Wall clock time and date at job start Mon Mar 30 2020 03:30:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52997 * 109.47452 * 2 1
4 4 C 1.53004 * 109.47394 * 119.99908 * 2 1 3
5 5 O 1.42902 * 109.57466 * 300.16040 * 4 2 1
6 6 C 1.53113 * 109.52663 * 179.97438 * 4 2 1
7 7 C 1.53039 * 109.28246 * 182.44123 * 6 4 2
8 8 N 1.46846 * 109.52195 * 59.17585 * 7 6 4
9 9 C 1.46896 * 111.00009 * 174.16045 * 8 7 6
10 10 C 1.52996 * 109.47256 * 170.00096 * 9 8 7
11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8
12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9
13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9
14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10
15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10
16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11
17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11
18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11
19 19 C 1.46842 * 111.20246 * 298.26169 * 8 7 6
20 20 C 1.53040 * 109.52316 * 61.74167 * 19 8 7
21 21 H 1.09008 * 109.47017 * 299.99779 * 1 2 3
22 22 H 1.09001 * 109.47358 * 60.00286 * 1 2 3
23 23 H 1.08999 * 109.47354 * 180.02562 * 1 2 3
24 24 H 1.09004 * 109.47529 * 239.99692 * 2 1 3
25 25 H 1.08998 * 109.47362 * 59.99985 * 3 2 1
26 26 H 1.09003 * 109.47759 * 180.02562 * 3 2 1
27 27 H 1.09001 * 109.46606 * 300.00174 * 3 2 1
28 28 H 0.96693 * 114.00353 * 179.84246 * 5 4 2
29 29 H 1.09006 * 109.50561 * 62.49732 * 6 4 2
30 30 H 1.09007 * 109.50381 * 302.38188 * 6 4 2
31 31 H 1.09007 * 109.45964 * 299.16347 * 7 6 4
32 32 H 1.08997 * 109.46289 * 179.19858 * 7 6 4
33 33 H 1.09004 * 109.46774 * 50.00295 * 9 8 7
34 34 H 1.09000 * 109.47723 * 290.00683 * 9 8 7
35 35 H 1.09004 * 109.47066 * 60.00378 * 10 9 8
36 36 H 1.08994 * 109.47405 * 300.00209 * 10 9 8
37 37 H 0.97005 * 119.99651 * 179.97438 * 14 13 11
38 38 H 1.08995 * 109.46673 * 181.75419 * 19 8 7
39 39 H 1.09002 * 109.46312 * 301.72950 * 19 8 7
40 40 H 1.08997 * 109.50368 * 180.88328 * 20 19 8
41 41 H 1.08992 * 109.50201 * 60.76083 * 20 19 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7212 1.2493
5 8 1.5618 -0.0515 2.4175
6 6 3.5711 -0.7225 1.2502
7 6 4.0752 -1.4976 2.4697
8 7 3.5667 -2.8744 2.4206
9 6 4.1417 -3.6868 3.5010
10 6 3.4111 -5.0290 3.5740
11 6 4.0006 -5.8622 4.6827
12 1 4.8147 -5.4731 5.2763
13 6 3.4965 -7.1188 4.9435
14 7 2.5050 -7.5924 4.2210
15 14 4.2222 -8.1484 6.3228
16 1 5.3191 -7.3933 6.9799
17 1 3.1656 -8.4544 7.3206
18 1 4.7583 -9.4160 5.7651
19 6 2.0992 -2.9005 2.4665
20 6 1.5362 -2.1673 1.2468
21 1 -0.3633 0.5138 0.8901
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3634 -1.0276 0.0005
24 1 1.8933 -0.5139 -0.8900
25 1 1.6767 1.9563 0.8900
26 1 3.1300 1.4425 -0.0005
27 1 1.6766 1.9562 -0.8900
28 1 1.8459 -0.4577 3.2478
29 1 3.9359 0.3037 1.2950
30 1 3.9352 -1.1993 0.3400
31 1 3.7222 -1.0123 3.3797
32 1 5.1650 -1.5125 2.4655
33 1 4.0311 -3.1608 4.4493
34 1 5.1995 -3.8592 3.3024
35 1 3.5217 -5.5550 2.6256
36 1 2.3534 -4.8566 3.7726
37 1 2.1506 -8.4767 4.4042
38 1 1.7539 -3.9343 2.4600
39 1 1.7555 -2.4086 3.3765
40 1 0.4471 -2.1732 1.2893
41 1 1.8683 -2.6667 0.3368
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000710581242.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:30:23
Heat of formation + Delta-G solvation = -89.466846 kcal
Electronic energy + Delta-G solvation = -18406.165513 eV
Core-core repulsion = 15705.179113 eV
Total energy + Delta-G solvation = -2700.986399 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.16574 -37.97172 -35.27003 -35.06063 -32.93483 -32.06249 -30.29206 -28.02032
-26.76176 -24.97658 -23.95549 -22.12514 -21.01582 -20.44049 -18.71426 -18.05192
-16.58878 -16.47241 -15.90046 -15.75191 -15.49770 -15.25630 -14.96573 -14.79768
-14.18945 -13.89560 -13.73633 -13.25848 -13.09993 -12.92858 -12.79561 -12.56952
-12.49862 -12.37962 -12.28690 -12.23064 -11.85170 -11.70372 -11.64739 -11.38250
-11.22912 -10.84996 -10.59722 -10.46265 -9.17774 -8.21852 -6.32962 1.39532
1.39872 1.53103 2.39217 3.03328 3.11910 3.33199 3.71728 3.72913
3.86296 4.17387 4.24393 4.26290 4.37791 4.46734 4.51678 4.58357
4.61710 4.67664 4.85510 4.92053 4.93828 4.99101 5.02076 5.04998
5.09230 5.10340 5.19323 5.27338 5.33673 5.43736 5.50666 5.60376
5.64847 5.76882 6.06423 6.29999 6.32598 6.73352 6.83854 7.36354
8.90287
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.051357 B = 0.004746 C = 0.004528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 545.068565 B = 5898.284924 C = 6182.598996
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.080 4.080
3 C -0.140 4.140
4 C 0.141 3.859
5 O -0.564 6.564
6 C -0.133 4.133
7 C 0.049 3.951
8 N -0.546 5.546
9 C 0.077 3.923
10 C 0.030 3.970
11 C -0.545 4.545
12 H 0.059 0.941
13 C 0.003 3.997
14 N -0.931 5.931
15 Si 0.966 3.034
16 H -0.262 1.262
17 H -0.278 1.278
18 H -0.278 1.278
19 C 0.051 3.949
20 C -0.134 4.134
21 H 0.050 0.950
22 H 0.064 0.936
23 H 0.051 0.949
24 H 0.087 0.913
25 H 0.050 0.950
26 H 0.060 0.940
27 H 0.063 0.937
28 H 0.374 0.626
29 H 0.090 0.910
30 H 0.079 0.921
31 H 0.033 0.967
32 H 0.080 0.920
33 H 0.021 0.979
34 H 0.063 0.937
35 H -0.008 1.008
36 H 0.001 0.999
37 H 0.264 0.736
38 H 0.060 0.940
39 H 0.026 0.974
40 H 0.077 0.923
41 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.822 16.528 -7.510 18.172
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.098 4.098
3 C -0.198 4.198
4 C 0.101 3.899
5 O -0.372 6.372
6 C -0.171 4.171
7 C -0.078 4.078
8 N -0.271 5.271
9 C -0.050 4.050
10 C -0.007 4.007
11 C -0.583 4.583
12 H 0.078 0.922
13 C -0.195 4.195
14 N -0.571 5.571
15 Si 0.790 3.210
16 H -0.186 1.186
17 H -0.204 1.204
18 H -0.203 1.203
19 C -0.077 4.077
20 C -0.172 4.172
21 H 0.069 0.931
22 H 0.083 0.917
23 H 0.070 0.930
24 H 0.105 0.895
25 H 0.069 0.931
26 H 0.079 0.921
27 H 0.082 0.918
28 H 0.222 0.778
29 H 0.108 0.892
30 H 0.097 0.903
31 H 0.051 0.949
32 H 0.098 0.902
33 H 0.039 0.961
34 H 0.082 0.918
35 H 0.010 0.990
36 H 0.019 0.981
37 H 0.073 0.927
38 H 0.078 0.922
39 H 0.044 0.956
40 H 0.095 0.905
41 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -1.048 16.581 -8.423 18.628
hybrid contribution 0.162 -1.163 1.952 2.278
sum -0.887 15.418 -6.471 16.745
Atomic orbital electron populations
1.21797 0.94767 1.01684 1.01842 1.21124 0.96563 0.97010 0.95123
1.21779 1.01156 0.94989 1.01834 1.21250 0.92251 0.89937 0.86487
1.86450 1.77410 1.57189 1.16102 1.22260 0.95576 1.00618 0.98611
1.22187 1.00609 0.87437 0.97596 1.62002 1.06813 1.11599 1.46690
1.21983 0.98670 0.93801 0.90564 1.19064 0.94794 0.91718 0.95159
1.21658 1.18222 1.01349 1.17095 0.92241 1.25941 0.95307 0.99174
0.99120 1.70107 1.27012 1.18482 1.41509 0.85392 0.78527 0.78384
0.78695 1.18586 1.20365 1.20335 1.22102 0.87866 1.00546 0.97138
1.22282 1.00696 0.95970 0.98282 0.93097 0.91673 0.92959 0.89507
0.93073 0.92089 0.91824 0.77753 0.89159 0.90284 0.94927 0.90188
0.96058 0.91841 0.98961 0.98077 0.92747 0.92177 0.95563 0.90491
0.90673
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.83 8.70 71.98 0.63 -2.20 16
2 C -0.08 -1.58 2.34 -10.80 -0.03 -1.61 16
3 C -0.14 -2.46 8.70 71.98 0.63 -1.83 16
4 C 0.14 3.31 0.47 -10.71 -0.01 3.31 16
5 O -0.56 -14.08 11.61 -148.98 -1.73 -15.81 16
6 C -0.13 -3.02 4.68 30.65 0.14 -2.88 16
7 C 0.05 1.35 5.19 86.33 0.45 1.80 16
8 N -0.55 -19.40 4.81 -896.38 -4.31 -23.71 16
9 C 0.08 3.27 5.21 86.30 0.45 3.72 16
10 C 0.03 1.59 4.22 29.85 0.13 1.72 16
11 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16
12 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16
13 C 0.00 0.15 5.46 84.66 0.46 0.61 16
14 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16
15 Si 0.97 44.32 29.54 68.60 2.03 46.34 16
16 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16
17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16
18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
19 C 0.05 1.79 4.62 86.33 0.40 2.19 16
20 C -0.13 -3.73 4.68 30.65 0.14 -3.59 16
21 H 0.05 1.12 7.68 -2.38 -0.02 1.10 16
22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
23 H 0.05 1.06 6.50 -2.39 -0.02 1.05 16
24 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
25 H 0.05 1.02 7.69 -2.39 -0.02 1.00 16
26 H 0.06 0.99 6.49 -2.39 -0.02 0.97 16
27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
28 H 0.37 8.96 5.86 -74.06 -0.43 8.52 16
29 H 0.09 1.76 6.58 -2.38 -0.02 1.75 16
30 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16
31 H 0.03 0.86 6.85 -2.38 -0.02 0.85 16
32 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16
33 H 0.02 0.89 8.08 -2.38 -0.02 0.87 16
34 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16
35 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16
36 H 0.00 0.06 6.21 -2.39 -0.01 0.04 16
37 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16
38 H 0.06 2.53 5.81 -2.39 -0.01 2.52 16
39 H 0.03 0.89 6.84 -2.39 -0.02 0.88 16
40 H 0.08 2.06 6.58 -2.39 -0.02 2.05 16
41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
Total: -1.00 -63.26 306.29 0.46 -62.80
By element:
Atomic # 1 Polarization: 16.04 SS G_CDS: 0.56 Total: 16.59 kcal
Atomic # 6 Polarization: -33.33 SS G_CDS: 3.63 Total: -29.71 kcal
Atomic # 7 Polarization: -76.20 SS G_CDS: -4.02 Total: -80.22 kcal
Atomic # 8 Polarization: -14.08 SS G_CDS: -1.73 Total: -15.81 kcal
Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal
Total: -63.26 0.46 -62.80 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000710581242.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.663 kcal
(2) G-P(sol) polarization free energy of solvation -63.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.928 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.804 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.467 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds