Wall clock time and date at job start Mon Mar 30 2020 03:30:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52997 * 109.47452 * 2 1
4 4 C 1.53004 * 109.47394 * 119.99908 * 2 1 3
5 5 O 1.42902 * 109.57466 * 300.16040 * 4 2 1
6 6 C 1.53113 * 109.52663 * 179.97438 * 4 2 1
7 7 C 1.53039 * 109.28246 * 182.44123 * 6 4 2
8 8 N 1.46846 * 109.52195 * 59.17585 * 7 6 4
9 9 C 1.46896 * 111.00009 * 174.16045 * 8 7 6
10 10 C 1.52996 * 109.47256 * 170.00096 * 9 8 7
11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8
12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9
13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9
14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10
15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10
16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11
17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11
18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11
19 19 C 1.46842 * 111.20246 * 298.26169 * 8 7 6
20 20 C 1.53040 * 109.52316 * 61.74167 * 19 8 7
21 21 H 1.09008 * 109.47017 * 299.99779 * 1 2 3
22 22 H 1.09001 * 109.47358 * 60.00286 * 1 2 3
23 23 H 1.08999 * 109.47354 * 180.02562 * 1 2 3
24 24 H 1.09004 * 109.47529 * 239.99692 * 2 1 3
25 25 H 1.08998 * 109.47362 * 59.99985 * 3 2 1
26 26 H 1.09003 * 109.47759 * 180.02562 * 3 2 1
27 27 H 1.09001 * 109.46606 * 300.00174 * 3 2 1
28 28 H 0.96693 * 114.00353 * 179.84246 * 5 4 2
29 29 H 1.09006 * 109.50561 * 62.49732 * 6 4 2
30 30 H 1.09007 * 109.50381 * 302.38188 * 6 4 2
31 31 H 1.09007 * 109.45964 * 299.16347 * 7 6 4
32 32 H 1.08997 * 109.46289 * 179.19858 * 7 6 4
33 33 H 1.09004 * 109.46774 * 50.00295 * 9 8 7
34 34 H 1.09000 * 109.47723 * 290.00683 * 9 8 7
35 35 H 1.09004 * 109.47066 * 60.00378 * 10 9 8
36 36 H 1.08994 * 109.47405 * 300.00209 * 10 9 8
37 37 H 0.97005 * 119.99651 * 179.97438 * 14 13 11
38 38 H 1.08995 * 109.46673 * 181.75419 * 19 8 7
39 39 H 1.09002 * 109.46312 * 301.72950 * 19 8 7
40 40 H 1.08997 * 109.50368 * 180.88328 * 20 19 8
41 41 H 1.08992 * 109.50201 * 60.76083 * 20 19 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7212 1.2493
5 8 1.5618 -0.0515 2.4175
6 6 3.5711 -0.7225 1.2502
7 6 4.0752 -1.4976 2.4697
8 7 3.5667 -2.8744 2.4206
9 6 4.1417 -3.6868 3.5010
10 6 3.4111 -5.0290 3.5740
11 6 4.0006 -5.8622 4.6827
12 1 4.8147 -5.4731 5.2763
13 6 3.4965 -7.1188 4.9435
14 7 2.5050 -7.5924 4.2210
15 14 4.2222 -8.1484 6.3228
16 1 5.3191 -7.3933 6.9799
17 1 3.1656 -8.4544 7.3206
18 1 4.7583 -9.4160 5.7651
19 6 2.0992 -2.9005 2.4665
20 6 1.5362 -2.1673 1.2468
21 1 -0.3633 0.5138 0.8901
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3634 -1.0276 0.0005
24 1 1.8933 -0.5139 -0.8900
25 1 1.6767 1.9563 0.8900
26 1 3.1300 1.4425 -0.0005
27 1 1.6766 1.9562 -0.8900
28 1 1.8459 -0.4577 3.2478
29 1 3.9359 0.3037 1.2950
30 1 3.9352 -1.1993 0.3400
31 1 3.7222 -1.0123 3.3797
32 1 5.1650 -1.5125 2.4655
33 1 4.0311 -3.1608 4.4493
34 1 5.1995 -3.8592 3.3024
35 1 3.5217 -5.5550 2.6256
36 1 2.3534 -4.8566 3.7726
37 1 2.1506 -8.4767 4.4042
38 1 1.7539 -3.9343 2.4600
39 1 1.7555 -2.4086 3.3765
40 1 0.4471 -2.1732 1.2893
41 1 1.8683 -2.6667 0.3368
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000710581242.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:30:23
Heat of formation + Delta-G solvation = -69.729281 kcal
Electronic energy + Delta-G solvation = -18405.309628 eV
Core-core repulsion = 15705.179113 eV
Total energy + Delta-G solvation = -2700.130514 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.01883 -36.61588 -34.14091 -33.24291 -31.37046 -30.85284 -28.63692 -27.15251
-25.09524 -23.38621 -22.73332 -20.66295 -19.78329 -19.25857 -17.13885 -16.38099
-15.21975 -14.73385 -14.55914 -14.48494 -14.21138 -14.12355 -13.82675 -13.40294
-12.80646 -12.50114 -12.31478 -12.11172 -11.71808 -11.56967 -11.36415 -11.28735
-11.14329 -10.97865 -10.91336 -10.79908 -10.70405 -10.51168 -9.97959 -9.89643
-9.54472 -9.28295 -9.05303 -8.36899 -7.72090 -6.02958 -4.05257 3.29522
3.37113 3.41052 4.30417 4.35615 4.51379 4.72263 4.74646 4.97711
5.12592 5.33199 5.36167 5.37400 5.46918 5.55366 5.66039 5.67797
5.78673 5.85553 5.89514 5.96540 5.98331 6.05648 6.13973 6.22502
6.25266 6.33777 6.35726 6.47425 6.52554 6.59111 6.89844 7.47310
7.58577 7.75003 7.75865 7.82514 8.01707 8.40061 9.01521 9.58776
11.08460
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.051357 B = 0.004746 C = 0.004528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 545.068565 B = 5898.284924 C = 6182.598996
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.079 4.079
3 C -0.144 4.144
4 C 0.138 3.862
5 O -0.560 6.560
6 C -0.140 4.140
7 C 0.051 3.949
8 N -0.539 5.539
9 C 0.062 3.938
10 C 0.020 3.980
11 C -0.522 4.522
12 H 0.055 0.945
13 C 0.058 3.942
14 N -0.894 5.894
15 Si 0.892 3.108
16 H -0.273 1.273
17 H -0.284 1.284
18 H -0.283 1.283
19 C 0.048 3.952
20 C -0.142 4.142
21 H 0.062 0.938
22 H 0.048 0.952
23 H 0.056 0.944
24 H 0.077 0.923
25 H 0.061 0.939
26 H 0.054 0.946
27 H 0.048 0.952
28 H 0.372 0.628
29 H 0.070 0.930
30 H 0.077 0.923
31 H 0.025 0.975
32 H 0.072 0.928
33 H 0.019 0.981
34 H 0.062 0.938
35 H 0.025 0.975
36 H 0.020 0.980
37 H 0.260 0.740
38 H 0.098 0.902
39 H 0.025 0.975
40 H 0.072 0.928
41 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.601 15.207 -7.473 17.020
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.097 4.097
3 C -0.202 4.202
4 C 0.098 3.902
5 O -0.367 6.367
6 C -0.178 4.178
7 C -0.077 4.077
8 N -0.264 5.264
9 C -0.065 4.065
10 C -0.017 4.017
11 C -0.560 4.560
12 H 0.073 0.927
13 C -0.143 4.143
14 N -0.533 5.533
15 Si 0.720 3.280
16 H -0.198 1.198
17 H -0.210 1.210
18 H -0.209 1.209
19 C -0.080 4.080
20 C -0.180 4.180
21 H 0.081 0.919
22 H 0.067 0.933
23 H 0.075 0.925
24 H 0.096 0.904
25 H 0.080 0.920
26 H 0.073 0.927
27 H 0.067 0.933
28 H 0.221 0.779
29 H 0.089 0.911
30 H 0.095 0.905
31 H 0.043 0.957
32 H 0.091 0.909
33 H 0.037 0.963
34 H 0.081 0.919
35 H 0.043 0.957
36 H 0.038 0.962
37 H 0.070 0.930
38 H 0.116 0.884
39 H 0.043 0.957
40 H 0.091 0.909
41 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -1.832 15.238 -8.380 17.487
hybrid contribution 0.439 -0.762 1.970 2.158
sum -1.392 14.476 -6.410 15.893
Atomic orbital electron populations
1.21815 0.94891 1.01919 1.01618 1.21077 0.96416 0.96390 0.95865
1.21815 1.00794 0.95895 1.01654 1.21219 0.92116 0.91061 0.85841
1.86438 1.77245 1.57183 1.15838 1.22292 0.95846 0.99985 0.99716
1.22073 1.00150 0.89394 0.96101 1.62049 1.06531 1.09632 1.48227
1.22321 0.99282 0.95577 0.89273 1.19250 0.95362 0.89602 0.97463
1.21221 1.17928 1.00523 1.16375 0.92704 1.24993 0.95022 0.97792
0.96489 1.69975 1.25668 1.17895 1.39736 0.86534 0.79079 0.80288
0.82091 1.19757 1.21025 1.20949 1.22213 0.88086 1.02298 0.95419
1.22335 1.00559 0.95015 1.00101 0.91937 0.93281 0.92479 0.90438
0.91959 0.92723 0.93272 0.77922 0.91115 0.90450 0.95659 0.90913
0.96252 0.91916 0.95694 0.96159 0.93019 0.88432 0.95695 0.90930
0.90474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.56 8.70 37.15 0.32 -1.24 16
2 C -0.08 -0.88 2.34 -90.62 -0.21 -1.09 16
3 C -0.14 -1.47 8.70 37.16 0.32 -1.15 16
4 C 0.14 1.74 0.47 -90.49 -0.04 1.70 16
5 O -0.56 -7.43 11.61 -35.23 -0.41 -7.84 16
6 C -0.14 -1.76 4.68 -26.65 -0.12 -1.89 16
7 C 0.05 0.75 5.19 -3.83 -0.02 0.73 16
8 N -0.54 -9.60 4.81 -234.68 -1.13 -10.73 16
9 C 0.06 1.30 5.21 -3.83 -0.02 1.28 16
10 C 0.02 0.52 4.22 -27.88 -0.12 0.40 16
11 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16
12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16
13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
14 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16
15 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16
16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16
17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16
18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16
19 C 0.05 0.81 4.62 -3.84 -0.02 0.79 16
20 C -0.14 -2.00 4.68 -26.65 -0.12 -2.13 16
21 H 0.06 0.73 7.68 -51.92 -0.40 0.33 16
22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
23 H 0.06 0.62 6.50 -51.93 -0.34 0.28 16
24 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16
25 H 0.06 0.70 7.69 -51.93 -0.40 0.30 16
26 H 0.05 0.53 6.49 -51.93 -0.34 0.19 16
27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
28 H 0.37 4.70 5.86 45.56 0.27 4.96 16
29 H 0.07 0.81 6.58 -51.93 -0.34 0.47 16
30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16
31 H 0.03 0.36 6.85 -51.92 -0.36 0.00 16
32 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16
33 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16
34 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16
35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.02 0.54 6.21 -51.93 -0.32 0.22 16
37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16
38 H 0.10 1.94 5.81 -51.93 -0.30 1.63 16
39 H 0.02 0.42 6.84 -51.93 -0.36 0.06 16
40 H 0.07 0.98 6.58 -51.93 -0.34 0.64 16
41 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16
LS Contribution 306.29 15.07 4.62 4.62
Total: -1.00 -29.37 306.29 -8.22 -37.58
By element:
Atomic # 1 Polarization: 8.34 SS G_CDS: -6.57 Total: 1.78 kcal
Atomic # 6 Polarization: -15.59 SS G_CDS: -0.44 Total: -16.03 kcal
Atomic # 7 Polarization: -36.26 SS G_CDS: -0.39 Total: -36.66 kcal
Atomic # 8 Polarization: -7.43 SS G_CDS: -0.41 Total: -7.84 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -29.37 -8.22 -37.58 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710581242.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.145 kcal
(2) G-P(sol) polarization free energy of solvation -29.368 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.514 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.729 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds