Wall clock time and date at job start Mon Mar 30 2020 04:40:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53001 * 109.47391 * 2 1
4 4 C 1.53010 * 109.46879 * 119.99556 * 2 1 3
5 5 H 1.09000 * 110.56091 * 51.18977 * 4 2 1
6 6 C 1.54478 * 110.50862 * 288.51141 * 4 2 1
7 7 O 1.44427 * 104.80078 * 217.37746 * 6 4 2
8 8 C 1.44425 * 105.27564 * 40.50955 * 7 6 4
9 9 C 1.54477 * 104.80257 * 319.49153 * 8 7 6
10 10 H 1.09003 * 110.50639 * 265.19475 * 9 8 7
11 11 N 1.46894 * 110.50767 * 142.62667 * 9 8 7
12 12 C 1.46906 * 111.00541 * 74.66206 * 11 9 8
13 13 C 1.53001 * 109.47160 * 179.97438 * 12 11 9
14 14 C 1.52999 * 109.47071 * 179.97438 * 13 12 11
15 15 C 1.50697 * 109.47035 * 180.02562 * 14 13 12
16 16 H 1.07998 * 120.00530 * 0.02562 * 15 14 13
17 17 C 1.37876 * 119.99638 * 180.02562 * 15 14 13
18 18 N 1.31512 * 120.00210 * 0.02562 * 17 15 14
19 19 Si 1.86811 * 119.99862 * 179.97438 * 17 15 14
20 20 H 1.48494 * 109.46711 * 60.00018 * 19 17 15
21 21 H 1.48505 * 109.46837 * 179.97438 * 19 17 15
22 22 H 1.48492 * 109.46739 * 300.00132 * 19 17 15
23 23 H 1.08993 * 109.46973 * 305.00731 * 1 2 3
24 24 H 1.09003 * 109.46606 * 65.00799 * 1 2 3
25 25 H 1.08997 * 109.47124 * 185.00245 * 1 2 3
26 26 H 1.09000 * 109.47294 * 239.99219 * 2 1 3
27 27 H 1.08997 * 109.47435 * 171.29149 * 3 2 1
28 28 H 1.09001 * 109.46901 * 291.29073 * 3 2 1
29 29 H 1.09002 * 109.47339 * 51.28484 * 3 2 1
30 30 H 1.09004 * 110.37303 * 98.54786 * 6 4 2
31 31 H 1.09005 * 110.46664 * 336.25217 * 6 4 2
32 32 H 1.08997 * 110.36749 * 200.65607 * 8 7 6
33 33 H 1.08995 * 110.46092 * 78.37499 * 8 7 6
34 34 H 1.00902 * 110.99823 * 198.62037 * 11 9 8
35 35 H 1.08999 * 109.47024 * 299.99967 * 12 11 9
36 36 H 1.09002 * 109.46753 * 59.99863 * 12 11 9
37 37 H 1.08999 * 109.47411 * 300.00080 * 13 12 11
38 38 H 1.09001 * 109.46687 * 60.00112 * 13 12 11
39 39 H 1.08999 * 109.47248 * 300.00400 * 14 13 12
40 40 H 1.09002 * 109.46618 * 60.00351 * 14 13 12
41 41 H 0.97010 * 120.00090 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 1.2494
5 1 1.5645 -1.6970 1.3490
6 6 1.7873 0.1354 2.5098
7 8 2.9475 -0.0816 3.3421
8 6 4.0711 -0.0865 2.4347
9 6 3.5769 -0.8705 1.1988
10 1 3.8635 -1.9196 1.2725
11 7 4.1115 -0.2776 -0.0343
12 6 5.5340 -0.6041 -0.2019
13 6 6.0536 0.0288 -1.4943
14 6 7.5353 -0.3107 -1.6685
15 6 8.0473 0.3132 -2.9412
16 1 7.3826 0.8941 -3.5633
17 6 9.3644 0.1423 -3.3113
18 7 10.1737 -0.5655 -2.5540
19 14 9.9990 0.9151 -4.8892
20 1 9.8342 2.3892 -4.8195
21 1 11.4371 0.5856 -5.0582
22 1 9.2301 0.3851 -6.0438
23 1 -0.3633 0.5895 0.8417
24 1 -0.3632 0.4342 -0.9315
25 1 -0.3633 -1.0237 0.0896
26 1 1.8934 -0.5139 -0.8899
27 1 3.1189 1.4464 0.1556
28 1 1.8094 1.9094 -0.9575
29 1 1.5552 1.9994 0.8019
30 1 0.8851 -0.1996 3.0217
31 1 1.7027 1.1891 2.2439
32 1 4.9233 -0.5919 2.8889
33 1 4.3398 0.9322 2.1554
34 1 3.5761 -0.5704 -0.8379
35 1 6.0982 -0.2155 0.6459
36 1 5.6547 -1.6861 -0.2535
37 1 5.4893 -0.3601 -2.3419
38 1 5.9327 1.1109 -1.4431
39 1 8.0993 0.0786 -0.8209
40 1 7.6564 -1.3927 -1.7195
41 1 11.1004 -0.6860 -2.8146
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000699879828.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:47
Heat of formation + Delta-G solvation = -76.946685 kcal
Electronic energy + Delta-G solvation = -17954.067255 eV
Core-core repulsion = 15253.623770 eV
Total energy + Delta-G solvation = -2700.443484 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.19689 -37.47777 -36.45758 -35.18904 -33.08754 -30.35878 -29.10462 -28.00465
-27.42298 -25.05870 -23.98703 -22.07321 -21.85033 -19.75062 -18.48168 -17.53745
-17.23195 -16.78013 -16.53514 -16.32707 -15.55973 -15.30090 -14.76301 -14.40446
-14.27611 -14.05571 -13.57002 -13.29303 -13.19767 -12.91285 -12.69127 -12.55623
-12.49301 -12.37854 -12.17388 -12.04714 -11.61886 -11.51766 -11.42845 -11.33355
-11.26721 -11.04259 -10.57884 -10.54121 -9.26087 -8.19352 -6.30375 1.40566
1.43632 1.51527 2.41547 2.92006 3.13946 3.30184 3.51522 3.81954
3.88643 4.17529 4.23578 4.26810 4.38034 4.40429 4.49929 4.53116
4.73059 4.74953 4.82571 4.86781 4.88853 4.96615 5.00125 5.07023
5.13404 5.20564 5.26311 5.29784 5.38436 5.52073 5.52946 5.74355
5.76329 5.86386 5.87234 6.09349 6.27846 6.44613 6.86793 7.39004
8.92337
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.037504 B = 0.004319 C = 0.004025
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 746.404587 B = 6481.628507 C = 6955.669131
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.075 4.075
3 C -0.163 4.163
4 C -0.108 4.108
5 H 0.091 0.909
6 C 0.043 3.957
7 O -0.396 6.396
8 C 0.053 3.947
9 C 0.055 3.945
10 H 0.050 0.950
11 N -0.664 5.664
12 C 0.066 3.934
13 C -0.090 4.090
14 C 0.025 3.975
15 C -0.543 4.543
16 H 0.060 0.940
17 C -0.001 4.001
18 N -0.934 5.934
19 Si 0.964 3.036
20 H -0.267 1.267
21 H -0.283 1.283
22 H -0.266 1.266
23 H 0.059 0.941
24 H 0.057 0.943
25 H 0.058 0.942
26 H 0.069 0.931
27 H 0.084 0.916
28 H 0.046 0.954
29 H 0.050 0.950
30 H 0.102 0.898
31 H 0.074 0.926
32 H 0.085 0.915
33 H 0.065 0.935
34 H 0.350 0.650
35 H 0.062 0.938
36 H 0.022 0.978
37 H 0.050 0.950
38 H 0.054 0.946
39 H -0.010 1.010
40 H -0.011 1.011
41 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.697 0.569 7.124 20.953
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.094 4.094
3 C -0.220 4.220
4 C -0.127 4.127
5 H 0.109 0.891
6 C -0.033 4.033
7 O -0.315 6.315
8 C -0.024 4.024
9 C -0.056 4.056
10 H 0.068 0.932
11 N -0.299 5.299
12 C -0.063 4.063
13 C -0.128 4.128
14 C -0.013 4.013
15 C -0.581 4.581
16 H 0.078 0.922
17 C -0.198 4.198
18 N -0.575 5.575
19 Si 0.789 3.211
20 H -0.192 1.192
21 H -0.209 1.209
22 H -0.191 1.191
23 H 0.078 0.922
24 H 0.076 0.924
25 H 0.077 0.923
26 H 0.087 0.913
27 H 0.103 0.897
28 H 0.065 0.935
29 H 0.069 0.931
30 H 0.120 0.880
31 H 0.092 0.908
32 H 0.104 0.896
33 H 0.083 0.917
34 H 0.172 0.828
35 H 0.080 0.920
36 H 0.040 0.960
37 H 0.069 0.931
38 H 0.073 0.927
39 H 0.009 0.991
40 H 0.008 0.992
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -19.407 1.081 7.664 20.894
hybrid contribution 0.876 -0.782 -1.125 1.626
sum -18.531 0.299 6.539 19.653
Atomic orbital electron populations
1.21871 0.94233 1.02030 1.02183 1.20902 0.95863 0.96567 0.96100
1.22263 1.04146 0.94948 1.00661 1.22670 0.93253 1.00287 0.96476
0.89114 1.23795 0.89179 1.00215 0.90116 1.89079 1.16924 1.93887
1.31612 1.23451 0.89650 1.00376 0.88904 1.22874 0.95180 0.96465
0.91064 0.93250 1.60907 1.02426 1.61607 1.04963 1.21919 0.89071
0.97078 0.98191 1.21342 0.95703 1.00020 0.95718 1.18973 0.92387
0.94763 0.95189 1.21677 0.95800 1.32488 1.08133 0.92182 1.25982
0.97352 0.95778 1.00727 1.70093 1.05938 1.41450 1.39998 0.85512
0.77118 0.79131 0.79365 1.19189 1.20883 1.19117 0.92237 0.92377
0.92257 0.91270 0.89697 0.93509 0.93083 0.87994 0.90798 0.89634
0.91674 0.82782 0.91972 0.96007 0.93092 0.92693 0.99118 0.99238
0.92809
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.99 9.01 71.98 0.65 -1.34 16
2 C -0.08 -1.29 2.22 -10.79 -0.02 -1.31 16
3 C -0.16 -3.21 8.06 71.98 0.58 -2.63 16
4 C -0.11 -1.99 2.92 -9.78 -0.03 -2.02 16
5 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16
6 C 0.04 0.82 6.46 72.48 0.47 1.29 16
7 O -0.40 -10.05 11.65 -148.98 -1.74 -11.79 16
8 C 0.05 1.34 6.68 72.48 0.48 1.82 16
9 C 0.05 1.26 3.13 45.93 0.14 1.41 16
10 H 0.05 1.19 8.07 -2.39 -0.02 1.17 16
11 N -0.66 -17.08 3.21 -486.35 -1.56 -18.65 16
12 C 0.07 2.18 5.53 86.30 0.48 2.66 16
13 C -0.09 -3.62 5.41 30.59 0.17 -3.46 16
14 C 0.02 1.30 4.97 29.85 0.15 1.45 16
15 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16
16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16
17 C 0.00 -0.05 5.46 84.65 0.46 0.42 16
18 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16
19 Si 0.96 44.40 29.54 68.60 2.03 46.43 16
20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16
23 H 0.06 0.75 7.80 -2.39 -0.02 0.73 16
24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
26 H 0.07 1.24 6.35 -2.39 -0.02 1.22 16
27 H 0.08 2.05 5.51 -2.39 -0.01 2.03 16
28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
29 H 0.05 0.93 6.21 -2.39 -0.01 0.91 16
30 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16
31 H 0.07 1.39 5.31 -2.38 -0.01 1.37 16
32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16
33 H 0.07 1.73 8.06 -2.39 -0.02 1.71 16
34 H 0.35 8.37 6.24 -89.69 -0.56 7.81 16
35 H 0.06 2.12 7.66 -2.39 -0.02 2.10 16
36 H 0.02 0.73 8.13 -2.39 -0.02 0.71 16
37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16
38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16
39 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16
40 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16
41 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16
Total: -1.00 -63.13 314.77 3.19 -59.94
By element:
Atomic # 1 Polarization: 13.30 SS G_CDS: 0.42 Total: 13.72 kcal
Atomic # 6 Polarization: -36.35 SS G_CDS: 3.76 Total: -32.59 kcal
Atomic # 7 Polarization: -74.43 SS G_CDS: -1.28 Total: -75.71 kcal
Atomic # 8 Polarization: -10.05 SS G_CDS: -1.74 Total: -11.79 kcal
Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal
Total: -63.13 3.19 -59.94 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000699879828.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.005 kcal
(2) G-P(sol) polarization free energy of solvation -63.134 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.941 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.947 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds