Wall clock time and date at job start Mon Mar 30 2020 04:40:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52995 * 109.47248 * 2 1
4 4 C 1.52999 * 109.46892 * 120.00218 * 2 1 3
5 5 H 1.09003 * 110.83010 * 303.64442 * 4 2 1
6 6 C 1.55225 * 111.02369 * 67.35206 * 4 2 1
7 7 O 1.44380 * 103.56491 * 155.07259 * 6 4 2
8 8 C 1.43748 * 106.97705 * 320.01482 * 7 6 4
9 9 C 1.54100 * 107.29455 * 26.51151 * 8 7 6
10 10 H 1.08995 * 110.48850 * 239.16805 * 9 8 7
11 11 N 1.46895 * 110.48729 * 116.64579 * 9 8 7
12 12 C 1.46904 * 111.00014 * 88.25027 * 11 9 8
13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9
14 14 C 1.53004 * 109.47000 * 180.02562 * 13 12 11
15 15 C 1.50701 * 109.47211 * 180.02562 * 14 13 12
16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13
17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13
18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14
19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14
20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15
21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15
22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15
23 23 H 1.09000 * 109.46987 * 300.00336 * 1 2 3
24 24 H 1.09003 * 109.47040 * 59.99691 * 1 2 3
25 25 H 1.08995 * 109.47473 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.46987 * 239.99664 * 2 1 3
27 27 H 1.08996 * 109.47469 * 179.97438 * 3 2 1
28 28 H 1.09003 * 109.47353 * 300.00118 * 3 2 1
29 29 H 1.09000 * 109.47401 * 59.99917 * 3 2 1
30 30 H 1.09004 * 110.51851 * 36.58080 * 6 4 2
31 31 H 1.09000 * 110.78342 * 273.69100 * 6 4 2
32 32 H 1.09004 * 109.87948 * 267.09016 * 8 7 6
33 33 H 1.08999 * 110.00559 * 146.00380 * 8 7 6
34 34 H 1.00901 * 111.00513 * 324.28980 * 11 9 8
35 35 H 1.08995 * 109.46789 * 59.99756 * 12 11 9
36 36 H 1.08998 * 109.46713 * 300.00198 * 12 11 9
37 37 H 1.09000 * 109.47849 * 59.99743 * 13 12 11
38 38 H 1.09007 * 109.47288 * 299.99336 * 13 12 11
39 39 H 1.09000 * 109.47211 * 59.99130 * 14 13 12
40 40 H 1.09007 * 109.46376 * 299.99672 * 14 13 12
41 41 H 0.96995 * 120.00207 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 1.6370 -0.2636 2.1527
6 6 1.6995 -2.2348 1.1963
7 8 2.7017 -2.8372 2.0433
8 6 3.9399 -2.1571 1.7773
9 6 3.5876 -0.7407 1.2829
10 1 3.9930 -0.5732 0.2851
11 7 4.0943 0.2715 2.2191
12 6 5.4723 0.6552 1.8845
13 6 5.9644 1.7080 2.8796
14 6 7.3994 2.1082 2.5307
15 6 7.8844 3.1447 3.5113
16 1 7.2340 3.4844 4.3038
17 6 9.1561 3.6638 3.3929
18 7 9.9480 3.2504 2.4277
19 14 9.7545 4.9543 4.6036
20 1 8.6807 5.2465 5.5867
21 1 10.9540 4.4459 5.3166
22 1 10.1047 6.1970 3.8698
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 1.8933 -0.5139 -0.8900
27 1 3.1300 1.4425 0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.6767 1.9563 0.8900
30 1 1.7833 -2.6099 0.1762
31 1 0.7009 -2.4207 1.5916
32 1 4.4977 -2.6903 1.0074
33 1 4.5342 -2.0943 2.6889
34 1 4.0307 -0.0534 3.1723
35 1 5.4999 1.0671 0.8758
36 1 6.1165 -0.2225 1.9363
37 1 5.9368 1.2957 3.8883
38 1 5.3202 2.5859 2.8282
39 1 7.4266 2.5206 1.5221
40 1 8.0438 1.2305 2.5819
41 1 10.8426 3.6159 2.3442
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000699879826.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:43
Heat of formation + Delta-G solvation = -96.377888 kcal
Electronic energy + Delta-G solvation = -17689.287840 eV
Core-core repulsion = 14988.001756 eV
Total energy + Delta-G solvation = -2701.286085 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.94439 -37.38078 -36.58812 -35.32033 -33.17596 -30.42744 -29.43289 -27.86503
-27.40216 -24.45058 -23.71129 -22.32768 -21.90345 -20.68246 -18.49511 -17.39529
-17.36963 -16.56500 -16.37723 -16.05834 -15.50474 -15.27789 -14.66800 -14.35318
-14.25927 -14.10306 -13.70289 -13.53783 -13.35078 -12.95751 -12.84995 -12.72558
-12.46662 -12.37989 -12.15369 -12.07834 -11.70254 -11.52945 -11.47748 -11.34773
-11.32925 -11.02902 -10.76924 -10.56107 -9.30956 -8.20644 -6.31466 1.39845
1.40111 1.53694 2.40744 2.91228 3.12693 3.15320 3.57879 3.81092
3.91593 4.08885 4.16791 4.24217 4.37169 4.39417 4.46129 4.54194
4.61410 4.71870 4.76185 4.83589 4.86369 4.91996 4.97985 5.06734
5.08991 5.12424 5.22222 5.25539 5.34024 5.51683 5.54228 5.58167
5.74841 5.82535 5.86043 6.08389 6.27130 6.42262 6.85762 7.37972
8.91468
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.036570 B = 0.004091 C = 0.003854
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 765.475351 B = 6843.290808 C = 7263.323619
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.077 4.077
3 C -0.139 4.139
4 C -0.098 4.098
5 H 0.084 0.916
6 C 0.048 3.952
7 O -0.398 6.398
8 C 0.018 3.982
9 C 0.060 3.940
10 H 0.090 0.910
11 N -0.672 5.672
12 C 0.073 3.927
13 C -0.092 4.092
14 C 0.025 3.975
15 C -0.542 4.542
16 H 0.058 0.942
17 C -0.001 4.001
18 N -0.934 5.934
19 Si 0.965 3.035
20 H -0.262 1.262
21 H -0.278 1.278
22 H -0.278 1.278
23 H 0.053 0.947
24 H 0.060 0.940
25 H 0.065 0.935
26 H 0.073 0.927
27 H 0.044 0.956
28 H 0.054 0.946
29 H 0.048 0.952
30 H 0.071 0.929
31 H 0.107 0.893
32 H 0.064 0.936
33 H 0.077 0.923
34 H 0.344 0.656
35 H 0.063 0.937
36 H 0.023 0.977
37 H 0.049 0.951
38 H 0.052 0.948
39 H -0.008 1.008
40 H -0.009 1.009
41 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.615 -9.392 -4.888 21.416
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.096 4.096
3 C -0.196 4.196
4 C -0.117 4.117
5 H 0.103 0.897
6 C -0.028 4.028
7 O -0.317 6.317
8 C -0.060 4.060
9 C -0.050 4.050
10 H 0.108 0.892
11 N -0.303 5.303
12 C -0.056 4.056
13 C -0.130 4.130
14 C -0.013 4.013
15 C -0.580 4.580
16 H 0.077 0.923
17 C -0.199 4.199
18 N -0.574 5.574
19 Si 0.789 3.211
20 H -0.186 1.186
21 H -0.203 1.203
22 H -0.203 1.203
23 H 0.072 0.928
24 H 0.079 0.921
25 H 0.084 0.916
26 H 0.092 0.908
27 H 0.063 0.937
28 H 0.074 0.926
29 H 0.067 0.933
30 H 0.089 0.911
31 H 0.125 0.875
32 H 0.082 0.918
33 H 0.095 0.905
34 H 0.163 0.837
35 H 0.081 0.919
36 H 0.042 0.958
37 H 0.068 0.932
38 H 0.071 0.929
39 H 0.010 0.990
40 H 0.009 0.991
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -18.766 -9.008 -5.147 21.443
hybrid contribution 1.489 0.068 0.605 1.609
sum -17.277 -8.940 -4.541 19.976
Atomic orbital electron populations
1.21839 0.93869 1.02348 1.02126 1.20990 0.96554 0.95833 0.96207
1.21738 1.00747 0.95969 1.01157 1.22786 0.93194 0.95679 1.00082
0.89723 1.23857 0.92859 0.90869 0.95231 1.88842 1.19244 1.59594
1.64002 1.23995 0.87429 0.93584 1.01017 1.23059 0.96214 0.88602
0.97166 0.89210 1.60558 1.21206 1.42034 1.06507 1.21857 0.87762
0.96734 0.99208 1.21364 0.96137 0.97718 0.97767 1.18976 0.92303
0.94745 0.95254 1.21729 0.99257 1.23178 1.13844 0.92325 1.25977
0.97115 0.99200 0.97559 1.70098 1.08685 1.44922 1.33723 0.85402
0.78333 0.78510 0.78828 1.18644 1.20321 1.20315 0.92802 0.92071
0.91632 0.90835 0.93716 0.92648 0.93331 0.91063 0.87481 0.91807
0.90493 0.83691 0.91873 0.95835 0.93242 0.92909 0.98991 0.99096
0.92775
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.94 9.05 71.98 0.65 -1.28 16
2 C -0.08 -1.30 2.34 -10.79 -0.03 -1.33 16
3 C -0.14 -2.88 8.96 71.98 0.64 -2.23 16
4 C -0.10 -1.87 2.39 -9.41 -0.02 -1.89 16
5 H 0.08 1.79 8.06 -2.39 -0.02 1.77 16
6 C 0.05 0.85 6.42 72.75 0.47 1.31 16
7 O -0.40 -9.58 11.52 -148.98 -1.72 -11.29 16
8 C 0.02 0.42 7.35 72.35 0.53 0.96 16
9 C 0.06 1.38 1.98 45.91 0.09 1.47 16
10 H 0.09 2.08 7.19 -2.39 -0.02 2.06 16
11 N -0.67 -18.21 6.10 -486.48 -2.97 -21.17 16
12 C 0.07 2.44 5.54 86.30 0.48 2.92 16
13 C -0.09 -3.79 5.41 30.59 0.17 -3.62 16
14 C 0.02 1.32 4.97 29.85 0.15 1.47 16
15 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16
16 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16
17 C 0.00 -0.06 5.46 84.65 0.46 0.41 16
18 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16
19 Si 0.96 44.71 29.54 68.60 2.03 46.73 16
20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16
21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
23 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16
24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
25 H 0.06 0.71 7.51 -2.39 -0.02 0.70 16
26 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16
27 H 0.04 1.10 6.92 -2.39 -0.02 1.08 16
28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16
30 H 0.07 1.08 8.01 -2.39 -0.02 1.06 16
31 H 0.11 1.53 8.10 -2.39 -0.02 1.51 16
32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16
33 H 0.08 1.86 7.62 -2.39 -0.02 1.84 16
34 H 0.34 9.07 8.20 -89.69 -0.74 8.34 16
35 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16
36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16
37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16
38 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16
39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16
40 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16
41 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16
Total: -1.00 -63.88 325.99 1.69 -62.19
By element:
Atomic # 1 Polarization: 13.28 SS G_CDS: 0.23 Total: 13.52 kcal
Atomic # 6 Polarization: -36.76 SS G_CDS: 3.83 Total: -32.93 kcal
Atomic # 7 Polarization: -75.54 SS G_CDS: -2.68 Total: -78.22 kcal
Atomic # 8 Polarization: -9.58 SS G_CDS: -1.72 Total: -11.29 kcal
Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal
Total: -63.88 1.69 -62.19 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000699879826.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.184 kcal
(2) G-P(sol) polarization free energy of solvation -63.880 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.064 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds