Wall clock time and date at job start Mon Mar 30 2020 04:40:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52997 * 109.47060 * 2 1
4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3
5 5 H 1.09000 * 109.52331 * 59.99121 * 4 2 1
6 6 C 1.53086 * 109.52564 * 180.12300 * 4 2 1
7 7 O 1.42899 * 109.41768 * 177.51322 * 6 4 2
8 8 C 1.42899 * 114.09628 * 298.84192 * 7 6 4
9 9 C 1.53095 * 109.41772 * 61.15689 * 8 7 6
10 10 C 1.53181 * 109.51737 * 299.87432 * 4 2 1
11 11 H 1.08992 * 109.54942 * 63.24680 * 10 4 2
12 12 N 1.46900 * 109.54098 * 302.97520 * 10 4 2
13 13 C 1.46904 * 110.99862 * 155.00420 * 12 10 4
14 14 C 1.53001 * 109.47156 * 179.97438 * 13 12 10
15 15 C 1.50702 * 109.46922 * 179.97438 * 14 13 12
16 16 H 1.08005 * 120.00065 * 0.02562 * 15 14 13
17 17 C 1.37880 * 119.99750 * 180.02562 * 15 14 13
18 18 N 1.31518 * 119.99468 * 180.02562 * 17 15 14
19 19 Si 1.86790 * 120.00013 * 0.02562 * 17 15 14
20 20 H 1.48502 * 109.47120 * 89.99991 * 19 17 15
21 21 H 1.48497 * 109.47167 * 209.99589 * 19 17 15
22 22 H 1.48493 * 109.47709 * 330.00185 * 19 17 15
23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3
24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3
25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3
26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3
27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1
28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1
29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1
30 30 H 1.09001 * 109.47978 * 297.50018 * 6 4 2
31 31 H 1.09004 * 109.47819 * 57.51681 * 6 4 2
32 32 H 1.09004 * 109.48379 * 181.14238 * 8 7 6
33 33 H 1.09001 * 109.48485 * 301.17614 * 8 7 6
34 34 H 1.09001 * 109.52101 * 62.29414 * 9 8 7
35 35 H 1.08999 * 109.52155 * 182.42234 * 9 8 7
36 36 H 1.00905 * 111.00346 * 278.95681 * 12 10 4
37 37 H 1.08999 * 109.47242 * 300.00231 * 13 12 10
38 38 H 1.09006 * 109.46634 * 60.00166 * 13 12 10
39 39 H 1.08999 * 109.47287 * 300.00269 * 14 13 12
40 40 H 1.09003 * 109.46660 * 60.00562 * 14 13 12
41 41 H 0.97003 * 119.99147 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 1 1.6771 -0.2080 -2.1398
6 6 3.5709 -0.7246 -1.2490
7 8 4.0446 -1.4486 -2.3863
8 6 3.6420 -2.8194 -2.4143
9 6 2.1140 -2.9003 -2.4614
10 6 1.5326 -2.1665 -1.2489
11 1 0.4442 -2.1709 -1.3062
12 7 1.9643 -2.8385 -0.0160
13 6 1.0656 -3.9510 0.3196
14 6 1.5468 -4.6251 1.6061
15 6 0.6244 -5.7660 1.9507
16 1 -0.2203 -5.9883 1.3154
17 6 0.8588 -6.5259 3.0770
18 7 0.0541 -7.5219 3.3773
19 14 2.3193 -6.1410 4.1760
20 1 1.9098 -5.1682 5.2207
21 1 2.7952 -7.3903 4.8224
22 1 3.4138 -5.5583 3.3590
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8899
25 1 -0.3633 -1.0277 0.0005
26 1 1.8934 -0.5139 0.8900
27 1 1.6766 1.9563 -0.8900
28 1 1.6767 1.9564 0.8899
29 1 3.1299 1.4426 -0.0005
30 1 3.9367 0.3013 -1.2929
31 1 3.9331 -1.2009 -0.3379
32 1 4.0591 -3.3028 -3.2978
33 1 4.0052 -3.3234 -1.5186
34 1 1.7525 -2.4321 -3.3770
35 1 1.8036 -3.9450 -2.4394
36 1 2.9193 -3.1555 -0.0922
37 1 0.0546 -3.5703 0.4647
38 1 1.0672 -4.6772 -0.4933
39 1 2.5577 -5.0059 1.4606
40 1 1.5454 -3.8990 2.4191
41 1 0.2189 -8.0563 4.1699
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000926131783.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:04
Heat of formation + Delta-G solvation = -71.166652 kcal
Electronic energy + Delta-G solvation = -18473.856249 eV
Core-core repulsion = 15773.663406 eV
Total energy + Delta-G solvation = -2700.192843 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.07625 -36.30621 -35.41014 -33.11879 -31.46347 -29.95599 -28.62790 -27.33024
-24.50545 -23.90219 -23.52900 -20.49279 -20.25842 -19.05939 -16.80771 -16.47200
-16.14502 -15.39024 -14.73701 -14.54211 -14.29626 -14.02336 -13.68702 -13.38409
-13.22276 -12.57180 -12.49517 -12.15882 -12.10223 -12.06602 -11.47312 -11.37587
-11.20845 -11.12788 -10.99538 -10.46933 -10.44776 -10.23416 -10.10654 -9.80197
-9.64311 -9.28379 -9.24175 -8.55142 -7.92769 -6.05951 -4.04309 3.31305
3.38354 3.42586 3.88806 4.44647 4.53241 4.72782 4.85980 4.91173
5.02504 5.13478 5.22675 5.28758 5.29142 5.44465 5.50224 5.66442
5.68353 5.76247 5.86538 5.88690 5.92665 5.99537 6.02705 6.03948
6.15870 6.22228 6.23185 6.35221 6.49071 6.65581 6.76049 7.11918
7.21616 7.36430 7.58189 7.72749 7.87761 8.51502 8.98154 9.56544
11.07430
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.025009 B = 0.006071 C = 0.005649
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1119.310416 B = 4611.326201 C = 4955.756107
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.083 4.083
3 C -0.151 4.151
4 C -0.101 4.101
5 H 0.071 0.929
6 C 0.062 3.938
7 O -0.387 6.387
8 C 0.061 3.939
9 C -0.188 4.188
10 C 0.086 3.914
11 H 0.083 0.917
12 N -0.685 5.685
13 C 0.074 3.926
14 C -0.009 4.009
15 C -0.521 4.521
16 H 0.070 0.930
17 C 0.067 3.933
18 N -0.904 5.904
19 Si 0.883 3.117
20 H -0.277 1.277
21 H -0.289 1.289
22 H -0.266 1.266
23 H 0.050 0.950
24 H 0.044 0.956
25 H 0.061 0.939
26 H 0.090 0.910
27 H 0.049 0.951
28 H 0.052 0.948
29 H 0.052 0.948
30 H 0.090 0.910
31 H 0.058 0.942
32 H 0.091 0.909
33 H 0.051 0.949
34 H 0.071 0.929
35 H 0.075 0.925
36 H 0.332 0.668
37 H 0.064 0.936
38 H 0.021 0.979
39 H 0.011 0.989
40 H 0.020 0.980
41 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.583 14.992 -10.094 18.916
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.101 4.101
3 C -0.208 4.208
4 C -0.120 4.120
5 H 0.090 0.910
6 C -0.014 4.014
7 O -0.306 6.306
8 C -0.016 4.016
9 C -0.227 4.227
10 C -0.024 4.024
11 H 0.101 0.899
12 N -0.316 5.316
13 C -0.054 4.054
14 C -0.047 4.047
15 C -0.560 4.560
16 H 0.088 0.912
17 C -0.134 4.134
18 N -0.543 5.543
19 Si 0.710 3.290
20 H -0.203 1.203
21 H -0.215 1.215
22 H -0.190 1.190
23 H 0.069 0.931
24 H 0.063 0.937
25 H 0.080 0.920
26 H 0.108 0.892
27 H 0.068 0.932
28 H 0.071 0.929
29 H 0.071 0.929
30 H 0.108 0.892
31 H 0.076 0.924
32 H 0.109 0.891
33 H 0.069 0.931
34 H 0.090 0.910
35 H 0.093 0.907
36 H 0.151 0.849
37 H 0.082 0.918
38 H 0.039 0.961
39 H 0.030 0.970
40 H 0.039 0.961
41 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 5.337 15.373 -9.679 18.934
hybrid contribution 0.666 -0.812 0.158 1.062
sum 6.002 14.560 -9.521 18.403
Atomic orbital electron populations
1.21808 0.95468 1.02081 1.00717 1.20960 0.95710 0.94658 0.98786
1.21941 1.00734 0.96783 1.01322 1.21778 0.95991 0.95629 0.98637
0.91029 1.22720 0.93468 0.96499 0.88719 1.87889 1.74666 1.22435
1.45572 1.22529 0.94057 0.83195 1.01857 1.22854 0.97066 1.02211
1.00579 1.21648 0.99868 0.93025 0.87884 0.89921 1.60755 1.06454
1.31662 1.32760 1.21972 0.95799 0.89669 0.97936 1.19535 0.96545
0.95578 0.93032 1.21068 1.12237 1.12802 1.09844 0.91164 1.25009
0.96276 0.94701 0.97436 1.69921 1.37916 1.19636 1.26800 0.86734
0.83615 0.77657 0.80984 1.20260 1.21511 1.19042 0.93078 0.93657
0.92033 0.89168 0.93197 0.92887 0.92854 0.89216 0.92409 0.89127
0.93054 0.91023 0.90674 0.84867 0.91783 0.96067 0.97039 0.96133
0.92732
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.70 8.85 37.16 0.33 -1.37 16
2 C -0.08 -0.97 2.32 -90.62 -0.21 -1.18 16
3 C -0.15 -1.49 8.84 37.16 0.33 -1.16 16
4 C -0.10 -1.20 1.80 -90.48 -0.16 -1.36 16
5 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
6 C 0.06 0.75 5.46 37.20 0.20 0.95 16
7 O -0.39 -5.12 10.77 -35.23 -0.38 -5.50 16
8 C 0.06 0.74 6.58 37.21 0.24 0.98 16
9 C -0.19 -2.33 5.71 -26.58 -0.15 -2.48 16
10 C 0.09 1.16 1.92 -67.52 -0.13 1.03 16
11 H 0.08 1.16 6.29 -51.93 -0.33 0.83 16
12 N -0.68 -10.83 4.98 -106.52 -0.53 -11.36 16
13 C 0.07 1.44 5.43 -3.82 -0.02 1.42 16
14 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16
15 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16
16 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16
17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16
18 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16
19 Si 0.88 21.88 27.47 -169.99 -4.67 17.22 16
20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
22 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16
23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
24 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16
25 H 0.06 0.82 6.51 -51.93 -0.34 0.48 16
26 H 0.09 1.25 7.53 -51.93 -0.39 0.86 16
27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.05 0.49 6.49 -51.93 -0.34 0.16 16
30 H 0.09 0.95 6.58 -51.93 -0.34 0.61 16
31 H 0.06 0.73 7.39 -51.93 -0.38 0.34 16
32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16
33 H 0.05 0.65 6.43 -51.93 -0.33 0.31 16
34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
35 H 0.07 0.98 7.44 -51.93 -0.39 0.59 16
36 H 0.33 5.19 5.83 -39.29 -0.23 4.96 16
37 H 0.06 1.28 8.06 -51.93 -0.42 0.86 16
38 H 0.02 0.42 7.43 -51.93 -0.39 0.03 16
39 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16
40 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16
41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
LS Contribution 308.30 15.07 4.65 4.65
Total: -1.00 -29.81 308.30 -7.46 -37.27
By element:
Atomic # 1 Polarization: 8.86 SS G_CDS: -7.18 Total: 1.68 kcal
Atomic # 6 Polarization: -16.68 SS G_CDS: -0.12 Total: -16.80 kcal
Atomic # 7 Polarization: -38.76 SS G_CDS: 0.24 Total: -38.51 kcal
Atomic # 8 Polarization: -5.12 SS G_CDS: -0.38 Total: -5.50 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.22 kcal
Total LS contribution 4.65 Total: 4.65 kcal
Total: -29.81 -7.46 -37.27 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000926131783.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.895 kcal
(2) G-P(sol) polarization free energy of solvation -29.809 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.704 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds