Wall clock time and date at job start Mon Mar 30 2020 03:22:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52999 * 109.90693 * 2 1
4 4 O 1.42903 * 109.47256 * 300.35388 * 3 2 1
5 5 C 1.53993 * 109.91588 * 238.89839 * 2 1 3
6 6 C 1.54597 * 105.13841 * 241.67084 * 5 2 1
7 7 C 1.54937 * 102.92128 * 21.95971 * 6 5 2
8 8 N 1.47896 * 110.08084 * 121.20862 * 2 1 3
9 9 C 1.46895 * 111.00209 * 333.59946 * 8 2 1
10 10 C 1.52998 * 109.47286 * 170.00120 * 9 8 2
11 11 C 1.53002 * 109.47203 * 180.02562 * 10 9 8
12 12 C 1.53006 * 109.47212 * 180.02562 * 11 10 9
13 13 C 1.50699 * 109.46799 * 179.97438 * 12 11 10
14 14 H 1.07989 * 120.00457 * 359.97438 * 13 12 11
15 15 C 1.37879 * 119.99410 * 179.97438 * 13 12 11
16 16 N 1.31516 * 119.99829 * 180.02562 * 15 13 12
17 17 Si 1.86806 * 120.00250 * 0.02562 * 15 13 12
18 18 H 1.48495 * 109.47057 * 90.00109 * 17 15 13
19 19 H 1.48500 * 109.46979 * 209.99779 * 17 15 13
20 20 H 1.48496 * 109.46962 * 330.00125 * 17 15 13
21 21 H 1.08999 * 109.46932 * 59.30000 * 1 2 3
22 22 H 1.08999 * 109.46675 * 179.29711 * 1 2 3
23 23 H 1.08994 * 109.47064 * 299.30224 * 1 2 3
24 24 H 1.08997 * 109.47286 * 180.34948 * 3 2 1
25 25 H 1.09008 * 109.47201 * 60.34729 * 3 2 1
26 26 H 0.96700 * 114.00311 * 180.02562 * 4 3 2
27 27 H 1.08999 * 110.31198 * 0.59026 * 5 2 1
28 28 H 1.09000 * 110.31015 * 122.66186 * 5 2 1
29 29 H 1.08996 * 110.72679 * 140.31859 * 6 5 2
30 30 H 1.09000 * 110.72576 * 263.60069 * 6 5 2
31 31 H 1.08994 * 110.66893 * 81.01842 * 7 6 5
32 32 H 1.09002 * 110.66788 * 204.15209 * 7 6 5
33 33 H 1.09002 * 109.47242 * 290.00091 * 9 8 2
34 34 H 1.09000 * 109.47389 * 50.00007 * 9 8 2
35 35 H 1.09000 * 109.47452 * 300.00292 * 10 9 8
36 36 H 1.09003 * 109.47385 * 60.00306 * 10 9 8
37 37 H 1.09002 * 109.46987 * 299.99764 * 11 10 9
38 38 H 1.08996 * 109.47297 * 59.99918 * 11 10 9
39 39 H 1.09002 * 109.46768 * 299.99673 * 12 11 10
40 40 H 1.09000 * 109.46831 * 59.99866 * 12 11 10
41 41 H 0.97001 * 120.00063 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0510 1.4386 0.0000
4 8 1.5730 2.1183 -1.1626
5 6 2.0546 -0.7479 -1.2397
6 6 2.8579 -1.9441 -0.6796
7 6 2.2733 -2.1177 0.7446
8 7 2.0378 -0.7197 1.1880
9 6 1.0649 -0.6730 2.2876
10 6 1.5062 -1.6263 3.4000
11 6 0.4925 -1.5780 4.5450
12 6 0.9341 -2.5309 5.6577
13 6 -0.0641 -2.4828 6.7856
14 1 -0.9268 -1.8370 6.7162
15 6 0.1242 -3.2635 7.9064
16 7 -0.7471 -3.2220 8.8907
17 14 1.6170 -4.3801 8.0270
18 1 2.7390 -3.6401 8.6584
19 1 1.2810 -5.5681 8.8522
20 1 2.0175 -4.8197 6.6663
21 1 -0.3633 0.5247 -0.8836
22 1 -0.3632 -1.0276 -0.0126
23 1 -0.3633 0.5029 0.8961
24 1 3.1409 1.4303 -0.0063
25 1 1.6966 1.9534 0.8931
26 1 1.8653 3.0377 -1.2287
27 1 1.2225 -1.1025 -1.8479
28 1 2.7022 -0.0977 -1.8279
29 1 2.6863 -2.8384 -1.2786
30 1 3.9210 -1.7074 -0.6340
31 1 1.3363 -2.6734 0.7108
32 1 2.9919 -2.6126 1.3979
33 1 1.0089 0.3423 2.6803
34 1 0.0846 -0.9743 1.9185
35 1 1.5623 -2.6416 3.0074
36 1 2.4865 -1.3249 3.7692
37 1 0.4361 -0.5628 4.9377
38 1 -0.4876 -1.8796 4.1755
39 1 0.9908 -3.5462 5.2652
40 1 1.9141 -2.2288 6.0270
41 1 -0.6148 -3.7714 9.6790
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000723038681.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:08
Heat of formation + Delta-G solvation = -86.383222 kcal
Electronic energy + Delta-G solvation = -17858.511780 eV
Core-core repulsion = 15157.659096 eV
Total energy + Delta-G solvation = -2700.852683 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.00857 -37.53905 -36.55603 -34.70250 -32.95463 -32.44979 -29.78253 -27.73796
-26.36485 -25.58547 -23.46779 -22.15657 -21.10252 -19.66490 -18.84704 -18.25011
-16.91012 -16.81562 -16.30327 -16.28568 -15.45288 -15.28361 -14.83470 -14.75506
-14.38330 -13.88791 -13.65343 -13.46683 -13.26589 -13.09147 -12.88408 -12.66475
-12.38723 -12.20863 -12.07948 -11.81885 -11.76166 -11.55770 -11.39595 -11.37325
-11.28024 -11.18785 -10.81554 -10.76649 -9.36956 -8.30003 -6.34255 1.35735
1.37541 1.50073 2.36303 2.71834 3.05381 3.54127 3.69070 3.82736
3.95713 4.09651 4.16110 4.22861 4.34311 4.45460 4.47166 4.55750
4.60086 4.61185 4.67987 4.77445 4.82088 4.87330 4.99127 5.04708
5.09840 5.12274 5.14818 5.18178 5.25686 5.26673 5.34256 5.56207
5.63579 5.67753 6.00067 6.09777 6.28925 6.73994 6.91941 7.30650
8.87081
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.040867 B = 0.004304 C = 0.004066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 684.983618 B = 6503.423249 C = 6885.069216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.086 3.914
3 C 0.102 3.898
4 O -0.583 6.583
5 C -0.111 4.111
6 C -0.120 4.120
7 C 0.032 3.968
8 N -0.514 5.514
9 C 0.049 3.951
10 C -0.107 4.107
11 C -0.094 4.094
12 C -0.011 4.011
13 C -0.536 4.536
14 H 0.029 0.971
15 C 0.001 3.999
16 N -0.953 5.953
17 Si 0.954 3.046
18 H -0.266 1.266
19 H -0.283 1.283
20 H -0.246 1.246
21 H 0.068 0.932
22 H 0.050 0.950
23 H 0.055 0.945
24 H 0.055 0.945
25 H 0.040 0.960
26 H 0.397 0.603
27 H 0.068 0.932
28 H 0.077 0.923
29 H 0.084 0.916
30 H 0.077 0.923
31 H 0.042 0.958
32 H 0.084 0.916
33 H 0.071 0.929
34 H 0.045 0.955
35 H 0.062 0.938
36 H 0.064 0.936
37 H 0.047 0.953
38 H 0.044 0.956
39 H 0.018 0.982
40 H 0.018 0.982
41 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.097 6.354 -22.961 25.502
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.004 4.004
3 C 0.023 3.977
4 O -0.391 6.391
5 C -0.150 4.150
6 C -0.158 4.158
7 C -0.096 4.096
8 N -0.239 5.239
9 C -0.079 4.079
10 C -0.145 4.145
11 C -0.132 4.132
12 C -0.049 4.049
13 C -0.574 4.574
14 H 0.047 0.953
15 C -0.195 4.195
16 N -0.594 5.594
17 Si 0.777 3.223
18 H -0.191 1.191
19 H -0.209 1.209
20 H -0.170 1.170
21 H 0.087 0.913
22 H 0.069 0.931
23 H 0.074 0.926
24 H 0.074 0.926
25 H 0.058 0.942
26 H 0.247 0.753
27 H 0.087 0.913
28 H 0.096 0.904
29 H 0.103 0.897
30 H 0.096 0.904
31 H 0.060 0.940
32 H 0.102 0.898
33 H 0.089 0.911
34 H 0.063 0.937
35 H 0.081 0.919
36 H 0.083 0.917
37 H 0.065 0.935
38 H 0.063 0.937
39 H 0.037 0.963
40 H 0.036 0.964
41 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 9.254 5.974 -22.719 25.248
hybrid contribution -0.539 -0.176 0.737 0.930
sum 8.716 5.798 -21.982 24.347
Atomic orbital electron populations
1.22288 0.95762 1.01355 1.02480 1.21760 0.93584 0.94084 0.90928
1.21844 0.97522 0.91216 0.87093 1.86362 1.77480 1.30646 1.44618
1.22392 0.99947 0.96762 0.95850 1.22515 1.00240 0.98425 0.94573
1.23268 0.99924 0.89469 0.96931 1.64670 1.41899 1.11737 1.05582
1.22343 0.94093 1.00046 0.91408 1.21583 0.99053 0.99255 0.94584
1.21289 0.98040 0.98996 0.94923 1.19532 0.95514 0.95988 0.93836
1.21565 1.08950 1.24422 1.02423 0.95266 1.26077 0.99886 0.98539
0.94988 1.70080 1.38531 1.42369 1.08455 0.85602 0.79074 0.78240
0.79399 1.19065 1.20877 1.16959 0.91296 0.93067 0.92646 0.92634
0.94170 0.75301 0.91312 0.90441 0.89702 0.90407 0.93995 0.89772
0.91085 0.93720 0.91934 0.91696 0.93460 0.93679 0.96327 0.96407
0.92491
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.51 6.79 71.98 0.49 -3.02 16
2 C 0.09 1.81 0.71 3.67 0.00 1.81 16
3 C 0.10 1.93 6.07 71.98 0.44 2.36 16
4 O -0.58 -9.79 12.53 -148.98 -1.87 -11.65 16
5 C -0.11 -2.04 5.98 31.47 0.19 -1.85 16
6 C -0.12 -2.05 7.06 31.80 0.22 -1.83 16
7 C 0.03 0.68 5.09 86.65 0.44 1.12 16
8 N -0.51 -12.19 5.02 -834.15 -4.19 -16.37 16
9 C 0.05 1.32 4.00 86.30 0.34 1.66 16
10 C -0.11 -3.33 4.87 30.59 0.15 -3.18 16
11 C -0.09 -3.74 5.15 30.60 0.16 -3.58 16
12 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16
13 C -0.54 -31.89 9.66 25.60 0.25 -31.64 16
14 H 0.03 1.91 7.99 -2.92 -0.02 1.89 16
15 C 0.00 0.09 5.47 84.65 0.46 0.55 16
16 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16
17 Si 0.95 45.09 27.47 68.60 1.88 46.98 16
18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16
20 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16
21 H 0.07 1.47 7.68 -2.39 -0.02 1.45 16
22 H 0.05 1.13 7.70 -2.39 -0.02 1.12 16
23 H 0.05 1.27 6.66 -2.39 -0.02 1.26 16
24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
25 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16
26 H 0.40 3.12 9.12 -74.06 -0.68 2.45 16
27 H 0.07 1.23 7.68 -2.39 -0.02 1.22 16
28 H 0.08 1.37 7.51 -2.39 -0.02 1.35 16
29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
31 H 0.04 0.94 8.00 -2.39 -0.02 0.92 16
32 H 0.08 1.83 7.66 -2.39 -0.02 1.81 16
33 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16
34 H 0.04 1.21 5.69 -2.39 -0.01 1.20 16
35 H 0.06 1.88 6.79 -2.39 -0.02 1.86 16
36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16
37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
39 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16
40 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16
41 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16
Total: -1.00 -68.28 315.31 -0.35 -68.63
By element:
Atomic # 1 Polarization: 11.01 SS G_CDS: 0.25 Total: 11.26 kcal
Atomic # 6 Polarization: -41.28 SS G_CDS: 3.26 Total: -38.02 kcal
Atomic # 7 Polarization: -73.31 SS G_CDS: -3.89 Total: -77.20 kcal
Atomic # 8 Polarization: -9.79 SS G_CDS: -1.87 Total: -11.65 kcal
Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal
Total: -68.28 -0.35 -68.63 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723038681.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.752 kcal
(2) G-P(sol) polarization free energy of solvation -68.278 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.029 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.383 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds