.45205 4.48163 4.70559 4.77402
4.95696 5.04349 5.19098 5.22393 5.27671 5.36871 5.52006 5.57525
5.60335 5.63540 5.71748 5.78908 5.83440 5.88156 5.89768 5.98067
6.09739 6.27560 6.31309 6.45745 6.67577 6.72645 6.78551 7.12994
7.31097 7.57519 7.69078 7.83454 8.01228 8.44559 9.06292 9.63009
11.12318
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.036570 B = 0.004091 C = 0.003854
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 765.475351 B = 6843.290808 C = 7263.323619
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.081 4.081
3 C -0.141 4.141
4 C -0.106 4.106
5 H 0.093 0.907
6 C 0.048 3.952
7 O -0.379 6.379
8 C 0.017 3.983
9 C 0.060 3.940
10 H 0.090 0.910
11 N -0.676 5.676
12 C 0.058 3.942
13 C -0.107 4.107
14 C 0.022 3.978
15 C -0.518 4.518
16 H 0.056 0.944
17 C 0.055 3.945
18 N -0.897 5.897
19 Si 0.891 3.109
20 H -0.273 1.273
21 H -0.284 1.284
22 H -0.284 1.284
23 H 0.056 0.944
24 H 0.054 0.946
25 H 0.051 0.949
26 H 0.066 0.934
27 H 0.064 0.936
28 H 0.046 0.954
29 H 0.057 0.943
30 H 0.058 0.942
31 H 0.090 0.910
32 H 0.057 0.943
33 H 0.084 0.916
34 H 0.341 0.659
35 H 0.067 0.933
36 H 0.024 0.976
37 H 0.045 0.955
38 H 0.056 0.944
39 H 0.016 0.984
40 H 0.013 0.987
41 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.269 -9.287 -5.159 20.274
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.100 4.100
3 C -0.198 4.198
4 C -0.125 4.125
5 H 0.111 0.889
6 C -0.029 4.029
7 O -0.298 6.298
8 C -0.062 4.062
9 C -0.051 4.051
10 H 0.108 0.892
11 N -0.306 5.306
12 C -0.071 4.071
13 C -0.145 4.145
14 C -0.016 4.016
15 C -0.556 4.556
16 H 0.074 0.926
17 C -0.145 4.145
18 N -0.536 5.536
19 Si 0.719 3.281
20 H -0.197 1.197
21 H -0.210 1.210
22 H -0.210 1.210
23 H 0.075 0.925
24 H 0.073 0.927
25 H 0.070 0.930
26 H 0.084 0.916
27 H 0.083 0.917
28 H 0.065 0.935
29 H 0.077 0.923
30 H 0.076 0.924
31 H 0.108 0.892
32 H 0.075 0.925
33 H 0.102 0.898
34 H 0.160 0.840
35 H 0.085 0.915
36 H 0.043 0.957
37 H 0.064 0.936
38 H 0.075 0.925
39 H 0.034 0.966
40 H 0.032 0.968
41 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -17.395 -8.893 -5.417 20.274
hybrid contribution 1.086 0.056 0.722 1.306
sum -16.309 -8.838 -4.695 19.135
Atomic orbital electron populations
1.21868 0.95323 1.01389 1.01923 1.21012 0.95405 0.97081 0.96509
1.21772 1.02132 0.94730 1.01197 1.22851 0.94736 0.95002 0.99890
0.88895 1.23692 0.92744 0.91739 0.94703 1.88860 1.18661 1.59121
1.63120 1.24041 0.87386 0.93623 1.01131 1.23016 0.95025 0.89211
0.97883 0.89162 1.60627 1.23333 1.40813 1.05854 1.22183 0.86176
0.97973 1.00720 1.21620 0.99569 0.96700 0.96585 1.19071 0.89358
0.96246 0.96921 1.21293 0.98687 1.22396 1.13245 0.92622 1.25028
0.96935 0.96918 0.95647 1.69974 1.08189 1.43530 1.31941 0.86546
0.78720 0.81544 0.81260 1.19716 1.21050 1.21021 0.92502 0.92717
0.92964 0.91585 0.91689 0.93540 0.92345 0.92417 0.89154 0.92465
0.89825 0.84045 0.91461 0.95744 0.93640 0.92529 0.96602 0.96836
0.93100
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.17 9.05 37.16 0.34 -0.84 16
2 C -0.08 -0.76 2.34 -90.62 -0.21 -0.98 16
3 C -0.14 -1.53 8.96 37.15 0.33 -1.20 16
4 C -0.11 -1.09 2.39 -88.49 -0.21 -1.31 16
5 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16
6 C 0.05 0.48 6.42 38.34 0.25 0.73 16
7 O -0.38 -4.88 11.52 -35.23 -0.41 -5.28 16
8 C 0.02 0.20 7.35 37.73 0.28 0.48 16
9 C 0.06 0.71 1.98 -66.18 -0.13 0.58 16
10 H 0.09 1.09 7.19 -51.93 -0.37 0.72 16
11 N -0.68 -9.34 6.10 -105.12 -0.64 -9.98 16
12 C 0.06 0.96 5.54 -3.82 -0.02 0.94 16
13 C -0.11 -2.18 5.41 -26.73 -0.14 -2.33 16
14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16
15 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16
16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16
17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
18 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16
19 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16
20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16
25 H 0.05 0.37 7.51 -51.93 -0.39 -0.02 16
26 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16
27 H 0.06 0.82 6.92 -51.93 -0.36 0.46 16
28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.06 0.52 8.01 -51.93 -0.42 0.11 16
31 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16
32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
33 H 0.08 1.04 7.62 -51.93 -0.40 0.64 16
34 H 0.34 4.63 8.20 -39.29 -0.32 4.30 16
35 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16
36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16
37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16
41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
LS Contribution 325.99 15.07 4.91 4.91
Total: -1.00 -29.92 325.99 -8.20 -38.12
By element:
Atomic # 1 Polarization: 6.64 SS G_CDS: -7.70 Total: -1.07 kcal
Atomic # 6 Polarization: -17.02 SS G_CDS: -0.08 Total: -17.10 kcal
Atomic # 7 Polarization: -36.48 SS G_CDS: 0.10 Total: -36.39 kcal
Atomic # 8 Polarization: -4.88 SS G_CDS: -0.41 Total: -5.28 kcal
Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -29.92 -8.20 -38.12 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000699879826.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.270 kcal
(2) G-P(sol) polarization free energy of solvation -29.924 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.194 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.395 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds