Wall clock time and date at job start Mon Mar 30 2020 04:39:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53000 * 109.47598 * 2 1
4 4 C 1.52997 * 109.47327 * 120.00456 * 2 1 3
5 5 H 1.09005 * 109.57344 * 184.12901 * 4 2 1
6 6 C 1.53090 * 109.52199 * 304.28544 * 4 2 1
7 7 O 1.42901 * 109.41594 * 177.51120 * 6 4 2
8 8 C 1.42898 * 114.10304 * 298.84758 * 7 6 4
9 9 C 1.53099 * 109.41646 * 61.15201 * 8 7 6
10 10 C 1.53174 * 109.16282 * 302.39665 * 9 8 7
11 11 H 1.08995 * 109.54299 * 297.11141 * 10 9 8
12 12 N 1.46897 * 109.54258 * 176.84248 * 10 9 8
13 13 C 1.46899 * 111.00047 * 85.44116 * 12 10 9
14 14 C 1.53002 * 109.47683 * 179.97438 * 13 12 10
15 15 C 1.50692 * 109.47436 * 180.02562 * 14 13 12
16 16 H 1.08005 * 119.99875 * 0.02562 * 15 14 13
17 17 C 1.37882 * 120.00160 * 179.97438 * 15 14 13
18 18 N 1.31513 * 119.99767 * 0.02562 * 17 15 14
19 19 Si 1.86795 * 120.00170 * 179.97438 * 17 15 14
20 20 H 1.48504 * 109.46941 * 359.97438 * 19 17 15
21 21 H 1.48495 * 109.47308 * 120.00020 * 19 17 15
22 22 H 1.48498 * 109.47123 * 240.00401 * 19 17 15
23 23 H 1.08991 * 109.47203 * 59.99622 * 1 2 3
24 24 H 1.08993 * 109.47246 * 180.02562 * 1 2 3
25 25 H 1.09003 * 109.46818 * 299.99704 * 1 2 3
26 26 H 1.09003 * 109.46818 * 240.00296 * 2 1 3
27 27 H 1.08991 * 109.47606 * 174.39995 * 3 2 1
28 28 H 1.09000 * 109.46989 * 294.40364 * 3 2 1
29 29 H 1.09006 * 109.46345 * 54.39940 * 3 2 1
30 30 H 1.08993 * 109.48525 * 297.49858 * 6 4 2
31 31 H 1.09000 * 109.47820 * 57.53398 * 6 4 2
32 32 H 1.09000 * 109.47921 * 301.17243 * 8 7 6
33 33 H 1.09000 * 109.49359 * 181.14370 * 8 7 6
34 34 H 1.08994 * 109.52289 * 182.48652 * 9 8 7
35 35 H 1.09002 * 109.56969 * 62.33271 * 9 8 7
36 36 H 1.00902 * 111.00100 * 321.49232 * 12 10 9
37 37 H 1.09000 * 109.47492 * 300.00713 * 13 12 10
38 38 H 1.09006 * 109.47073 * 59.99673 * 13 12 10
39 39 H 1.08998 * 109.46749 * 300.00878 * 14 13 12
40 40 H 1.08996 * 109.46732 * 60.00092 * 14 13 12
41 41 H 0.96996 * 119.99758 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2491
5 1 3.1276 -0.6587 1.2885
6 6 1.4443 -0.0656 2.4976
7 8 1.8758 -0.7768 3.6596
8 6 1.4652 -2.1451 3.6923
9 6 2.0618 -2.8844 2.4917
10 6 1.6134 -2.1917 1.2012
11 1 0.5289 -2.2540 1.1119
12 7 2.2419 -2.8483 0.0472
13 6 1.4560 -4.0098 -0.3901
14 6 2.1400 -4.6656 -1.5914
15 6 1.3334 -5.8566 -2.0404
16 1 0.4235 -6.1193 -1.5212
17 6 1.7563 -6.6103 -3.1147
18 7 2.8640 -6.2901 -3.7472
19 14 0.7568 -8.0871 -3.6708
20 1 -0.4362 -8.2342 -2.7988
21 1 0.3216 -7.8893 -5.0767
22 1 1.5907 -9.3124 -3.5785
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 3.1254 1.4441 0.1003
28 1 1.7609 1.9265 -0.9359
29 1 1.5971 1.9844 0.8357
30 1 1.7795 0.9696 2.5597
31 1 0.3562 -0.0926 2.4383
32 1 0.3774 -2.1993 3.6486
33 1 1.8154 -2.6079 4.6149
34 1 1.7141 -3.9174 2.4905
35 1 3.1498 -2.8664 2.5558
36 1 3.1930 -3.1132 0.2556
37 1 1.3856 -4.7291 0.4258
38 1 0.4552 -3.6848 -0.6751
39 1 2.2099 -3.9460 -2.4071
40 1 3.1407 -4.9905 -1.3068
41 1 3.1617 -6.8205 -4.5027
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000926131780.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:39:56
Heat of formation + Delta-G solvation = -94.653162 kcal
Electronic energy + Delta-G solvation = -18219.130059 eV
Core-core repulsion = 15517.918764 eV
Total energy + Delta-G solvation = -2701.211295 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.97433 -37.59551 -36.67309 -35.10669 -32.90207 -30.80851 -29.85370 -28.05991
-26.46040 -25.11098 -24.18887 -22.48631 -21.86218 -20.00215 -18.54063 -17.34723
-17.18135 -16.52514 -16.30177 -15.94693 -15.51120 -15.22981 -14.92045 -14.70592
-14.37387 -14.11064 -13.70590 -13.53828 -13.27320 -12.99753 -12.87926 -12.77358
-12.44721 -12.37508 -12.18503 -11.91187 -11.80916 -11.53037 -11.46685 -11.31748
-11.27031 -10.95689 -10.58598 -10.37700 -9.17678 -8.21739 -6.33245 1.39274
1.39611 1.52859 2.39244 2.95221 3.11911 3.30661 3.68815 3.85103
3.96003 4.09458 4.20803 4.29902 4.37053 4.41606 4.51572 4.53701
4.64511 4.64580 4.74068 4.85843 4.86206 4.94347 4.97747 5.05633
5.08251 5.11798 5.18001 5.23208 5.40474 5.44052 5.56884 5.64879
5.67438 5.79065 6.14695 6.26595 6.29920 6.53338 6.84532 7.36293
8.90664
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.030502 B = 0.005071 C = 0.004663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 917.763610 B = 5520.248832 C = 6003.191161
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.083 4.083
3 C -0.144 4.144
4 C -0.095 4.095
5 H 0.066 0.934
6 C 0.064 3.936
7 O -0.398 6.398
8 C 0.067 3.933
9 C -0.183 4.183
10 C 0.088 3.912
11 H 0.074 0.926
12 N -0.684 5.684
13 C 0.089 3.911
14 C 0.033 3.967
15 C -0.543 4.543
16 H 0.059 0.941
17 C 0.001 3.999
18 N -0.932 5.932
19 Si 0.966 3.034
20 H -0.262 1.262
21 H -0.278 1.278
22 H -0.277 1.277
23 H 0.054 0.946
24 H 0.040 0.960
25 H 0.070 0.930
26 H 0.059 0.941
27 H 0.052 0.948
28 H 0.055 0.945
29 H 0.068 0.932
30 H 0.109 0.891
31 H 0.062 0.938
32 H 0.058 0.942
33 H 0.106 0.894
34 H 0.067 0.933
35 H 0.067 0.933
36 H 0.336 0.664
37 H 0.017 0.983
38 H 0.054 0.946
39 H -0.007 1.007
40 H -0.011 1.011
41 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.189 12.949 13.250 18.994
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.102 4.102
3 C -0.201 4.201
4 C -0.115 4.115
5 H 0.084 0.916
6 C -0.013 4.013
7 O -0.317 6.317
8 C -0.010 4.010
9 C -0.223 4.223
10 C -0.022 4.022
11 H 0.092 0.908
12 N -0.313 5.313
13 C -0.040 4.040
14 C -0.004 4.004
15 C -0.582 4.582
16 H 0.078 0.922
17 C -0.197 4.197
18 N -0.572 5.572
19 Si 0.791 3.209
20 H -0.186 1.186
21 H -0.203 1.203
22 H -0.203 1.203
23 H 0.073 0.927
24 H 0.059 0.941
25 H 0.088 0.912
26 H 0.078 0.922
27 H 0.071 0.929
28 H 0.074 0.926
29 H 0.087 0.913
30 H 0.127 0.873
31 H 0.081 0.919
32 H 0.076 0.924
33 H 0.124 0.876
34 H 0.086 0.914
35 H 0.085 0.915
36 H 0.153 0.847
37 H 0.035 0.965
38 H 0.072 0.928
39 H 0.011 0.989
40 H 0.008 0.992
41 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -4.267 13.413 12.783 19.013
hybrid contribution 0.024 -1.838 -0.326 1.867
sum -4.243 11.574 12.457 17.526
Atomic orbital electron populations
1.21908 0.95258 1.01087 1.02115 1.20910 0.95835 0.96048 0.97412
1.21862 1.00909 0.95162 1.02180 1.21708 1.00526 0.93557 0.95660
0.91562 1.22898 0.98875 0.96275 0.83249 1.87884 1.78150 1.23224
1.42477 1.22570 0.98723 0.81520 0.98182 1.22919 1.01890 1.00439
0.97016 1.21741 0.98765 0.94073 0.87609 0.90790 1.60562 1.05562
1.29218 1.35950 1.21734 0.96560 0.89720 0.95953 1.18902 0.94578
0.93945 0.93014 1.21637 1.09254 1.12649 1.14636 0.92239 1.25972
0.96222 1.01010 0.96500 1.70115 1.23940 1.41174 1.21995 0.85379
0.78792 0.78529 0.78217 1.18555 1.20327 1.20313 0.92695 0.94078
0.91164 0.92210 0.92921 0.92621 0.91331 0.87319 0.91941 0.92367
0.87603 0.91416 0.91474 0.84660 0.96457 0.92761 0.98866 0.99246
0.92748
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.25 8.47 71.98 0.61 -2.64 16
2 C -0.08 -2.00 2.63 -10.79 -0.03 -2.03 16
3 C -0.14 -2.76 8.79 71.98 0.63 -2.13 16
4 C -0.10 -2.29 1.87 -10.70 -0.02 -2.31 16
5 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16
6 C 0.06 1.29 5.42 72.01 0.39 1.68 16
7 O -0.40 -9.30 10.76 -148.98 -1.60 -10.91 16
8 C 0.07 1.41 6.84 72.02 0.49 1.90 16
9 C -0.18 -4.57 5.40 30.69 0.17 -4.40 16
10 C 0.09 2.45 1.76 45.03 0.08 2.53 16
11 H 0.07 2.12 6.07 -2.39 -0.01 2.10 16
12 N -0.68 -24.01 5.58 -490.96 -2.74 -26.75 16
13 C 0.09 3.75 5.43 86.30 0.47 4.22 16
14 C 0.03 1.78 5.23 29.85 0.16 1.94 16
15 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16
16 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16
17 C 0.00 0.05 5.46 84.66 0.46 0.51 16
18 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16
19 Si 0.97 44.48 29.54 68.60 2.03 46.51 16
20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16
21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16
23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16
24 H 0.04 1.04 6.47 -2.39 -0.02 1.03 16
25 H 0.07 1.24 6.30 -2.39 -0.02 1.23 16
26 H 0.06 1.84 7.60 -2.39 -0.02 1.83 16
27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16
28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
29 H 0.07 1.06 6.89 -2.38 -0.02 1.04 16
30 H 0.11 1.86 6.80 -2.39 -0.02 1.84 16
31 H 0.06 1.16 6.22 -2.39 -0.01 1.15 16
32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16
34 H 0.07 1.76 7.57 -2.39 -0.02 1.74 16
35 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16
36 H 0.34 11.84 8.44 -89.69 -0.76 11.08 16
37 H 0.02 0.71 7.54 -2.39 -0.02 0.69 16
38 H 0.05 2.29 8.06 -2.38 -0.02 2.27 16
39 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16
40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16
41 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16
Total: -1.00 -63.93 314.13 1.84 -62.09
By element:
Atomic # 1 Polarization: 17.69 SS G_CDS: 0.23 Total: 17.93 kcal
Atomic # 6 Polarization: -35.40 SS G_CDS: 3.64 Total: -31.76 kcal
Atomic # 7 Polarization: -81.41 SS G_CDS: -2.45 Total: -83.86 kcal
Atomic # 8 Polarization: -9.30 SS G_CDS: -1.60 Total: -10.91 kcal
Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal
Total: -63.93 1.84 -62.09 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000926131780.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.562 kcal
(2) G-P(sol) polarization free energy of solvation -63.932 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.494 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds