Wall clock time and date at job start Mon Mar 30 2020 03:29:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.46882 * 2 1
4 4 C 1.53003 * 109.46803 * 179.97438 * 3 2 1
5 5 O 1.42895 * 109.54124 * 300.10024 * 4 3 2
6 6 C 1.53125 * 109.50097 * 60.20251 * 4 3 2
7 7 C 1.53118 * 109.15940 * 177.59518 * 6 4 3
8 8 C 1.53046 * 109.27388 * 302.33924 * 7 6 4
9 9 N 1.46842 * 109.52166 * 59.18565 * 8 7 6
10 10 C 1.46897 * 110.99931 * 174.15750 * 9 8 7
11 11 H 1.09009 * 109.47315 * 179.20762 * 10 9 8
12 12 C 1.53003 * 109.47431 * 59.21014 * 10 9 8
13 13 C 1.50697 * 109.47503 * 299.20709 * 10 9 8
14 14 H 1.08005 * 119.99858 * 5.34272 * 13 10 9
15 15 C 1.37875 * 120.00592 * 185.34426 * 13 10 9
16 16 N 1.31514 * 120.00073 * 185.20277 * 15 13 10
17 17 Si 1.86797 * 119.99725 * 5.19513 * 15 13 10
18 18 H 1.48502 * 109.47730 * 270.00211 * 17 15 13
19 19 H 1.48502 * 109.47110 * 149.99915 * 17 15 13
20 20 H 1.48498 * 109.47214 * 30.00650 * 17 15 13
21 21 C 1.46852 * 111.20025 * 298.25267 * 9 8 7
22 22 H 1.08998 * 109.47204 * 299.99511 * 1 2 3
23 23 H 1.09001 * 109.47424 * 59.99962 * 1 2 3
24 24 H 1.09004 * 109.46966 * 179.97438 * 1 2 3
25 25 H 1.08998 * 109.47204 * 240.00489 * 2 1 3
26 26 H 1.08999 * 109.47002 * 119.99717 * 2 1 3
27 27 H 1.08998 * 109.46801 * 60.00243 * 3 2 1
28 28 H 1.08991 * 109.47250 * 300.00296 * 3 2 1
29 29 H 0.96706 * 113.99632 * 59.89875 * 5 4 3
30 30 H 1.09005 * 109.51701 * 297.49516 * 6 4 3
31 31 H 1.09002 * 109.52225 * 57.68292 * 6 4 3
32 32 H 1.08995 * 109.50743 * 62.27959 * 7 6 4
33 33 H 1.08997 * 109.50178 * 182.36506 * 7 6 4
34 34 H 1.08992 * 109.46225 * 299.16387 * 8 7 6
35 35 H 1.08997 * 109.45891 * 179.19646 * 8 7 6
36 36 H 1.09007 * 109.46344 * 294.97036 * 12 10 9
37 37 H 1.09004 * 109.46956 * 54.96248 * 12 10 9
38 38 H 1.09000 * 109.47739 * 174.96697 * 12 10 9
39 39 H 0.96999 * 120.00122 * 354.98817 * 16 15 13
40 40 H 1.08999 * 109.46527 * 181.76153 * 21 9 8
41 41 H 1.09006 * 109.45834 * 301.73293 * 21 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5700 1.4425 0.0006
5 8 4.0474 0.7673 1.1660
6 6 4.0817 0.7251 -1.2516
7 6 5.6116 0.7820 -1.2736
8 6 6.0633 2.2438 -1.2367
9 7 5.5492 2.8857 -0.0201
10 6 6.0771 4.2495 0.1188
11 1 5.6695 4.7068 1.0205
12 6 5.6731 5.0796 -1.1013
13 6 7.5800 4.1989 0.2167
14 1 8.0979 3.2592 0.0931
15 6 8.2941 5.3522 0.4641
16 7 9.6089 5.3277 0.4480
17 14 7.3939 6.9493 0.8218
18 1 7.1443 7.6728 -0.4509
19 1 8.2232 7.7951 1.7175
20 1 6.0985 6.6500 1.4833
21 6 4.0808 2.8852 0.0007
22 1 -0.3633 0.5137 0.8900
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8933 -0.5137 -0.8900
26 1 1.8933 -0.5138 0.8900
27 1 1.6766 1.9563 0.8900
28 1 1.6766 1.9564 -0.8899
29 1 3.7614 -0.1541 1.2316
30 1 3.7561 -0.3151 -1.2340
31 1 3.6859 1.2166 -2.1404
32 1 6.0079 0.2567 -0.4047
33 1 5.9803 0.3095 -2.1840
34 1 5.6782 2.7652 -2.1129
35 1 7.1524 2.2875 -1.2378
36 1 6.1537 4.6741 -1.9918
37 1 4.5906 5.0424 -1.2238
38 1 5.9872 6.1134 -0.9577
39 1 10.0770 4.4857 0.3346
40 1 3.7301 3.3947 0.8981
41 1 3.7050 3.4036 -0.8815
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000710206722.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:36
Heat of formation + Delta-G solvation = -63.076860 kcal
Electronic energy + Delta-G solvation = -18811.198560 eV
Core-core repulsion = 16111.356516 eV
Total energy + Delta-G solvation = -2699.842044 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.60343 -36.69066 -33.99236 -33.41365 -31.87131 -30.28014 -28.88335 -26.19763
-24.91845 -23.79888 -22.05196 -21.22839 -19.70211 -18.87290 -17.19478 -16.22361
-15.65019 -15.24805 -14.57504 -14.35564 -14.21357 -13.49957 -13.36845 -13.08086
-12.90493 -12.63750 -12.17780 -11.89079 -11.80850 -11.66817 -11.51429 -11.35244
-11.25427 -11.02973 -10.79234 -10.53221 -10.44148 -10.28403 -9.98961 -9.66718
-9.50023 -9.39578 -8.63557 -8.31523 -7.17256 -6.35304 -3.97846 3.39570
3.47695 3.62211 4.44315 4.53381 4.57629 4.83538 4.85066 5.01263
5.12682 5.21004 5.34080 5.38994 5.49436 5.57136 5.68416 5.70438
5.85088 5.91923 5.96397 5.98701 6.08978 6.15020 6.16766 6.18302
6.23871 6.30246 6.40951 6.48572 6.63275 6.73932 6.80339 6.97099
7.32140 7.80862 8.01743 8.16719 8.39383 8.53758 9.04398 9.70813
11.05439
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.038504 B = 0.006300 C = 0.005883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 727.030036 B = 4443.698321 C = 4758.096824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.129 4.129
3 C -0.146 4.146
4 C 0.139 3.861
5 O -0.534 6.534
6 C -0.143 4.143
7 C -0.114 4.114
8 C 0.063 3.937
9 N -0.508 5.508
10 C 0.179 3.821
11 H 0.038 0.962
12 C -0.184 4.184
13 C -0.574 4.574
14 H 0.064 0.936
15 C 0.025 3.975
16 N -0.918 5.918
17 Si 1.056 2.944
18 H -0.287 1.287
19 H -0.290 1.290
20 H -0.281 1.281
21 C 0.066 3.934
22 H 0.054 0.946
23 H 0.052 0.948
24 H 0.052 0.948
25 H 0.064 0.936
26 H 0.062 0.938
27 H 0.070 0.930
28 H 0.067 0.933
29 H 0.358 0.642
30 H 0.060 0.940
31 H 0.062 0.938
32 H 0.072 0.928
33 H 0.055 0.945
34 H 0.019 0.981
35 H 0.085 0.915
36 H 0.051 0.949
37 H 0.025 0.975
38 H 0.046 0.954
39 H 0.266 0.734
40 H 0.071 0.929
41 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.375 -9.457 -3.314 19.198
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.166 4.166
3 C -0.184 4.184
4 C 0.098 3.902
5 O -0.338 6.338
6 C -0.181 4.181
7 C -0.152 4.152
8 C -0.065 4.065
9 N -0.231 5.231
10 C 0.072 3.928
11 H 0.056 0.944
12 C -0.243 4.243
13 C -0.612 4.612
14 H 0.082 0.918
15 C -0.179 4.179
16 N -0.553 5.553
17 Si 0.886 3.114
18 H -0.214 1.214
19 H -0.217 1.217
20 H -0.207 1.207
21 C -0.063 4.063
22 H 0.073 0.927
23 H 0.071 0.929
24 H 0.071 0.929
25 H 0.083 0.917
26 H 0.081 0.919
27 H 0.088 0.912
28 H 0.086 0.914
29 H 0.204 0.796
30 H 0.079 0.921
31 H 0.080 0.920
32 H 0.091 0.909
33 H 0.073 0.927
34 H 0.037 0.963
35 H 0.103 0.897
36 H 0.070 0.930
37 H 0.044 0.956
38 H 0.065 0.935
39 H 0.076 0.924
40 H 0.089 0.911
41 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -15.685 -7.518 -2.505 17.574
hybrid contribution -0.850 -1.642 -1.246 2.229
sum -16.535 -9.160 -3.751 19.271
Atomic orbital electron populations
1.21750 0.95834 1.01383 1.01805 1.21583 0.96006 0.97035 1.01971
1.22287 0.96247 0.97142 1.02754 1.21239 0.90522 0.93286 0.85155
1.86784 1.76627 1.27241 1.43179 1.22286 0.97581 1.00025 0.98191
1.21563 0.94289 0.98053 1.01330 1.21972 1.01506 0.92369 0.90678
1.62043 1.03958 1.20667 1.36464 1.19838 0.96932 0.83499 0.92581
0.94391 1.22791 0.97631 1.01347 1.02530 1.22050 0.89673 0.96941
1.52541 0.91770 1.25677 0.96125 1.02316 0.93774 1.70807 1.07371
1.29379 1.47753 0.83847 0.75129 0.75689 0.76685 1.21402 1.21726
1.20675 1.22015 0.91160 0.92791 1.00315 0.92727 0.92851 0.92919
0.91728 0.91895 0.91172 0.91400 0.79588 0.92136 0.91973 0.90916
0.92678 0.96269 0.89691 0.92983 0.95572 0.93510 0.92364 0.91096
0.94578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16
2 C -0.13 -1.19 5.28 -26.73 -0.14 -1.33 16
3 C -0.15 -1.68 4.49 -26.73 -0.12 -1.80 16
4 C 0.14 2.03 0.75 -90.53 -0.07 1.96 16
5 O -0.53 -8.46 12.27 -35.23 -0.43 -8.89 16
6 C -0.14 -1.94 4.56 -26.61 -0.12 -2.06 16
7 C -0.11 -1.85 5.94 -26.65 -0.16 -2.01 16
8 C 0.06 1.26 4.67 -3.83 -0.02 1.24 16
9 N -0.51 -11.10 4.52 -228.07 -1.03 -12.13 16
10 C 0.18 4.41 1.92 -68.87 -0.13 4.28 16
11 H 0.04 0.98 6.59 -51.92 -0.34 0.64 16
12 C -0.18 -4.09 8.05 37.16 0.30 -3.79 16
13 C -0.57 -16.37 8.34 -34.44 -0.29 -16.66 16
14 H 0.06 1.98 6.78 -52.48 -0.36 1.63 16
15 C 0.02 0.73 5.43 -17.82 -0.10 0.63 16
16 N -0.92 -28.71 13.70 55.43 0.76 -27.95 16
17 Si 1.06 26.14 25.29 -169.99 -4.30 21.85 16
18 H -0.29 -6.75 6.81 56.52 0.38 -6.36 16
19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
20 H -0.28 -6.53 6.36 56.52 0.36 -6.17 16
21 C 0.07 1.20 4.00 -3.83 -0.02 1.18 16
22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
25 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16
26 H 0.06 0.55 6.78 -51.93 -0.35 0.20 16
27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
29 H 0.36 4.17 7.34 45.56 0.33 4.51 16
30 H 0.06 0.69 6.58 -51.93 -0.34 0.35 16
31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
32 H 0.07 1.26 7.80 -51.93 -0.40 0.86 16
33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16
34 H 0.02 0.38 6.74 -51.93 -0.35 0.03 16
35 H 0.08 1.94 6.25 -51.93 -0.32 1.62 16
36 H 0.05 1.16 6.81 -51.93 -0.35 0.80 16
37 H 0.03 0.50 6.42 -51.93 -0.33 0.17 16
38 H 0.05 1.06 4.40 -51.93 -0.23 0.83 16
39 H 0.27 8.31 8.72 -40.82 -0.36 7.96 16
40 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16
41 H 0.04 0.63 6.62 -51.93 -0.34 0.28 16
LS Contribution 298.76 15.07 4.50 4.50
Total: -1.00 -31.36 298.76 -7.31 -38.68
By element:
Atomic # 1 Polarization: 9.48 SS G_CDS: -6.32 Total: 3.16 kcal
Atomic # 6 Polarization: -18.72 SS G_CDS: -0.49 Total: -19.21 kcal
Atomic # 7 Polarization: -39.81 SS G_CDS: -0.27 Total: -40.08 kcal
Atomic # 8 Polarization: -8.46 SS G_CDS: -0.43 Total: -8.89 kcal
Atomic # 14 Polarization: 26.14 SS G_CDS: -4.30 Total: 21.85 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -31.36 -7.31 -38.68 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710206722.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.401 kcal
(2) G-P(sol) polarization free energy of solvation -31.363 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.764 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.077 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds