Wall clock time and date at job start Mon Mar 30 2020 04:39:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53000 * 109.47598 * 2 1
4 4 C 1.52997 * 109.47327 * 120.00456 * 2 1 3
5 5 H 1.09005 * 109.57344 * 184.12901 * 4 2 1
6 6 C 1.53090 * 109.52199 * 304.28544 * 4 2 1
7 7 O 1.42901 * 109.41594 * 177.51120 * 6 4 2
8 8 C 1.42898 * 114.10304 * 298.84758 * 7 6 4
9 9 C 1.53099 * 109.41646 * 61.15201 * 8 7 6
10 10 C 1.53174 * 109.16282 * 302.39665 * 9 8 7
11 11 H 1.08995 * 109.54299 * 297.11141 * 10 9 8
12 12 N 1.46897 * 109.54258 * 176.84248 * 10 9 8
13 13 C 1.46899 * 111.00047 * 85.44116 * 12 10 9
14 14 C 1.53002 * 109.47683 * 179.97438 * 13 12 10
15 15 C 1.50692 * 109.47436 * 180.02562 * 14 13 12
16 16 H 1.08005 * 119.99875 * 0.02562 * 15 14 13
17 17 C 1.37882 * 120.00160 * 179.97438 * 15 14 13
18 18 N 1.31513 * 119.99767 * 0.02562 * 17 15 14
19 19 Si 1.86795 * 120.00170 * 179.97438 * 17 15 14
20 20 H 1.48504 * 109.46941 * 359.97438 * 19 17 15
21 21 H 1.48495 * 109.47308 * 120.00020 * 19 17 15
22 22 H 1.48498 * 109.47123 * 240.00401 * 19 17 15
23 23 H 1.08991 * 109.47203 * 59.99622 * 1 2 3
24 24 H 1.08993 * 109.47246 * 180.02562 * 1 2 3
25 25 H 1.09003 * 109.46818 * 299.99704 * 1 2 3
26 26 H 1.09003 * 109.46818 * 240.00296 * 2 1 3
27 27 H 1.08991 * 109.47606 * 174.39995 * 3 2 1
28 28 H 1.09000 * 109.46989 * 294.40364 * 3 2 1
29 29 H 1.09006 * 109.46345 * 54.39940 * 3 2 1
30 30 H 1.08993 * 109.48525 * 297.49858 * 6 4 2
31 31 H 1.09000 * 109.47820 * 57.53398 * 6 4 2
32 32 H 1.09000 * 109.47921 * 301.17243 * 8 7 6
33 33 H 1.09000 * 109.49359 * 181.14370 * 8 7 6
34 34 H 1.08994 * 109.52289 * 182.48652 * 9 8 7
35 35 H 1.09002 * 109.56969 * 62.33271 * 9 8 7
36 36 H 1.00902 * 111.00100 * 321.49232 * 12 10 9
37 37 H 1.09000 * 109.47492 * 300.00713 * 13 12 10
38 38 H 1.09006 * 109.47073 * 59.99673 * 13 12 10
39 39 H 1.08998 * 109.46749 * 300.00878 * 14 13 12
40 40 H 1.08996 * 109.46732 * 60.00092 * 14 13 12
41 41 H 0.96996 * 119.99758 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2491
5 1 3.1276 -0.6587 1.2885
6 6 1.4443 -0.0656 2.4976
7 8 1.8758 -0.7768 3.6596
8 6 1.4652 -2.1451 3.6923
9 6 2.0618 -2.8844 2.4917
10 6 1.6134 -2.1917 1.2012
11 1 0.5289 -2.2540 1.1119
12 7 2.2419 -2.8483 0.0472
13 6 1.4560 -4.0098 -0.3901
14 6 2.1400 -4.6656 -1.5914
15 6 1.3334 -5.8566 -2.0404
16 1 0.4235 -6.1193 -1.5212
17 6 1.7563 -6.6103 -3.1147
18 7 2.8640 -6.2901 -3.7472
19 14 0.7568 -8.0871 -3.6708
20 1 -0.4362 -8.2342 -2.7988
21 1 0.3216 -7.8893 -5.0767
22 1 1.5907 -9.3124 -3.5785
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 3.1254 1.4441 0.1003
28 1 1.7609 1.9265 -0.9359
29 1 1.5971 1.9844 0.8357
30 1 1.7795 0.9696 2.5597
31 1 0.3562 -0.0926 2.4383
32 1 0.3774 -2.1993 3.6486
33 1 1.8154 -2.6079 4.6149
34 1 1.7141 -3.9174 2.4905
35 1 3.1498 -2.8664 2.5558
36 1 3.1930 -3.1132 0.2556
37 1 1.3856 -4.7291 0.4258
38 1 0.4552 -3.6848 -0.6751
39 1 2.2099 -3.9460 -2.4071
40 1 3.1407 -4.9905 -1.3068
41 1 3.1617 -6.8205 -4.5027
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000926131780.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:39:57
Heat of formation + Delta-G solvation = -75.771360 kcal
Electronic energy + Delta-G solvation = -18218.311282 eV
Core-core repulsion = 15517.918764 eV
Total energy + Delta-G solvation = -2700.392518 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.93072 -36.40546 -35.41269 -33.15963 -31.34973 -29.68082 -28.27897 -27.15744
-24.80352 -23.98650 -22.86665 -20.88793 -20.55267 -18.94391 -16.47191 -16.30502
-16.07440 -15.05992 -14.76420 -14.51746 -14.42029 -14.01586 -13.81545 -13.26789
-13.04940 -12.71155 -12.52848 -12.07475 -12.03950 -11.86940 -11.37970 -11.21073
-10.96585 -10.96511 -10.81990 -10.56711 -10.53143 -10.38874 -10.06390 -9.96796
-9.54265 -9.28121 -9.09013 -8.36506 -7.75579 -6.00807 -4.03329 3.30140
3.37595 3.41371 3.86774 4.41464 4.62306 4.74837 4.87031 4.95259
5.14087 5.14733 5.28554 5.31653 5.35319 5.41634 5.55035 5.62264
5.69504 5.72595 5.79081 5.91953 5.94256 5.98040 6.07505 6.11690
6.25144 6.30358 6.37218 6.44943 6.54877 6.67356 6.97258 7.19286
7.49588 7.72822 7.82325 7.95794 8.07996 8.42884 9.04275 9.60611
11.10658
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.030502 B = 0.005071 C = 0.004663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 917.763610 B = 5520.248832 C = 6003.191161
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.084 4.084
3 C -0.148 4.148
4 C -0.102 4.102
5 H 0.076 0.924
6 C 0.061 3.939
7 O -0.387 6.387
8 C 0.066 3.934
9 C -0.187 4.187
10 C 0.088 3.912
11 H 0.076 0.924
12 N -0.681 5.681
13 C 0.067 3.933
14 C 0.025 3.975
15 C -0.521 4.521
16 H 0.054 0.946
17 C 0.058 3.942
18 N -0.893 5.893
19 Si 0.892 3.108
20 H -0.273 1.273
21 H -0.283 1.283
22 H -0.284 1.284
23 H 0.051 0.949
24 H 0.058 0.942
25 H 0.048 0.952
26 H 0.093 0.907
27 H 0.053 0.947
28 H 0.052 0.948
29 H 0.048 0.952
30 H 0.092 0.908
31 H 0.052 0.948
32 H 0.047 0.953
33 H 0.089 0.911
34 H 0.073 0.927
35 H 0.071 0.929
36 H 0.336 0.664
37 H 0.014 0.986
38 H 0.056 0.944
39 H 0.025 0.975
40 H 0.013 0.987
41 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.901 12.542 11.974 17.581
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.103 4.103
3 C -0.206 4.206
4 C -0.121 4.121
5 H 0.094 0.906
6 C -0.016 4.016
7 O -0.306 6.306
8 C -0.012 4.012
9 C -0.227 4.227
10 C -0.022 4.022
11 H 0.095 0.905
12 N -0.310 5.310
13 C -0.061 4.061
14 C -0.012 4.012
15 C -0.560 4.560
16 H 0.072 0.928
17 C -0.143 4.143
18 N -0.532 5.532
19 Si 0.719 3.281
20 H -0.198 1.198
21 H -0.210 1.210
22 H -0.210 1.210
23 H 0.070 0.930
24 H 0.077 0.923
25 H 0.067 0.933
26 H 0.111 0.889
27 H 0.072 0.928
28 H 0.071 0.929
29 H 0.067 0.933
30 H 0.110 0.890
31 H 0.070 0.930
32 H 0.066 0.934
33 H 0.107 0.893
34 H 0.091 0.909
35 H 0.090 0.910
36 H 0.154 0.846
37 H 0.032 0.968
38 H 0.074 0.926
39 H 0.043 0.957
40 H 0.031 0.969
41 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -2.974 12.990 11.489 17.595
hybrid contribution -0.416 -1.749 0.079 1.800
sum -3.391 11.240 11.567 16.482
Atomic orbital electron populations
1.21934 0.95948 1.01872 1.00921 1.20978 0.95273 0.95033 0.98994
1.21905 1.00915 0.96573 1.01177 1.21775 1.01048 0.94712 0.94606
0.90589 1.22830 0.98373 0.95798 0.84586 1.87889 1.77826 1.22756
1.42097 1.22494 0.98159 0.82123 0.98385 1.22983 1.02089 1.00661
0.96931 1.21667 0.99163 0.93129 0.88274 0.90541 1.60649 1.05812
1.30817 1.33705 1.22161 0.97092 0.88812 0.98007 1.19060 0.95412
0.94781 0.91940 1.21211 1.08803 1.11786 1.14172 0.92792 1.25001
0.95118 0.97741 0.96487 1.69982 1.22184 1.39656 1.21411 0.86545
0.80216 0.82722 0.78568 1.19797 1.20958 1.21030 0.92955 0.92346
0.93283 0.88856 0.92793 0.92894 0.93252 0.89025 0.92974 0.93429
0.89292 0.90860 0.91035 0.84602 0.96791 0.92555 0.95688 0.96888
0.93048
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.75 8.47 37.16 0.31 -1.44 16
2 C -0.08 -1.04 2.63 -90.62 -0.24 -1.28 16
3 C -0.15 -1.55 8.79 37.16 0.33 -1.22 16
4 C -0.10 -1.28 1.87 -90.48 -0.17 -1.45 16
5 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
6 C 0.06 0.70 5.42 37.20 0.20 0.90 16
7 O -0.39 -5.01 10.76 -35.23 -0.38 -5.39 16
8 C 0.07 0.76 6.84 37.21 0.25 1.02 16
9 C -0.19 -2.43 5.40 -26.59 -0.14 -2.58 16
10 C 0.09 1.25 1.76 -67.53 -0.12 1.13 16
11 H 0.08 1.13 6.07 -51.93 -0.32 0.81 16
12 N -0.68 -11.69 5.58 -106.53 -0.59 -12.28 16
13 C 0.07 1.39 5.43 -3.82 -0.02 1.37 16
14 C 0.03 0.66 5.23 -27.89 -0.15 0.51 16
15 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16
16 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16
17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16
18 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16
19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16
20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16
21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
24 H 0.06 0.76 6.47 -51.93 -0.34 0.43 16
25 H 0.05 0.50 6.30 -51.93 -0.33 0.17 16
26 H 0.09 1.40 7.60 -51.93 -0.39 1.01 16
27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16
28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
29 H 0.05 0.45 6.89 -51.93 -0.36 0.10 16
30 H 0.09 0.94 6.80 -51.93 -0.35 0.59 16
31 H 0.05 0.57 6.22 -51.93 -0.32 0.24 16
32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
34 H 0.07 0.99 7.57 -51.93 -0.39 0.59 16
35 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16
36 H 0.34 5.75 8.44 -39.29 -0.33 5.42 16
37 H 0.01 0.28 7.54 -51.93 -0.39 -0.11 16
38 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16
39 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16
40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
LS Contribution 314.13 15.07 4.73 4.73
Total: -1.00 -29.61 314.13 -7.96 -37.57
By element:
Atomic # 1 Polarization: 8.78 SS G_CDS: -7.29 Total: 1.49 kcal
Atomic # 6 Polarization: -16.40 SS G_CDS: -0.15 Total: -16.55 kcal
Atomic # 7 Polarization: -38.66 SS G_CDS: 0.14 Total: -38.51 kcal
Atomic # 8 Polarization: -5.01 SS G_CDS: -0.38 Total: -5.39 kcal
Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -29.61 -7.96 -37.57 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000926131780.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.206 kcal
(2) G-P(sol) polarization free energy of solvation -29.605 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.812 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds