Wall clock time and date at job start Mon Mar 30 2020 03:29:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.46882 * 2 1
4 4 C 1.53003 * 109.46803 * 179.97438 * 3 2 1
5 5 O 1.42895 * 109.54124 * 300.10024 * 4 3 2
6 6 C 1.53125 * 109.50097 * 60.20251 * 4 3 2
7 7 C 1.53118 * 109.15940 * 177.59518 * 6 4 3
8 8 C 1.53046 * 109.27388 * 302.33924 * 7 6 4
9 9 N 1.46842 * 109.52166 * 59.18565 * 8 7 6
10 10 C 1.46897 * 110.99931 * 174.15750 * 9 8 7
11 11 H 1.09009 * 109.47315 * 179.20762 * 10 9 8
12 12 C 1.53003 * 109.47431 * 59.21014 * 10 9 8
13 13 C 1.50697 * 109.47503 * 299.20709 * 10 9 8
14 14 H 1.08005 * 119.99858 * 5.34272 * 13 10 9
15 15 C 1.37875 * 120.00592 * 185.34426 * 13 10 9
16 16 N 1.31514 * 120.00073 * 185.20277 * 15 13 10
17 17 Si 1.86797 * 119.99725 * 5.19513 * 15 13 10
18 18 H 1.48502 * 109.47730 * 270.00211 * 17 15 13
19 19 H 1.48502 * 109.47110 * 149.99915 * 17 15 13
20 20 H 1.48498 * 109.47214 * 30.00650 * 17 15 13
21 21 C 1.46852 * 111.20025 * 298.25267 * 9 8 7
22 22 H 1.08998 * 109.47204 * 299.99511 * 1 2 3
23 23 H 1.09001 * 109.47424 * 59.99962 * 1 2 3
24 24 H 1.09004 * 109.46966 * 179.97438 * 1 2 3
25 25 H 1.08998 * 109.47204 * 240.00489 * 2 1 3
26 26 H 1.08999 * 109.47002 * 119.99717 * 2 1 3
27 27 H 1.08998 * 109.46801 * 60.00243 * 3 2 1
28 28 H 1.08991 * 109.47250 * 300.00296 * 3 2 1
29 29 H 0.96706 * 113.99632 * 59.89875 * 5 4 3
30 30 H 1.09005 * 109.51701 * 297.49516 * 6 4 3
31 31 H 1.09002 * 109.52225 * 57.68292 * 6 4 3
32 32 H 1.08995 * 109.50743 * 62.27959 * 7 6 4
33 33 H 1.08997 * 109.50178 * 182.36506 * 7 6 4
34 34 H 1.08992 * 109.46225 * 299.16387 * 8 7 6
35 35 H 1.08997 * 109.45891 * 179.19646 * 8 7 6
36 36 H 1.09007 * 109.46344 * 294.97036 * 12 10 9
37 37 H 1.09004 * 109.46956 * 54.96248 * 12 10 9
38 38 H 1.09000 * 109.47739 * 174.96697 * 12 10 9
39 39 H 0.96999 * 120.00122 * 354.98817 * 16 15 13
40 40 H 1.08999 * 109.46527 * 181.76153 * 21 9 8
41 41 H 1.09006 * 109.45834 * 301.73293 * 21 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5700 1.4425 0.0006
5 8 4.0474 0.7673 1.1660
6 6 4.0817 0.7251 -1.2516
7 6 5.6116 0.7820 -1.2736
8 6 6.0633 2.2438 -1.2367
9 7 5.5492 2.8857 -0.0201
10 6 6.0771 4.2495 0.1188
11 1 5.6695 4.7068 1.0205
12 6 5.6731 5.0796 -1.1013
13 6 7.5800 4.1989 0.2167
14 1 8.0979 3.2592 0.0931
15 6 8.2941 5.3522 0.4641
16 7 9.6089 5.3277 0.4480
17 14 7.3939 6.9493 0.8218
18 1 7.1443 7.6728 -0.4509
19 1 8.2232 7.7951 1.7175
20 1 6.0985 6.6500 1.4833
21 6 4.0808 2.8852 0.0007
22 1 -0.3633 0.5137 0.8900
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8933 -0.5137 -0.8900
26 1 1.8933 -0.5138 0.8900
27 1 1.6766 1.9563 0.8900
28 1 1.6766 1.9564 -0.8899
29 1 3.7614 -0.1541 1.2316
30 1 3.7561 -0.3151 -1.2340
31 1 3.6859 1.2166 -2.1404
32 1 6.0079 0.2567 -0.4047
33 1 5.9803 0.3095 -2.1840
34 1 5.6782 2.7652 -2.1129
35 1 7.1524 2.2875 -1.2378
36 1 6.1537 4.6741 -1.9918
37 1 4.5906 5.0424 -1.2238
38 1 5.9872 6.1134 -0.9577
39 1 10.0770 4.4857 0.3346
40 1 3.7301 3.3947 0.8981
41 1 3.7050 3.4036 -0.8815
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000710206722.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:36
Heat of formation + Delta-G solvation = -86.794953 kcal
Electronic energy + Delta-G solvation = -18812.227054 eV
Core-core repulsion = 16111.356516 eV
Total energy + Delta-G solvation = -2700.870537 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.91264 -38.18087 -35.20060 -34.85689 -33.71114 -31.54161 -30.50607 -27.33165
-26.79650 -25.32421 -23.28887 -22.46992 -21.04293 -20.48167 -19.31375 -17.38144
-17.13850 -16.21148 -16.00854 -15.95140 -15.44673 -15.16222 -14.91911 -14.54180
-13.97909 -13.93366 -13.69330 -13.36447 -13.23164 -13.14287 -12.96320 -12.67730
-12.44436 -12.31970 -12.05197 -11.86925 -11.76977 -11.69168 -11.57058 -11.45497
-10.91050 -10.82703 -10.59145 -10.45069 -8.86905 -8.69523 -6.33953 1.39906
1.51767 1.68082 2.47005 3.09095 3.18810 3.40875 3.82618 3.84904
3.96492 4.14235 4.19497 4.29496 4.39969 4.51962 4.54379 4.59485
4.61910 4.66551 4.72680 4.79271 4.82115 4.90920 4.94669 4.98052
5.03067 5.10036 5.15178 5.24412 5.32475 5.40014 5.43096 5.49349
5.51059 5.82245 6.05722 6.33402 6.64032 6.74910 7.06385 7.44742
8.68538
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.038504 B = 0.006300 C = 0.005883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 727.030036 B = 4443.698321 C = 4758.096824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.125 4.125
3 C -0.137 4.137
4 C 0.141 3.859
5 O -0.561 6.561
6 C -0.135 4.135
7 C -0.108 4.108
8 C 0.066 3.934
9 N -0.530 5.530
10 C 0.179 3.821
11 H 0.029 0.971
12 C -0.175 4.175
13 C -0.572 4.572
14 H 0.022 0.978
15 C -0.029 4.029
16 N -0.949 5.949
17 Si 1.094 2.906
18 H -0.262 1.262
19 H -0.292 1.292
20 H -0.256 1.256
21 C 0.061 3.939
22 H 0.050 0.950
23 H 0.056 0.944
24 H 0.062 0.938
25 H 0.073 0.927
26 H 0.066 0.934
27 H 0.062 0.938
28 H 0.077 0.923
29 H 0.377 0.623
30 H 0.092 0.908
31 H 0.074 0.926
32 H 0.055 0.945
33 H 0.075 0.925
34 H 0.026 0.974
35 H 0.040 0.960
36 H 0.044 0.956
37 H 0.059 0.941
38 H 0.044 0.956
39 H 0.249 0.751
40 H 0.060 0.940
41 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.718 -9.878 -4.165 22.443
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.162 4.162
3 C -0.175 4.175
4 C 0.100 3.900
5 O -0.368 6.368
6 C -0.173 4.173
7 C -0.146 4.146
8 C -0.062 4.062
9 N -0.254 5.254
10 C 0.070 3.930
11 H 0.047 0.953
12 C -0.234 4.234
13 C -0.610 4.610
14 H 0.040 0.960
15 C -0.225 4.225
16 N -0.587 5.587
17 Si 0.917 3.083
18 H -0.188 1.188
19 H -0.219 1.219
20 H -0.181 1.181
21 C -0.067 4.067
22 H 0.070 0.930
23 H 0.075 0.925
24 H 0.081 0.919
25 H 0.092 0.908
26 H 0.085 0.915
27 H 0.081 0.919
28 H 0.095 0.905
29 H 0.225 0.775
30 H 0.110 0.890
31 H 0.093 0.907
32 H 0.073 0.927
33 H 0.094 0.906
34 H 0.044 0.956
35 H 0.059 0.941
36 H 0.063 0.937
37 H 0.078 0.922
38 H 0.063 0.937
39 H 0.058 0.942
40 H 0.078 0.922
41 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -19.056 -7.984 -3.370 20.934
hybrid contribution 0.229 -1.628 -0.959 1.903
sum -18.827 -9.612 -4.329 21.577
Atomic orbital electron populations
1.21740 0.94990 1.02127 1.01842 1.21570 0.96690 0.95351 1.02620
1.22189 0.93499 0.98929 1.02888 1.21221 0.92436 0.91044 0.85293
1.86730 1.77368 1.28874 1.43867 1.22259 0.94941 1.02037 0.98056
1.21503 0.96727 0.94806 1.01595 1.21904 0.98884 0.95171 0.90261
1.61920 1.06703 1.19029 1.37700 1.19648 0.94053 0.85895 0.93372
0.95341 1.22610 0.99734 1.00384 1.00704 1.22233 0.92376 0.95164
1.51227 0.95966 1.27141 0.96005 1.06162 0.93165 1.70939 1.08692
1.28421 1.50640 0.83395 0.75009 0.72072 0.77824 1.18812 1.21874
1.18091 1.22162 0.88412 0.95829 1.00317 0.93035 0.92533 0.91863
0.90807 0.91516 0.91886 0.90476 0.77495 0.88995 0.90696 0.92653
0.90607 0.95641 0.94124 0.93694 0.92223 0.93696 0.94182 0.92163
0.93283
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.92 9.91 71.98 0.71 -1.20 16
2 C -0.12 -1.82 5.28 30.60 0.16 -1.66 16
3 C -0.14 -2.68 4.49 30.60 0.14 -2.55 16
4 C 0.14 3.74 0.75 -10.74 -0.01 3.73 16
5 O -0.56 -16.78 12.27 -148.98 -1.83 -18.60 16
6 C -0.14 -3.20 4.56 30.68 0.14 -3.06 16
7 C -0.11 -3.35 5.94 30.65 0.18 -3.17 16
8 C 0.07 2.66 4.67 86.33 0.40 3.06 16
9 N -0.53 -23.12 4.52 -875.49 -3.95 -27.07 16
10 C 0.18 8.80 1.92 44.17 0.08 8.88 16
11 H 0.03 1.46 6.59 -2.38 -0.02 1.44 16
12 C -0.18 -7.51 8.05 71.98 0.58 -6.94 16
13 C -0.57 -33.88 8.34 25.60 0.21 -33.66 16
14 H 0.02 1.46 6.78 -2.91 -0.02 1.44 16
15 C -0.03 -1.72 5.43 84.65 0.46 -1.26 16
16 N -0.95 -61.72 13.70 21.45 0.29 -61.43 16
17 Si 1.09 52.30 25.29 68.60 1.73 54.04 16
18 H -0.26 -11.50 6.81 99.48 0.68 -10.82 16
19 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16
20 H -0.26 -11.16 6.36 99.48 0.63 -10.53 16
21 C 0.06 2.10 4.00 86.33 0.35 2.45 16
22 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
24 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16
25 H 0.07 0.96 6.49 -2.39 -0.02 0.95 16
26 H 0.07 0.93 6.78 -2.39 -0.02 0.92 16
27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
29 H 0.38 7.85 7.34 -74.05 -0.54 7.31 16
30 H 0.09 1.65 6.58 -2.38 -0.02 1.64 16
31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16
32 H 0.05 1.90 7.80 -2.39 -0.02 1.88 16
33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
34 H 0.03 0.98 6.74 -2.39 -0.02 0.96 16
35 H 0.04 1.96 6.25 -2.39 -0.01 1.94 16
36 H 0.04 1.95 6.81 -2.38 -0.02 1.94 16
37 H 0.06 2.14 6.42 -2.39 -0.02 2.12 16
38 H 0.04 1.92 4.40 -2.39 -0.01 1.91 16
39 H 0.25 16.51 8.72 -92.71 -0.81 15.71 16
40 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16
41 H 0.05 1.55 6.62 -2.38 -0.02 1.54 16
Total: -1.00 -70.85 298.76 -0.02 -70.88
By element:
Atomic # 1 Polarization: 17.24 SS G_CDS: 0.32 Total: 17.56 kcal
Atomic # 6 Polarization: -38.78 SS G_CDS: 3.41 Total: -35.37 kcal
Atomic # 7 Polarization: -84.84 SS G_CDS: -3.66 Total: -88.50 kcal
Atomic # 8 Polarization: -16.78 SS G_CDS: -1.83 Total: -18.60 kcal
Atomic # 14 Polarization: 52.30 SS G_CDS: 1.73 Total: 54.04 kcal
Total: -70.85 -0.02 -70.88 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710206722.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.919 kcal
(2) G-P(sol) polarization free energy of solvation -70.853 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.772 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.875 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds