Wall clock time and date at job start Mon Mar 30 2020 03:19:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53004 * 115.56078 * 2 1
4 4 C 1.52993 * 117.49919 * 214.30839 * 2 1 3
5 5 C 1.52996 * 60.00123 * 252.51054 * 4 2 1
6 6 C 1.52997 * 117.49891 * 107.51121 * 5 4 2
7 7 C 1.52997 * 117.49882 * 252.51209 * 5 4 2
8 8 N 1.46904 * 109.46950 * 248.60979 * 7 5 4
9 9 C 1.46899 * 111.00029 * 180.02562 * 8 7 5
10 10 C 1.52997 * 109.47254 * 179.97438 * 9 8 7
11 11 O 1.42904 * 109.47396 * 64.99580 * 10 9 8
12 12 C 1.42896 * 114.00313 * 180.02562 * 11 10 9
13 13 C 1.50699 * 109.46851 * 180.02562 * 12 11 10
14 14 H 1.07999 * 120.00616 * 359.97438 * 13 12 11
15 15 C 1.37884 * 119.99887 * 180.02562 * 13 12 11
16 16 N 1.31513 * 119.99815 * 359.97438 * 15 13 12
17 17 Si 1.86800 * 120.00265 * 179.97438 * 15 13 12
18 18 H 1.48500 * 109.47002 * 359.97438 * 17 15 13
19 19 H 1.48497 * 109.47253 * 119.99229 * 17 15 13
20 20 H 1.48498 * 109.46902 * 239.99613 * 17 15 13
21 21 H 1.08997 * 109.46999 * 274.31647 * 1 2 3
22 22 H 1.09001 * 109.47148 * 34.31178 * 1 2 3
23 23 H 1.08995 * 109.47418 * 154.31087 * 1 2 3
24 24 H 1.09003 * 109.46599 * 205.69056 * 3 2 1
25 25 H 1.09003 * 109.46929 * 325.68486 * 3 2 1
26 26 H 1.08999 * 109.47167 * 85.68768 * 3 2 1
27 27 H 1.09004 * 117.49891 * 145.01944 * 4 2 1
28 28 H 1.09002 * 117.49995 * 0.02562 * 4 2 1
29 29 H 1.08996 * 109.47201 * 231.25437 * 6 5 4
30 30 H 1.09003 * 109.47326 * 351.25530 * 6 5 4
31 31 H 1.09007 * 109.47149 * 111.25111 * 6 5 4
32 32 H 1.08995 * 109.47319 * 128.60909 * 7 5 4
33 33 H 1.09003 * 109.47435 * 8.60233 * 7 5 4
34 34 H 1.00908 * 110.99583 * 303.94989 * 8 7 5
35 35 H 1.09002 * 109.47043 * 299.99792 * 9 8 7
36 36 H 1.09001 * 109.47354 * 59.99854 * 9 8 7
37 37 H 1.09001 * 109.47630 * 184.99901 * 10 9 8
38 38 H 1.09004 * 109.47346 * 305.00031 * 10 9 8
39 39 H 1.08999 * 109.46799 * 300.00326 * 12 11 10
40 40 H 1.08998 * 109.47187 * 59.99969 * 12 11 10
41 41 H 0.97003 * 120.00101 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1902 1.3803 0.0000
4 6 2.2365 -1.1210 -0.7649
5 6 2.2365 -1.1209 0.7650
6 6 1.3593 -2.1564 1.4715
7 6 3.5490 -0.7758 1.4715
8 7 4.0714 -1.9719 2.1457
9 6 5.3337 -1.6775 2.8369
10 6 5.8453 -2.9441 3.5259
11 8 6.1743 -3.9237 2.5389
12 6 6.6642 -5.1522 3.0798
13 6 6.9781 -6.1061 1.9561
14 1 6.8190 -5.8045 0.9313
15 6 7.4676 -7.3643 2.2363
16 7 7.6609 -7.7317 3.4841
17 14 7.8560 -8.5469 0.8435
18 1 7.5526 -7.8970 -0.4568
19 1 9.2946 -8.9122 0.8909
20 1 7.0292 -9.7718 0.9891
21 1 -0.3633 0.0773 1.0247
22 1 -0.3633 0.8488 -0.5793
23 1 -0.3634 -0.9260 -0.4454
24 1 3.1824 1.3084 -0.4455
25 1 1.5812 2.0743 -0.5794
26 1 2.2773 1.7414 1.0247
27 1 3.1716 -0.8751 -1.2682
28 1 1.6112 -1.8583 -1.2685
29 1 0.7314 -1.6577 2.2098
30 1 0.7285 -2.6592 0.7383
31 1 1.9929 -2.8902 1.9697
32 1 3.3701 0.0075 2.2080
33 1 4.2754 -0.4259 0.7379
34 1 3.3900 -2.3534 2.7847
35 1 6.0726 -1.3335 2.1131
36 1 5.1669 -0.9006 3.5830
37 1 6.7333 -2.7059 4.1115
38 1 5.0708 -3.3377 4.1843
39 1 7.5691 -4.9600 3.6563
40 1 5.9065 -5.5914 3.7286
41 1 8.0056 -8.6168 3.6813
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000702425026.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:19
Heat of formation + Delta-G solvation = -37.007966 kcal
Electronic energy + Delta-G solvation = -17370.844712 eV
Core-core repulsion = 14672.133100 eV
Total energy + Delta-G solvation = -2698.711612 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.45252 -36.97999 -35.07348 -32.63230 -30.83103 -29.00850 -28.20154 -27.05458
-26.56064 -24.42576 -22.24532 -21.44576 -20.41527 -17.79674 -16.39492 -15.98421
-15.46377 -15.38464 -14.88008 -14.47429 -14.24177 -13.96032 -13.50700 -13.22433
-13.08754 -12.74793 -12.49186 -12.27078 -12.11047 -11.97163 -11.80514 -11.59148
-11.42235 -11.15912 -10.83995 -10.73893 -10.69950 -10.42693 -9.95614 -9.67195
-9.38461 -9.01003 -8.74926 -8.11251 -8.05411 -6.05027 -4.05579 3.33455
3.39632 3.47198 3.59364 4.30257 4.40927 4.60177 4.70319 4.76349
4.93925 4.99639 5.14201 5.31570 5.36028 5.43536 5.49464 5.61732
5.65401 5.70387 5.75721 5.77176 5.82240 5.87293 5.90628 5.93404
5.96720 6.06026 6.13150 6.19131 6.22564 6.34607 6.42618 7.16713
7.27110 7.50205 7.61747 7.87661 8.23622 8.68859 9.09910 9.59163
11.06786
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.030706 B = 0.004108 C = 0.003847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 911.668575 B = 6815.120286 C = 7277.553417
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.132 4.132
3 C -0.114 4.114
4 C -0.158 4.158
5 C -0.109 4.109
6 C -0.119 4.119
7 C 0.099 3.901
8 N -0.674 5.674
9 C 0.064 3.936
10 C 0.065 3.935
11 O -0.380 6.380
12 C 0.193 3.807
13 C -0.509 4.509
14 H 0.067 0.933
15 C 0.054 3.946
16 N -0.901 5.901
17 Si 0.907 3.093
18 H -0.270 1.270
19 H -0.283 1.283
20 H -0.283 1.283
21 H 0.057 0.943
22 H 0.056 0.944
23 H 0.056 0.944
24 H 0.057 0.943
25 H 0.057 0.943
26 H 0.056 0.944
27 H 0.093 0.907
28 H 0.092 0.908
29 H 0.052 0.948
30 H 0.056 0.944
31 H 0.076 0.924
32 H 0.026 0.974
33 H 0.071 0.929
34 H 0.339 0.661
35 H 0.077 0.923
36 H 0.032 0.968
37 H 0.040 0.960
38 H 0.033 0.967
39 H 0.002 0.998
40 H 0.003 0.997
41 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.632 16.693 -3.520 21.228
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.133 4.133
3 C -0.171 4.171
4 C -0.195 4.195
5 C -0.109 4.109
6 C -0.176 4.176
7 C -0.030 4.030
8 N -0.307 5.307
9 C -0.065 4.065
10 C -0.013 4.013
11 O -0.299 6.299
12 C 0.119 3.881
13 C -0.547 4.547
14 H 0.086 0.914
15 C -0.146 4.146
16 N -0.541 5.541
17 Si 0.734 3.266
18 H -0.194 1.194
19 H -0.209 1.209
20 H -0.209 1.209
21 H 0.075 0.925
22 H 0.075 0.925
23 H 0.075 0.925
24 H 0.076 0.924
25 H 0.076 0.924
26 H 0.075 0.925
27 H 0.111 0.889
28 H 0.110 0.890
29 H 0.071 0.929
30 H 0.075 0.925
31 H 0.094 0.906
32 H 0.044 0.956
33 H 0.090 0.910
34 H 0.160 0.840
35 H 0.095 0.905
36 H 0.050 0.950
37 H 0.058 0.942
38 H 0.051 0.949
39 H 0.020 0.980
40 H 0.021 0.979
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -12.270 16.324 -4.169 20.842
hybrid contribution 0.025 -0.292 0.487 0.569
sum -12.245 16.031 -3.682 20.506
Atomic orbital electron populations
1.21300 0.92304 1.01671 1.01546 1.21692 0.94584 0.91321 1.05665
1.21325 1.00033 0.94171 1.01562 1.23350 1.01970 1.00337 0.93862
1.21533 0.96788 0.98852 0.93764 1.21336 0.98506 0.97685 1.00074
1.21391 0.93597 0.91013 0.97013 1.60411 1.05730 1.29086 1.35448
1.21976 0.92238 0.95548 0.96698 1.22226 0.97504 0.89915 0.91644
1.87963 1.85040 1.25292 1.31619 1.20186 0.92663 0.80198 0.95099
1.21119 1.42434 0.97464 0.93690 0.91444 1.24953 0.95632 0.97973
0.96070 1.69979 1.45999 1.20287 1.17801 0.86295 0.77836 0.80410
0.82054 1.19444 1.20922 1.20895 0.92451 0.92504 0.92462 0.92397
0.92429 0.92479 0.88874 0.88989 0.92889 0.92478 0.90566 0.95627
0.91042 0.84021 0.90482 0.95015 0.94232 0.94861 0.98034 0.97909
0.92826
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.95 8.88 37.16 0.33 -0.62 16
2 C -0.13 -1.31 2.70 -154.51 -0.42 -1.73 16
3 C -0.11 -1.00 8.88 37.16 0.33 -0.67 16
4 C -0.16 -1.80 9.11 -26.74 -0.24 -2.05 16
5 C -0.11 -1.27 2.57 -154.51 -0.40 -1.67 16
6 C -0.12 -1.35 8.55 37.16 0.32 -1.03 16
7 C 0.10 1.25 4.89 -3.82 -0.02 1.23 16
8 N -0.67 -10.30 6.06 -113.78 -0.69 -10.99 16
9 C 0.06 1.00 6.07 -3.83 -0.02 0.97 16
10 C 0.07 1.24 6.22 37.16 0.23 1.47 16
11 O -0.38 -9.53 10.27 -35.23 -0.36 -9.89 16
12 C 0.19 5.46 5.69 36.00 0.20 5.67 16
13 C -0.51 -15.44 9.43 -34.44 -0.32 -15.76 16
14 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16
15 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16
16 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16
17 Si 0.91 22.34 29.54 -169.99 -5.02 17.32 16
18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
21 H 0.06 0.47 8.03 -51.93 -0.42 0.06 16
22 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16
23 H 0.06 0.49 7.77 -51.93 -0.40 0.08 16
24 H 0.06 0.52 7.77 -51.93 -0.40 0.11 16
25 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16
26 H 0.06 0.49 8.02 -51.93 -0.42 0.07 16
27 H 0.09 1.08 7.96 -51.93 -0.41 0.67 16
28 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16
29 H 0.05 0.53 8.03 -51.93 -0.42 0.11 16
30 H 0.06 0.62 7.77 -51.93 -0.40 0.22 16
31 H 0.08 0.98 5.84 -51.93 -0.30 0.67 16
32 H 0.03 0.30 8.02 -51.93 -0.42 -0.12 16
33 H 0.07 0.93 7.78 -51.93 -0.40 0.53 16
34 H 0.34 4.89 6.54 -39.29 -0.26 4.63 16
35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16
37 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16
38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
39 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16
40 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16
41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
LS Contribution 331.23 15.07 4.99 4.99
Total: -1.00 -31.94 331.23 -8.02 -39.97
By element:
Atomic # 1 Polarization: 5.60 SS G_CDS: -7.57 Total: -1.97 kcal
Atomic # 6 Polarization: -12.56 SS G_CDS: -0.11 Total: -12.67 kcal
Atomic # 7 Polarization: -37.80 SS G_CDS: 0.05 Total: -37.75 kcal
Atomic # 8 Polarization: -9.53 SS G_CDS: -0.36 Total: -9.89 kcal
Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -31.94 -8.02 -39.97 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000702425026.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.959 kcal
(2) G-P(sol) polarization free energy of solvation -31.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.983 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds