Wall clock time and date at job start Mon Mar 30 2020 04:40:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53001 * 109.47391 * 2 1
4 4 C 1.53010 * 109.46879 * 119.99556 * 2 1 3
5 5 H 1.09000 * 110.56091 * 51.18977 * 4 2 1
6 6 C 1.54478 * 110.50862 * 288.51141 * 4 2 1
7 7 O 1.44427 * 104.80078 * 217.37746 * 6 4 2
8 8 C 1.44425 * 105.27564 * 40.50955 * 7 6 4
9 9 C 1.54477 * 104.80257 * 319.49153 * 8 7 6
10 10 H 1.09003 * 110.50639 * 265.19475 * 9 8 7
11 11 N 1.46894 * 110.50767 * 142.62667 * 9 8 7
12 12 C 1.46906 * 111.00541 * 74.66206 * 11 9 8
13 13 C 1.53001 * 109.47160 * 179.97438 * 12 11 9
14 14 C 1.52999 * 109.47071 * 179.97438 * 13 12 11
15 15 C 1.50697 * 109.47035 * 180.02562 * 14 13 12
16 16 H 1.07998 * 120.00530 * 0.02562 * 15 14 13
17 17 C 1.37876 * 119.99638 * 180.02562 * 15 14 13
18 18 N 1.31512 * 120.00210 * 0.02562 * 17 15 14
19 19 Si 1.86811 * 119.99862 * 179.97438 * 17 15 14
20 20 H 1.48494 * 109.46711 * 60.00018 * 19 17 15
21 21 H 1.48505 * 109.46837 * 179.97438 * 19 17 15
22 22 H 1.48492 * 109.46739 * 300.00132 * 19 17 15
23 23 H 1.08993 * 109.46973 * 305.00731 * 1 2 3
24 24 H 1.09003 * 109.46606 * 65.00799 * 1 2 3
25 25 H 1.08997 * 109.47124 * 185.00245 * 1 2 3
26 26 H 1.09000 * 109.47294 * 239.99219 * 2 1 3
27 27 H 1.08997 * 109.47435 * 171.29149 * 3 2 1
28 28 H 1.09001 * 109.46901 * 291.29073 * 3 2 1
29 29 H 1.09002 * 109.47339 * 51.28484 * 3 2 1
30 30 H 1.09004 * 110.37303 * 98.54786 * 6 4 2
31 31 H 1.09005 * 110.46664 * 336.25217 * 6 4 2
32 32 H 1.08997 * 110.36749 * 200.65607 * 8 7 6
33 33 H 1.08995 * 110.46092 * 78.37499 * 8 7 6
34 34 H 1.00902 * 110.99823 * 198.62037 * 11 9 8
35 35 H 1.08999 * 109.47024 * 299.99967 * 12 11 9
36 36 H 1.09002 * 109.46753 * 59.99863 * 12 11 9
37 37 H 1.08999 * 109.47411 * 300.00080 * 13 12 11
38 38 H 1.09001 * 109.46687 * 60.00112 * 13 12 11
39 39 H 1.08999 * 109.47248 * 300.00400 * 14 13 12
40 40 H 1.09002 * 109.46618 * 60.00351 * 14 13 12
41 41 H 0.97010 * 120.00090 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 1.2494
5 1 1.5645 -1.6970 1.3490
6 6 1.7873 0.1354 2.5098
7 8 2.9475 -0.0816 3.3421
8 6 4.0711 -0.0865 2.4347
9 6 3.5769 -0.8705 1.1988
10 1 3.8635 -1.9196 1.2725
11 7 4.1115 -0.2776 -0.0343
12 6 5.5340 -0.6041 -0.2019
13 6 6.0536 0.0288 -1.4943
14 6 7.5353 -0.3107 -1.6685
15 6 8.0473 0.3132 -2.9412
16 1 7.3826 0.8941 -3.5633
17 6 9.3644 0.1423 -3.3113
18 7 10.1737 -0.5655 -2.5540
19 14 9.9990 0.9151 -4.8892
20 1 9.8342 2.3892 -4.8195
21 1 11.4371 0.5856 -5.0582
22 1 9.2301 0.3851 -6.0438
23 1 -0.3633 0.5895 0.8417
24 1 -0.3632 0.4342 -0.9315
25 1 -0.3633 -1.0237 0.0896
26 1 1.8934 -0.5139 -0.8899
27 1 3.1189 1.4464 0.1556
28 1 1.8094 1.9094 -0.9575
29 1 1.5552 1.9994 0.8019
30 1 0.8851 -0.1996 3.0217
31 1 1.7027 1.1891 2.2439
32 1 4.9233 -0.5919 2.8889
33 1 4.3398 0.9322 2.1554
34 1 3.5761 -0.5704 -0.8379
35 1 6.0982 -0.2155 0.6459
36 1 5.6547 -1.6861 -0.2535
37 1 5.4893 -0.3601 -2.3419
38 1 5.9327 1.1109 -1.4431
39 1 8.0993 0.0786 -0.8209
40 1 7.6564 -1.3927 -1.7195
41 1 11.1004 -0.6860 -2.8146
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000699879828.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:48
Heat of formation + Delta-G solvation = -59.453278 kcal
Electronic energy + Delta-G solvation = -17953.308683 eV
Core-core repulsion = 15253.623770 eV
Total energy + Delta-G solvation = -2699.684913 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.25577 -36.28427 -35.33741 -33.35934 -31.38201 -29.20153 -28.00701 -27.17801
-25.78965 -23.94794 -22.45384 -21.06337 -20.15071 -18.87212 -16.63792 -16.35134
-16.15185 -15.69577 -15.34791 -14.50944 -14.28109 -14.14853 -13.67060 -13.49718
-12.91548 -12.46646 -12.41453 -12.08752 -11.74813 -11.70525 -11.46821 -11.38367
-11.18929 -10.86603 -10.69479 -10.66702 -10.55153 -10.46734 -10.38818 -9.70680
-9.64759 -9.33758 -9.06534 -8.33812 -8.13765 -5.99025 -4.01309 3.34023
3.38282 3.40856 3.89999 4.32839 4.42126 4.47892 4.68492 4.74609
5.04311 5.11123 5.21080 5.32098 5.35367 5.36782 5.55228 5.59726
5.71017 5.73463 5.79223 5.80965 5.86244 5.90207 5.96348 6.05770
6.18379 6.27766 6.29952 6.62803 6.67261 6.76956 6.82553 7.12389
7.30126 7.53991 7.68384 7.83248 8.01063 8.44118 9.05700 9.62723
11.12345
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.037504 B = 0.004319 C = 0.004025
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 746.404587 B = 6481.628507 C = 6955.669131
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.079 4.079
3 C -0.166 4.166
4 C -0.116 4.116
5 H 0.078 0.922
6 C 0.046 3.954
7 O -0.380 6.380
8 C 0.054 3.946
9 C 0.055 3.945
10 H 0.051 0.949
11 N -0.674 5.674
12 C 0.052 3.948
13 C -0.106 4.106
14 C 0.022 3.978
15 C -0.520 4.520
16 H 0.054 0.946
17 C 0.056 3.944
18 N -0.897 5.897
19 Si 0.892 3.108
20 H -0.277 1.277
21 H -0.287 1.287
22 H -0.277 1.277
23 H 0.052 0.948
24 H 0.055 0.945
25 H 0.050 0.950
26 H 0.072 0.928
27 H 0.105 0.895
28 H 0.046 0.954
29 H 0.044 0.956
30 H 0.083 0.917
31 H 0.072 0.928
32 H 0.087 0.913
33 H 0.073 0.927
34 H 0.343 0.657
35 H 0.067 0.933
36 H 0.025 0.975
37 H 0.044 0.956
38 H 0.056 0.944
39 H 0.016 0.984
40 H 0.013 0.987
41 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.050 0.195 7.796 19.663
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.097 4.097
3 C -0.223 4.223
4 C -0.135 4.135
5 H 0.097 0.903
6 C -0.030 4.030
7 O -0.298 6.298
8 C -0.024 4.024
9 C -0.056 4.056
10 H 0.069 0.931
11 N -0.308 5.308
12 C -0.076 4.076
13 C -0.144 4.144
14 C -0.015 4.015
15 C -0.558 4.558
16 H 0.073 0.927
17 C -0.145 4.145
18 N -0.536 5.536
19 Si 0.720 3.280
20 H -0.202 1.202
21 H -0.213 1.213
22 H -0.203 1.203
23 H 0.072 0.928
24 H 0.074 0.926
25 H 0.069 0.931
26 H 0.090 0.910
27 H 0.123 0.877
28 H 0.066 0.934
29 H 0.063 0.937
30 H 0.101 0.899
31 H 0.090 0.910
32 H 0.105 0.895
33 H 0.092 0.908
34 H 0.165 0.835
35 H 0.086 0.914
36 H 0.044 0.956
37 H 0.063 0.937
38 H 0.075 0.925
39 H 0.034 0.966
40 H 0.031 0.969
41 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -17.732 0.702 8.336 19.606
hybrid contribution 0.385 -0.665 -1.381 1.580
sum -17.348 0.037 6.955 18.690
Atomic orbital electron populations
1.21909 0.95728 1.01304 1.01734 1.20935 0.94657 0.97505 0.96642
1.22327 1.05456 0.94026 1.00453 1.22686 0.94966 0.99579 0.96247
0.90334 1.23627 0.89386 0.99902 0.90129 1.89094 1.16146 1.93799
1.30781 1.23491 0.89464 1.00783 0.88612 1.22857 0.93652 0.96901
0.92173 0.93068 1.60971 1.04251 1.61526 1.04056 1.22232 0.87109
0.97818 1.00426 1.21610 0.99302 0.99932 0.93530 1.19058 0.88941
0.96680 0.96862 1.21212 0.95181 1.32270 1.07142 0.92745 1.25024
0.97051 0.95366 0.97012 1.69957 1.05540 1.40137 1.37967 0.86661
0.77720 0.79800 0.83839 1.20218 1.21308 1.20283 0.92842 0.92633
0.93086 0.91005 0.87707 0.93449 0.93726 0.89895 0.90996 0.89485
0.90847 0.83531 0.91404 0.95641 0.93708 0.92524 0.96588 0.96863
0.92978
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.23 9.01 37.16 0.33 -0.89 16
2 C -0.08 -0.76 2.22 -90.61 -0.20 -0.96 16
3 C -0.17 -1.76 8.06 37.16 0.30 -1.46 16
4 C -0.12 -1.19 2.92 -89.05 -0.26 -1.45 16
5 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
6 C 0.05 0.49 6.46 37.93 0.24 0.73 16
7 O -0.38 -5.04 11.65 -35.23 -0.41 -5.45 16
8 C 0.05 0.68 6.68 37.93 0.25 0.94 16
9 C 0.05 0.67 3.13 -66.15 -0.21 0.46 16
10 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16
11 N -0.67 -8.96 3.21 -105.07 -0.34 -9.30 16
12 C 0.05 0.86 5.53 -3.82 -0.02 0.84 16
13 C -0.11 -2.13 5.41 -26.73 -0.14 -2.27 16
14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16
15 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16
16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16
17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
18 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16
19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16
20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
23 H 0.05 0.41 7.80 -51.93 -0.40 0.01 16
24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
26 H 0.07 0.72 6.35 -51.93 -0.33 0.39 16
27 H 0.10 1.32 5.51 -51.93 -0.29 1.03 16
28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.04 0.44 6.21 -51.93 -0.32 0.12 16
30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16
31 H 0.07 0.75 5.31 -51.93 -0.28 0.47 16
32 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16
33 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16
34 H 0.34 4.36 6.24 -39.29 -0.25 4.11 16
35 H 0.07 1.14 7.66 -51.93 -0.40 0.74 16
36 H 0.03 0.43 8.13 -51.93 -0.42 0.01 16
37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16
38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
40 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16
41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
LS Contribution 314.77 15.07 4.74 4.74
Total: -1.00 -29.56 314.77 -7.83 -37.39
By element:
Atomic # 1 Polarization: 6.72 SS G_CDS: -7.29 Total: -0.57 kcal
Atomic # 6 Polarization: -16.92 SS G_CDS: -0.25 Total: -17.18 kcal
Atomic # 7 Polarization: -36.04 SS G_CDS: 0.40 Total: -35.64 kcal
Atomic # 8 Polarization: -5.04 SS G_CDS: -0.41 Total: -5.45 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal
Total LS contribution 4.74 Total: 4.74 kcal
Total: -29.56 -7.83 -37.39 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000699879828.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.062 kcal
(2) G-P(sol) polarization free energy of solvation -29.561 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.622 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.453 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds