Wall clock time and date at job start Mon Mar 30 2020 03:22:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52999 * 109.90693 * 2 1
4 4 O 1.42903 * 109.47256 * 300.35388 * 3 2 1
5 5 C 1.53993 * 109.91588 * 238.89839 * 2 1 3
6 6 C 1.54597 * 105.13841 * 241.67084 * 5 2 1
7 7 C 1.54937 * 102.92128 * 21.95971 * 6 5 2
8 8 N 1.47896 * 110.08084 * 121.20862 * 2 1 3
9 9 C 1.46895 * 111.00209 * 333.59946 * 8 2 1
10 10 C 1.52998 * 109.47286 * 170.00120 * 9 8 2
11 11 C 1.53002 * 109.47203 * 180.02562 * 10 9 8
12 12 C 1.53006 * 109.47212 * 180.02562 * 11 10 9
13 13 C 1.50699 * 109.46799 * 179.97438 * 12 11 10
14 14 H 1.07989 * 120.00457 * 359.97438 * 13 12 11
15 15 C 1.37879 * 119.99410 * 179.97438 * 13 12 11
16 16 N 1.31516 * 119.99829 * 180.02562 * 15 13 12
17 17 Si 1.86806 * 120.00250 * 0.02562 * 15 13 12
18 18 H 1.48495 * 109.47057 * 90.00109 * 17 15 13
19 19 H 1.48500 * 109.46979 * 209.99779 * 17 15 13
20 20 H 1.48496 * 109.46962 * 330.00125 * 17 15 13
21 21 H 1.08999 * 109.46932 * 59.30000 * 1 2 3
22 22 H 1.08999 * 109.46675 * 179.29711 * 1 2 3
23 23 H 1.08994 * 109.47064 * 299.30224 * 1 2 3
24 24 H 1.08997 * 109.47286 * 180.34948 * 3 2 1
25 25 H 1.09008 * 109.47201 * 60.34729 * 3 2 1
26 26 H 0.96700 * 114.00311 * 180.02562 * 4 3 2
27 27 H 1.08999 * 110.31198 * 0.59026 * 5 2 1
28 28 H 1.09000 * 110.31015 * 122.66186 * 5 2 1
29 29 H 1.08996 * 110.72679 * 140.31859 * 6 5 2
30 30 H 1.09000 * 110.72576 * 263.60069 * 6 5 2
31 31 H 1.08994 * 110.66893 * 81.01842 * 7 6 5
32 32 H 1.09002 * 110.66788 * 204.15209 * 7 6 5
33 33 H 1.09002 * 109.47242 * 290.00091 * 9 8 2
34 34 H 1.09000 * 109.47389 * 50.00007 * 9 8 2
35 35 H 1.09000 * 109.47452 * 300.00292 * 10 9 8
36 36 H 1.09003 * 109.47385 * 60.00306 * 10 9 8
37 37 H 1.09002 * 109.46987 * 299.99764 * 11 10 9
38 38 H 1.08996 * 109.47297 * 59.99918 * 11 10 9
39 39 H 1.09002 * 109.46768 * 299.99673 * 12 11 10
40 40 H 1.09000 * 109.46831 * 59.99866 * 12 11 10
41 41 H 0.97001 * 120.00063 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0510 1.4386 0.0000
4 8 1.5730 2.1183 -1.1626
5 6 2.0546 -0.7479 -1.2397
6 6 2.8579 -1.9441 -0.6796
7 6 2.2733 -2.1177 0.7446
8 7 2.0378 -0.7197 1.1880
9 6 1.0649 -0.6730 2.2876
10 6 1.5062 -1.6263 3.4000
11 6 0.4925 -1.5780 4.5450
12 6 0.9341 -2.5309 5.6577
13 6 -0.0641 -2.4828 6.7856
14 1 -0.9268 -1.8370 6.7162
15 6 0.1242 -3.2635 7.9064
16 7 -0.7471 -3.2220 8.8907
17 14 1.6170 -4.3801 8.0270
18 1 2.7390 -3.6401 8.6584
19 1 1.2810 -5.5681 8.8522
20 1 2.0175 -4.8197 6.6663
21 1 -0.3633 0.5247 -0.8836
22 1 -0.3632 -1.0276 -0.0126
23 1 -0.3633 0.5029 0.8961
24 1 3.1409 1.4303 -0.0063
25 1 1.6966 1.9534 0.8931
26 1 1.8653 3.0377 -1.2287
27 1 1.2225 -1.1025 -1.8479
28 1 2.7022 -0.0977 -1.8279
29 1 2.6863 -2.8384 -1.2786
30 1 3.9210 -1.7074 -0.6340
31 1 1.3363 -2.6734 0.7108
32 1 2.9919 -2.6126 1.3979
33 1 1.0089 0.3423 2.6803
34 1 0.0846 -0.9743 1.9185
35 1 1.5623 -2.6416 3.0074
36 1 2.4865 -1.3249 3.7692
37 1 0.4361 -0.5628 4.9377
38 1 -0.4876 -1.8796 4.1755
39 1 0.9908 -3.5462 5.2652
40 1 1.9141 -2.2288 6.0270
41 1 -0.6148 -3.7714 9.6790
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000723038681.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:09
Heat of formation + Delta-G solvation = -63.409587 kcal
Electronic energy + Delta-G solvation = -17857.515568 eV
Core-core repulsion = 15157.659096 eV
Total energy + Delta-G solvation = -2699.856472 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.09760 -36.69966 -35.05525 -32.85423 -31.80778 -31.17237 -28.20795 -26.85466
-25.17914 -24.27708 -22.24357 -20.58447 -19.80397 -18.72623 -17.51583 -16.63215
-15.94093 -15.88487 -15.04471 -14.61132 -14.41252 -14.12985 -13.63194 -13.31051
-12.83350 -12.69971 -12.57430 -12.16344 -11.97863 -11.79403 -11.50786 -11.38362
-11.18142 -11.04071 -10.84068 -10.61202 -10.58633 -10.44723 -10.06060 -9.85660
-9.65040 -9.46272 -9.12877 -8.50646 -8.38411 -6.01331 -3.98841 3.33041
3.40030 3.44467 3.58526 4.41889 4.48221 4.51139 4.64814 4.79145
5.04553 5.12413 5.26158 5.32158 5.34106 5.39410 5.43306 5.49122
5.53192 5.65313 5.77650 5.83421 5.87719 5.95070 5.96749 5.99737
6.11459 6.15933 6.21466 6.38854 6.67645 6.78066 6.92493 6.95666
7.13850 7.36487 7.43332 7.49487 7.83933 8.58090 9.04057 9.61736
11.12339
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.040867 B = 0.004304 C = 0.004066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 684.983618 B = 6503.423249 C = 6885.069216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.092 3.908
3 C 0.097 3.903
4 O -0.574 6.574
5 C -0.114 4.114
6 C -0.127 4.127
7 C 0.038 3.962
8 N -0.509 5.509
9 C 0.041 3.959
10 C -0.120 4.120
11 C -0.101 4.101
12 C -0.014 4.014
13 C -0.520 4.520
14 H 0.070 0.930
15 C 0.065 3.935
16 N -0.906 5.906
17 Si 0.881 3.119
18 H -0.277 1.277
19 H -0.288 1.288
20 H -0.266 1.266
21 H 0.066 0.934
22 H 0.054 0.946
23 H 0.062 0.938
24 H 0.052 0.948
25 H 0.046 0.954
26 H 0.378 0.622
27 H 0.066 0.934
28 H 0.073 0.927
29 H 0.069 0.931
30 H 0.072 0.928
31 H 0.047 0.953
32 H 0.085 0.915
33 H 0.072 0.928
34 H 0.046 0.954
35 H 0.056 0.944
36 H 0.063 0.937
37 H 0.053 0.947
38 H 0.051 0.949
39 H 0.014 0.986
40 H 0.011 0.989
41 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.091 6.843 -21.260 23.433
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.002 3.998
3 C 0.019 3.981
4 O -0.379 6.379
5 C -0.152 4.152
6 C -0.165 4.165
7 C -0.090 4.090
8 N -0.234 5.234
9 C -0.087 4.087
10 C -0.158 4.158
11 C -0.139 4.139
12 C -0.051 4.051
13 C -0.558 4.558
14 H 0.089 0.911
15 C -0.136 4.136
16 N -0.545 5.545
17 Si 0.708 3.292
18 H -0.203 1.203
19 H -0.215 1.215
20 H -0.190 1.190
21 H 0.085 0.915
22 H 0.073 0.927
23 H 0.081 0.919
24 H 0.070 0.930
25 H 0.064 0.936
26 H 0.225 0.775
27 H 0.085 0.915
28 H 0.091 0.909
29 H 0.088 0.912
30 H 0.091 0.909
31 H 0.065 0.935
32 H 0.104 0.896
33 H 0.091 0.909
34 H 0.064 0.936
35 H 0.075 0.925
36 H 0.082 0.918
37 H 0.071 0.929
38 H 0.069 0.931
39 H 0.032 0.968
40 H 0.029 0.971
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 7.243 6.434 -20.990 23.118
hybrid contribution 0.185 -0.411 0.212 0.498
sum 7.428 6.024 -20.778 22.873
Atomic orbital electron populations
1.22343 0.95470 1.01728 1.02818 1.21647 0.93756 0.93318 0.91029
1.21965 0.97441 0.91779 0.86935 1.86408 1.77256 1.29021 1.45183
1.22410 0.99776 0.96658 0.96389 1.22535 1.00208 0.97981 0.95783
1.23194 1.00042 0.90098 0.95667 1.64673 1.42516 1.10916 1.05338
1.22527 0.93831 1.00864 0.91462 1.21769 1.00459 0.98195 0.95380
1.21419 0.97199 1.00512 0.94775 1.19566 0.96673 0.94650 0.94206
1.21192 1.09012 1.25142 1.00414 0.91141 1.25050 0.96285 0.96700
0.95580 1.69924 1.36074 1.40976 1.07542 0.86759 0.83483 0.80574
0.78359 1.20306 1.21450 1.19035 0.91461 0.92690 0.91864 0.93020
0.93609 0.77512 0.91495 0.90855 0.91205 0.90923 0.93497 0.89620
0.90920 0.93584 0.92523 0.91794 0.92864 0.93065 0.96811 0.97112
0.92810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.90 6.79 37.16 0.25 -1.65 16
2 C 0.09 1.05 0.71 -130.53 -0.09 0.96 16
3 C 0.10 1.01 6.07 37.16 0.23 1.23 16
4 O -0.57 -5.39 12.53 -35.23 -0.44 -5.83 16
5 C -0.11 -1.18 5.98 -25.37 -0.15 -1.33 16
6 C -0.13 -1.25 7.06 -24.87 -0.18 -1.43 16
7 C 0.04 0.44 5.09 -1.90 -0.01 0.43 16
8 N -0.51 -6.49 5.02 -215.01 -1.08 -7.57 16
9 C 0.04 0.57 4.00 -3.83 -0.02 0.56 16
10 C -0.12 -1.96 4.87 -26.73 -0.13 -2.09 16
11 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16
12 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16
13 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16
14 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16
15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16
16 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16
17 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16
18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16
21 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16
22 H 0.05 0.64 7.70 -51.93 -0.40 0.24 16
23 H 0.06 0.75 6.66 -51.93 -0.35 0.40 16
24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
25 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16
26 H 0.38 1.89 9.12 45.56 0.42 2.30 16
27 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16
28 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16
29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
31 H 0.05 0.57 8.00 -51.93 -0.42 0.16 16
32 H 0.09 1.03 7.66 -51.93 -0.40 0.63 16
33 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16
34 H 0.05 0.65 5.69 -51.93 -0.30 0.35 16
35 H 0.06 0.91 6.79 -51.93 -0.35 0.56 16
36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16
38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16
39 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16
40 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16
41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16
LS Contribution 315.31 15.07 4.75 4.75
Total: -1.00 -31.88 315.31 -8.16 -40.03
By element:
Atomic # 1 Polarization: 5.13 SS G_CDS: -6.71 Total: -1.58 kcal
Atomic # 6 Polarization: -18.84 SS G_CDS: -0.78 Total: -19.61 kcal
Atomic # 7 Polarization: -34.94 SS G_CDS: -0.31 Total: -35.25 kcal
Atomic # 8 Polarization: -5.39 SS G_CDS: -0.44 Total: -5.83 kcal
Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal
Total LS contribution 4.75 Total: 4.75 kcal
Total: -31.88 -8.16 -40.03 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723038681.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.378 kcal
(2) G-P(sol) polarization free energy of solvation -31.876 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.254 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.410 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds