Wall clock time and date at job start Mon Mar 30 2020 03:19:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53004 * 115.56078 * 2 1
4 4 C 1.52993 * 117.49919 * 214.30839 * 2 1 3
5 5 C 1.52996 * 60.00123 * 252.51054 * 4 2 1
6 6 C 1.52997 * 117.49891 * 107.51121 * 5 4 2
7 7 C 1.52997 * 117.49882 * 252.51209 * 5 4 2
8 8 N 1.46904 * 109.46950 * 248.60979 * 7 5 4
9 9 C 1.46899 * 111.00029 * 180.02562 * 8 7 5
10 10 C 1.52997 * 109.47254 * 179.97438 * 9 8 7
11 11 O 1.42904 * 109.47396 * 64.99580 * 10 9 8
12 12 C 1.42896 * 114.00313 * 180.02562 * 11 10 9
13 13 C 1.50699 * 109.46851 * 180.02562 * 12 11 10
14 14 H 1.07999 * 120.00616 * 359.97438 * 13 12 11
15 15 C 1.37884 * 119.99887 * 180.02562 * 13 12 11
16 16 N 1.31513 * 119.99815 * 359.97438 * 15 13 12
17 17 Si 1.86800 * 120.00265 * 179.97438 * 15 13 12
18 18 H 1.48500 * 109.47002 * 359.97438 * 17 15 13
19 19 H 1.48497 * 109.47253 * 119.99229 * 17 15 13
20 20 H 1.48498 * 109.46902 * 239.99613 * 17 15 13
21 21 H 1.08997 * 109.46999 * 274.31647 * 1 2 3
22 22 H 1.09001 * 109.47148 * 34.31178 * 1 2 3
23 23 H 1.08995 * 109.47418 * 154.31087 * 1 2 3
24 24 H 1.09003 * 109.46599 * 205.69056 * 3 2 1
25 25 H 1.09003 * 109.46929 * 325.68486 * 3 2 1
26 26 H 1.08999 * 109.47167 * 85.68768 * 3 2 1
27 27 H 1.09004 * 117.49891 * 145.01944 * 4 2 1
28 28 H 1.09002 * 117.49995 * 0.02562 * 4 2 1
29 29 H 1.08996 * 109.47201 * 231.25437 * 6 5 4
30 30 H 1.09003 * 109.47326 * 351.25530 * 6 5 4
31 31 H 1.09007 * 109.47149 * 111.25111 * 6 5 4
32 32 H 1.08995 * 109.47319 * 128.60909 * 7 5 4
33 33 H 1.09003 * 109.47435 * 8.60233 * 7 5 4
34 34 H 1.00908 * 110.99583 * 303.94989 * 8 7 5
35 35 H 1.09002 * 109.47043 * 299.99792 * 9 8 7
36 36 H 1.09001 * 109.47354 * 59.99854 * 9 8 7
37 37 H 1.09001 * 109.47630 * 184.99901 * 10 9 8
38 38 H 1.09004 * 109.47346 * 305.00031 * 10 9 8
39 39 H 1.08999 * 109.46799 * 300.00326 * 12 11 10
40 40 H 1.08998 * 109.47187 * 59.99969 * 12 11 10
41 41 H 0.97003 * 120.00101 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1902 1.3803 0.0000
4 6 2.2365 -1.1210 -0.7649
5 6 2.2365 -1.1209 0.7650
6 6 1.3593 -2.1564 1.4715
7 6 3.5490 -0.7758 1.4715
8 7 4.0714 -1.9719 2.1457
9 6 5.3337 -1.6775 2.8369
10 6 5.8453 -2.9441 3.5259
11 8 6.1743 -3.9237 2.5389
12 6 6.6642 -5.1522 3.0798
13 6 6.9781 -6.1061 1.9561
14 1 6.8190 -5.8045 0.9313
15 6 7.4676 -7.3643 2.2363
16 7 7.6609 -7.7317 3.4841
17 14 7.8560 -8.5469 0.8435
18 1 7.5526 -7.8970 -0.4568
19 1 9.2946 -8.9122 0.8909
20 1 7.0292 -9.7718 0.9891
21 1 -0.3633 0.0773 1.0247
22 1 -0.3633 0.8488 -0.5793
23 1 -0.3634 -0.9260 -0.4454
24 1 3.1824 1.3084 -0.4455
25 1 1.5812 2.0743 -0.5794
26 1 2.2773 1.7414 1.0247
27 1 3.1716 -0.8751 -1.2682
28 1 1.6112 -1.8583 -1.2685
29 1 0.7314 -1.6577 2.2098
30 1 0.7285 -2.6592 0.7383
31 1 1.9929 -2.8902 1.9697
32 1 3.3701 0.0075 2.2080
33 1 4.2754 -0.4259 0.7379
34 1 3.3900 -2.3534 2.7847
35 1 6.0726 -1.3335 2.1131
36 1 5.1669 -0.9006 3.5830
37 1 6.7333 -2.7059 4.1115
38 1 5.0708 -3.3377 4.1843
39 1 7.5691 -4.9600 3.6563
40 1 5.9065 -5.5914 3.7286
41 1 8.0056 -8.6168 3.6813
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000702425026.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:19
Heat of formation + Delta-G solvation = -57.379297 kcal
Electronic energy + Delta-G solvation = -17371.728079 eV
Core-core repulsion = 14672.133100 eV
Total energy + Delta-G solvation = -2699.594979 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.33392 -38.71643 -36.44136 -34.84485 -31.87217 -30.29828 -29.18012 -28.67933
-27.64059 -25.57106 -24.45751 -22.84019 -21.28352 -18.78185 -18.49937 -17.59531
-16.88390 -16.78823 -16.22984 -15.82685 -15.73140 -15.06523 -14.83181 -14.51749
-14.18313 -13.99665 -13.63359 -13.34340 -13.23501 -13.01479 -12.95209 -12.79514
-12.77350 -12.58219 -12.55172 -12.26946 -12.21274 -11.82107 -11.61707 -11.24158
-10.86376 -10.53511 -10.24933 -10.17312 -9.20731 -8.31531 -6.43284 1.39857
1.41512 1.56600 2.35907 2.72534 3.02019 3.21368 3.29184 3.76226
3.83541 3.92141 4.17828 4.22556 4.24089 4.28860 4.51752 4.59669
4.60943 4.69963 4.81187 4.83531 4.85206 4.93991 4.97823 4.98899
5.04032 5.08190 5.09754 5.10900 5.19760 5.21238 5.32479 5.44180
5.56215 5.56561 5.98270 6.14255 6.47919 6.58877 6.87608 7.29076
8.81134
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.030706 B = 0.004108 C = 0.003847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 911.668575 B = 6815.120286 C = 7277.553417
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.114 4.114
3 C -0.115 4.115
4 C -0.174 4.174
5 C -0.124 4.124
6 C -0.115 4.115
7 C 0.105 3.895
8 N -0.697 5.697
9 C 0.074 3.926
10 C 0.055 3.945
11 O -0.397 6.397
12 C 0.208 3.792
13 C -0.546 4.546
14 H 0.058 0.942
15 C 0.006 3.994
16 N -0.931 5.931
17 Si 0.983 3.017
18 H -0.266 1.266
19 H -0.270 1.270
20 H -0.270 1.270
21 H 0.063 0.937
22 H 0.069 0.931
23 H 0.055 0.945
24 H 0.052 0.948
25 H 0.071 0.929
26 H 0.062 0.938
27 H 0.085 0.915
28 H 0.091 0.909
29 H 0.067 0.933
30 H 0.057 0.943
31 H 0.057 0.943
32 H 0.041 0.959
33 H 0.064 0.936
34 H 0.343 0.657
35 H 0.070 0.930
36 H 0.068 0.932
37 H 0.049 0.951
38 H 0.039 0.961
39 H -0.016 1.016
40 H -0.016 1.016
41 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.341 17.389 -4.165 22.309
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.114 4.114
3 C -0.172 4.172
4 C -0.211 4.211
5 C -0.124 4.124
6 C -0.172 4.172
7 C -0.024 4.024
8 N -0.331 5.331
9 C -0.055 4.055
10 C -0.022 4.022
11 O -0.317 6.317
12 C 0.133 3.867
13 C -0.583 4.583
14 H 0.077 0.923
15 C -0.192 4.192
16 N -0.571 5.571
17 Si 0.806 3.194
18 H -0.190 1.190
19 H -0.195 1.195
20 H -0.195 1.195
21 H 0.082 0.918
22 H 0.088 0.912
23 H 0.074 0.926
24 H 0.071 0.929
25 H 0.090 0.910
26 H 0.081 0.919
27 H 0.104 0.896
28 H 0.109 0.891
29 H 0.086 0.914
30 H 0.076 0.924
31 H 0.075 0.925
32 H 0.059 0.941
33 H 0.082 0.918
34 H 0.164 0.836
35 H 0.088 0.912
36 H 0.086 0.914
37 H 0.067 0.933
38 H 0.058 0.942
39 H 0.002 0.998
40 H 0.002 0.998
41 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -12.989 17.045 -4.803 21.962
hybrid contribution 0.219 -0.445 0.744 0.894
sum -12.770 16.601 -4.059 21.334
Atomic orbital electron populations
1.21335 0.91086 1.02233 1.02200 1.21798 0.95408 0.91178 1.03053
1.21362 0.99991 0.93684 1.02157 1.23389 1.02166 1.01683 0.93828
1.21575 0.96857 1.00290 0.93677 1.21288 0.98305 0.97348 1.00290
1.21357 0.93771 0.90326 0.96960 1.60375 1.05915 1.30878 1.35919
1.21875 0.92215 0.94143 0.97237 1.22600 0.98250 0.89985 0.91410
1.87917 1.84978 1.25087 1.33704 1.19804 0.91269 0.81471 0.94163
1.21414 1.44223 0.98988 0.93712 0.92346 1.25959 0.94595 0.99547
0.99120 1.70075 1.45820 1.21204 1.19973 0.85136 0.78281 0.77737
0.78246 1.19031 1.19491 1.19541 0.91837 0.91157 0.92635 0.92861
0.91004 0.91920 0.89625 0.89102 0.91436 0.92359 0.92453 0.94066
0.91782 0.83634 0.91182 0.91423 0.93332 0.94248 0.99819 0.99846
0.92050
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.66 8.88 71.98 0.64 -1.02 16
2 C -0.11 -2.06 2.70 -52.18 -0.14 -2.20 16
3 C -0.11 -1.78 8.88 71.98 0.64 -1.14 16
4 C -0.17 -3.87 9.11 30.59 0.28 -3.59 16
5 C -0.12 -2.76 2.57 -52.19 -0.13 -2.89 16
6 C -0.12 -2.52 8.55 71.98 0.62 -1.91 16
7 C 0.10 2.52 4.89 86.30 0.42 2.95 16
8 N -0.70 -20.93 6.06 -513.89 -3.12 -24.05 16
9 C 0.07 2.22 6.07 86.30 0.52 2.75 16
10 C 0.05 2.09 6.22 71.98 0.45 2.54 16
11 O -0.40 -20.39 10.27 -148.98 -1.53 -21.92 16
12 C 0.21 12.16 5.69 71.24 0.41 12.57 16
13 C -0.55 -33.79 9.43 25.60 0.24 -33.54 16
14 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16
15 C 0.01 0.36 5.46 84.66 0.46 0.82 16
16 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16
17 Si 0.98 45.60 29.54 68.60 2.03 47.63 16
18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16
19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16
20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16
21 H 0.06 0.89 8.03 -2.39 -0.02 0.87 16
22 H 0.07 0.87 7.92 -2.39 -0.02 0.85 16
23 H 0.05 0.85 7.77 -2.39 -0.02 0.83 16
24 H 0.05 0.87 7.77 -2.39 -0.02 0.86 16
25 H 0.07 0.91 7.92 -2.39 -0.02 0.89 16
26 H 0.06 0.91 8.02 -2.39 -0.02 0.89 16
27 H 0.09 2.00 7.96 -2.38 -0.02 1.98 16
28 H 0.09 2.00 7.96 -2.39 -0.02 1.98 16
29 H 0.07 1.24 8.03 -2.39 -0.02 1.22 16
30 H 0.06 1.23 7.77 -2.39 -0.02 1.21 16
31 H 0.06 1.47 5.84 -2.38 -0.01 1.46 16
32 H 0.04 0.87 8.02 -2.39 -0.02 0.85 16
33 H 0.06 1.63 7.78 -2.39 -0.02 1.61 16
34 H 0.34 9.75 6.54 -89.69 -0.59 9.16 16
35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16
36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16
38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16
40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16
41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16
Total: -1.00 -68.42 331.23 2.45 -65.97
By element:
Atomic # 1 Polarization: 13.50 SS G_CDS: 0.38 Total: 13.89 kcal
Atomic # 6 Polarization: -29.08 SS G_CDS: 4.40 Total: -24.68 kcal
Atomic # 7 Polarization: -78.05 SS G_CDS: -2.83 Total: -80.88 kcal
Atomic # 8 Polarization: -20.39 SS G_CDS: -1.53 Total: -21.92 kcal
Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal
Total: -68.42 2.45 -65.97 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000702425026.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.590 kcal
(2) G-P(sol) polarization free energy of solvation -68.419 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.970 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.379 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds