Wall clock time and date at job start Mon Mar 30 2020 03:29:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.53001 * 109.46779 * 2 1
4 4 C 1.52998 * 109.47274 * 180.02562 * 3 2 1
5 5 O 1.42901 * 109.50480 * 64.91871 * 4 3 2
6 6 C 1.53123 * 109.53281 * 304.82386 * 4 3 2
7 7 C 1.53123 * 109.16001 * 182.38522 * 6 4 3
8 8 C 1.53036 * 109.27788 * 57.65365 * 7 6 4
9 9 N 1.46842 * 109.52190 * 300.81892 * 8 7 6
10 10 C 1.46907 * 110.99676 * 185.84074 * 9 8 7
11 11 C 1.52993 * 109.47159 * 293.95275 * 10 9 8
12 12 C 1.50703 * 109.47396 * 180.02562 * 11 10 9
13 13 H 1.08006 * 119.99196 * 359.97438 * 12 11 10
14 14 C 1.37866 * 120.00345 * 180.02562 * 12 11 10
15 15 N 1.31512 * 120.00291 * 359.97438 * 14 12 11
16 16 Si 1.86805 * 120.00211 * 179.97438 * 14 12 11
17 17 H 1.48503 * 109.47002 * 90.00017 * 16 14 12
18 18 H 1.48494 * 109.47300 * 210.00137 * 16 14 12
19 19 H 1.48503 * 109.46852 * 329.99922 * 16 14 12
20 20 C 1.46848 * 111.20069 * 61.74451 * 9 8 7
21 21 H 1.09004 * 109.46731 * 179.97438 * 1 2 3
22 22 H 1.08993 * 109.46875 * 299.99726 * 1 2 3
23 23 H 1.08998 * 109.47219 * 60.00323 * 1 2 3
24 24 H 1.09006 * 109.47176 * 240.00438 * 2 1 3
25 25 H 1.08990 * 109.47380 * 119.99923 * 2 1 3
26 26 H 1.08998 * 109.47091 * 59.99989 * 3 2 1
27 27 H 1.09001 * 109.47483 * 299.99853 * 3 2 1
28 28 H 0.96697 * 113.99866 * 300.08186 * 5 4 3
29 29 H 1.09000 * 109.52311 * 62.47715 * 6 4 3
30 30 H 1.09007 * 109.52076 * 302.28828 * 6 4 3
31 31 H 1.09000 * 109.50367 * 297.70910 * 7 6 4
32 32 H 1.09006 * 109.50264 * 177.59249 * 7 6 4
33 33 H 1.09002 * 109.46126 * 60.83950 * 8 7 6
34 34 H 1.09000 * 109.45809 * 180.80452 * 8 7 6
35 35 H 1.08999 * 109.47091 * 53.95650 * 10 9 8
36 36 H 1.09004 * 109.46632 * 173.95624 * 10 9 8
37 37 H 1.08999 * 109.47425 * 300.00171 * 11 10 9
38 38 H 1.09000 * 109.47418 * 60.00268 * 11 10 9
39 39 H 0.96998 * 120.00645 * 179.97438 * 15 14 12
40 40 H 1.09003 * 109.46014 * 58.27448 * 20 9 8
41 41 H 1.08991 * 109.46260 * 178.24823 * 20 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5699 1.4427 -0.0006
5 8 4.0466 0.8719 -1.2209
6 6 4.0825 0.6184 1.1837
7 6 5.6125 0.6734 1.2096
8 6 6.0642 2.1328 1.3003
9 7 5.5492 2.8785 0.1448
10 6 6.0771 4.2493 0.1253
11 6 5.5339 5.0222 1.3288
12 6 6.0748 6.4286 1.3085
13 1 6.7400 6.7399 0.5165
14 6 5.7215 7.3175 2.3013
15 7 4.9120 6.9384 3.2659
16 14 6.3927 9.0607 2.2765
17 1 5.4702 9.9354 1.5088
18 1 6.5104 9.5657 3.6680
19 1 7.7310 9.0667 1.6329
20 6 4.0809 2.8797 0.1251
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 1.8934 -0.5138 -0.8901
25 1 1.8934 -0.5138 0.8899
26 1 1.6766 1.9563 0.8900
27 1 1.6766 1.9564 -0.8900
28 1 3.7606 -0.0402 -1.3666
29 1 3.7569 -0.4162 1.0755
30 1 3.6874 1.0304 2.1123
31 1 6.0082 0.2259 0.2978
32 1 5.9818 0.1237 2.0754
33 1 5.6796 2.5756 2.2191
34 1 7.1533 2.1762 1.3045
35 1 7.1656 4.2202 0.1734
36 1 5.7671 4.7449 -0.7947
37 1 4.4453 5.0513 1.2807
38 1 5.8437 4.5266 2.2489
39 1 4.6637 7.5636 3.9647
40 1 3.7056 3.3191 1.0494
41 1 3.7296 3.4655 -0.7242
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000710209670.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:27
Heat of formation + Delta-G solvation = -74.978976 kcal
Electronic energy + Delta-G solvation = -18384.270050 eV
Core-core repulsion = 15683.911892 eV
Total energy + Delta-G solvation = -2700.358158 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.63157 -36.55249 -34.00516 -33.41229 -32.14834 -30.28122 -28.87908 -26.20911
-25.21847 -23.17547 -22.09213 -21.40732 -20.03424 -18.95389 -16.47039 -16.23012
-15.53053 -15.19781 -14.75033 -14.48668 -14.33803 -13.67038 -13.35176 -13.12850
-12.82544 -12.61337 -12.17014 -12.06977 -11.81538 -11.75287 -11.41775 -11.21289
-11.12870 -10.89689 -10.73385 -10.65780 -10.60808 -10.48833 -9.89272 -9.73079
-9.68060 -9.43172 -9.11871 -8.35096 -7.35421 -6.01419 -4.04047 3.31359
3.37490 3.41337 4.39389 4.45937 4.54569 4.85012 4.89553 4.91616
5.12036 5.19787 5.29184 5.34305 5.50333 5.60995 5.68334 5.71978
5.80885 5.89711 5.98537 6.05031 6.05644 6.11211 6.17295 6.19176
6.27735 6.35803 6.48516 6.50710 6.62106 6.76030 6.95777 7.58347
7.59994 7.74852 7.88604 7.99850 8.01476 8.43820 9.03113 9.60211
11.09708
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.031229 B = 0.005363 C = 0.004975
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 896.377044 B = 5219.415714 C = 5626.405856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.127 4.127
3 C -0.148 4.148
4 C 0.139 3.861
5 O -0.539 6.539
6 C -0.146 4.146
7 C -0.111 4.111
8 C 0.053 3.947
9 N -0.530 5.530
10 C 0.057 3.943
11 C -0.010 4.010
12 C -0.518 4.518
13 H 0.056 0.944
14 C 0.057 3.943
15 N -0.897 5.897
16 Si 0.892 3.108
17 H -0.280 1.280
18 H -0.287 1.287
19 H -0.273 1.273
20 C 0.071 3.929
21 H 0.051 0.949
22 H 0.054 0.946
23 H 0.053 0.947
24 H 0.060 0.940
25 H 0.065 0.935
26 H 0.072 0.928
27 H 0.071 0.929
28 H 0.359 0.641
29 H 0.062 0.938
30 H 0.067 0.933
31 H 0.071 0.929
32 H 0.058 0.942
33 H 0.038 0.962
34 H 0.068 0.932
35 H 0.061 0.939
36 H 0.061 0.939
37 H 0.017 0.983
38 H 0.016 0.984
39 H 0.260 0.740
40 H 0.055 0.945
41 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.609 -14.966 -4.707 16.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.165 4.165
3 C -0.186 4.186
4 C 0.098 3.902
5 O -0.343 6.343
6 C -0.183 4.183
7 C -0.149 4.149
8 C -0.076 4.076
9 N -0.253 5.253
10 C -0.070 4.070
11 C -0.048 4.048
12 C -0.557 4.557
13 H 0.074 0.926
14 C -0.144 4.144
15 N -0.536 5.536
16 Si 0.720 3.280
17 H -0.206 1.206
18 H -0.213 1.213
19 H -0.198 1.198
20 C -0.058 4.058
21 H 0.070 0.930
22 H 0.073 0.927
23 H 0.073 0.927
24 H 0.078 0.922
25 H 0.084 0.916
26 H 0.090 0.910
27 H 0.089 0.911
28 H 0.205 0.795
29 H 0.081 0.919
30 H 0.086 0.914
31 H 0.089 0.911
32 H 0.076 0.924
33 H 0.056 0.944
34 H 0.087 0.913
35 H 0.079 0.921
36 H 0.080 0.920
37 H 0.035 0.965
38 H 0.035 0.965
39 H 0.070 0.930
40 H 0.073 0.927
41 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -5.237 -14.540 -5.036 16.254
hybrid contribution -0.310 0.964 1.019 1.436
sum -5.547 -13.576 -4.017 15.206
Atomic orbital electron populations
1.21759 0.95829 1.01327 1.01964 1.21589 0.96048 0.97006 1.01815
1.22290 0.95958 0.97121 1.03217 1.21272 0.90907 0.93917 0.84095
1.86727 1.76756 1.30850 1.39988 1.22305 0.97143 0.99820 0.99071
1.21510 0.94850 0.96953 1.01576 1.22035 0.99698 0.93055 0.92782
1.62231 1.06629 1.15864 1.40587 1.22330 0.98940 0.85799 0.99966
1.19683 0.96624 0.95229 0.93292 1.21181 1.28561 0.96393 1.09555
0.92573 1.25015 0.95144 0.98728 0.95472 1.69961 1.35102 1.35437
1.13105 0.86594 0.79470 0.84792 0.77168 1.20648 1.21257 1.19807
1.21979 0.89401 0.92957 1.01437 0.92978 0.92672 0.92744 0.92163
0.91646 0.90967 0.91060 0.79532 0.91901 0.91449 0.91053 0.92354
0.94352 0.91349 0.92058 0.92019 0.96465 0.96535 0.93048 0.92714
0.90801
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16
2 C -0.13 -1.19 5.24 -26.73 -0.14 -1.33 16
3 C -0.15 -1.77 4.51 -26.73 -0.12 -1.89 16
4 C 0.14 1.96 0.75 -90.54 -0.07 1.90 16
5 O -0.54 -7.68 12.30 -35.23 -0.43 -8.12 16
6 C -0.15 -1.90 4.42 -26.60 -0.12 -2.01 16
7 C -0.11 -1.58 5.94 -26.65 -0.16 -1.74 16
8 C 0.05 0.93 5.05 -3.84 -0.02 0.91 16
9 N -0.53 -10.25 4.74 -234.68 -1.11 -11.37 16
10 C 0.06 1.25 5.30 -3.82 -0.02 1.23 16
11 C -0.01 -0.26 4.27 -27.89 -0.12 -0.38 16
12 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16
13 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16
14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
15 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16
16 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16
17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
20 C 0.07 1.28 3.81 -3.84 -0.01 1.26 16
21 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16
23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
24 H 0.06 0.51 6.88 -51.93 -0.36 0.15 16
25 H 0.06 0.60 6.41 -51.93 -0.33 0.26 16
26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
28 H 0.36 3.68 7.52 45.56 0.34 4.03 16
29 H 0.06 0.67 6.51 -51.93 -0.34 0.33 16
30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
31 H 0.07 1.03 7.80 -51.93 -0.40 0.63 16
32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.04 0.75 6.76 -51.93 -0.35 0.40 16
34 H 0.07 1.19 8.06 -51.93 -0.42 0.78 16
35 H 0.06 1.34 8.06 -51.93 -0.42 0.92 16
36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16
37 H 0.02 0.47 6.51 -51.93 -0.34 0.14 16
38 H 0.02 0.46 6.68 -51.93 -0.35 0.11 16
39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
40 H 0.05 1.09 6.61 -51.93 -0.34 0.74 16
41 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16
LS Contribution 312.07 15.07 4.70 4.70
Total: -1.00 -30.91 312.07 -8.60 -39.51
By element:
Atomic # 1 Polarization: 8.03 SS G_CDS: -6.65 Total: 1.38 kcal
Atomic # 6 Polarization: -15.76 SS G_CDS: -0.82 Total: -16.58 kcal
Atomic # 7 Polarization: -37.35 SS G_CDS: -0.38 Total: -37.72 kcal
Atomic # 8 Polarization: -7.68 SS G_CDS: -0.43 Total: -8.12 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal
Total LS contribution 4.70 Total: 4.70 kcal
Total: -30.91 -8.60 -39.51 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710209670.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.465 kcal
(2) G-P(sol) polarization free energy of solvation -30.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds