Wall clock time and date at job start Mon Mar 30 2020 04:40:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52997 * 109.47060 * 2 1
4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3
5 5 H 1.09000 * 109.52331 * 59.99121 * 4 2 1
6 6 C 1.53086 * 109.52564 * 180.12300 * 4 2 1
7 7 O 1.42899 * 109.41768 * 177.51322 * 6 4 2
8 8 C 1.42899 * 114.09628 * 298.84192 * 7 6 4
9 9 C 1.53095 * 109.41772 * 61.15689 * 8 7 6
10 10 C 1.53181 * 109.51737 * 299.87432 * 4 2 1
11 11 H 1.08992 * 109.54942 * 63.24680 * 10 4 2
12 12 N 1.46900 * 109.54098 * 302.97520 * 10 4 2
13 13 C 1.46904 * 110.99862 * 155.00420 * 12 10 4
14 14 C 1.53001 * 109.47156 * 179.97438 * 13 12 10
15 15 C 1.50702 * 109.46922 * 179.97438 * 14 13 12
16 16 H 1.08005 * 120.00065 * 0.02562 * 15 14 13
17 17 C 1.37880 * 119.99750 * 180.02562 * 15 14 13
18 18 N 1.31518 * 119.99468 * 180.02562 * 17 15 14
19 19 Si 1.86790 * 120.00013 * 0.02562 * 17 15 14
20 20 H 1.48502 * 109.47120 * 89.99991 * 19 17 15
21 21 H 1.48497 * 109.47167 * 209.99589 * 19 17 15
22 22 H 1.48493 * 109.47709 * 330.00185 * 19 17 15
23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3
24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3
25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3
26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3
27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1
28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1
29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1
30 30 H 1.09001 * 109.47978 * 297.50018 * 6 4 2
31 31 H 1.09004 * 109.47819 * 57.51681 * 6 4 2
32 32 H 1.09004 * 109.48379 * 181.14238 * 8 7 6
33 33 H 1.09001 * 109.48485 * 301.17614 * 8 7 6
34 34 H 1.09001 * 109.52101 * 62.29414 * 9 8 7
35 35 H 1.08999 * 109.52155 * 182.42234 * 9 8 7
36 36 H 1.00905 * 111.00346 * 278.95681 * 12 10 4
37 37 H 1.08999 * 109.47242 * 300.00231 * 13 12 10
38 38 H 1.09006 * 109.46634 * 60.00166 * 13 12 10
39 39 H 1.08999 * 109.47287 * 300.00269 * 14 13 12
40 40 H 1.09003 * 109.46660 * 60.00562 * 14 13 12
41 41 H 0.97003 * 119.99147 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 1 1.6771 -0.2080 -2.1398
6 6 3.5709 -0.7246 -1.2490
7 8 4.0446 -1.4486 -2.3863
8 6 3.6420 -2.8194 -2.4143
9 6 2.1140 -2.9003 -2.4614
10 6 1.5326 -2.1665 -1.2489
11 1 0.4442 -2.1709 -1.3062
12 7 1.9643 -2.8385 -0.0160
13 6 1.0656 -3.9510 0.3196
14 6 1.5468 -4.6251 1.6061
15 6 0.6244 -5.7660 1.9507
16 1 -0.2203 -5.9883 1.3154
17 6 0.8588 -6.5259 3.0770
18 7 0.0541 -7.5219 3.3773
19 14 2.3193 -6.1410 4.1760
20 1 1.9098 -5.1682 5.2207
21 1 2.7952 -7.3903 4.8224
22 1 3.4138 -5.5583 3.3590
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8899
25 1 -0.3633 -1.0277 0.0005
26 1 1.8934 -0.5139 0.8900
27 1 1.6766 1.9563 -0.8900
28 1 1.6767 1.9564 0.8899
29 1 3.1299 1.4426 -0.0005
30 1 3.9367 0.3013 -1.2929
31 1 3.9331 -1.2009 -0.3379
32 1 4.0591 -3.3028 -3.2978
33 1 4.0052 -3.3234 -1.5186
34 1 1.7525 -2.4321 -3.3770
35 1 1.8036 -3.9450 -2.4394
36 1 2.9193 -3.1555 -0.0922
37 1 0.0546 -3.5703 0.4647
38 1 1.0672 -4.6772 -0.4933
39 1 2.5577 -5.0059 1.4606
40 1 1.5454 -3.8990 2.4191
41 1 0.2189 -8.0563 4.1699
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000926131783.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:04
Heat of formation + Delta-G solvation = -90.328676 kcal
Electronic energy + Delta-G solvation = -18474.687177 eV
Core-core repulsion = 15773.663406 eV
Total energy + Delta-G solvation = -2701.023771 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.11140 -37.41982 -36.64522 -35.01898 -33.08300 -31.00927 -30.15509 -28.23489
-26.02389 -25.11956 -24.62445 -22.30473 -21.26182 -20.13752 -18.91556 -17.58572
-17.12222 -16.52916 -16.39682 -15.79515 -15.57490 -15.34370 -14.87502 -14.68904
-14.57921 -14.27042 -13.48068 -13.42724 -13.19408 -13.18601 -12.92923 -12.89930
-12.41302 -12.25622 -12.08988 -11.94721 -11.80431 -11.64104 -11.43555 -11.38964
-11.22710 -10.97983 -10.78001 -10.27902 -9.25300 -8.31020 -6.35365 1.36399
1.37133 1.49679 2.35387 2.95197 3.04854 3.27296 3.73011 3.85098
3.95597 3.99662 4.20595 4.28498 4.35071 4.43507 4.50190 4.53555
4.59842 4.74989 4.81240 4.86101 4.89524 4.95237 4.95941 5.02822
5.05766 5.12647 5.17900 5.20403 5.30800 5.41056 5.49348 5.56199
5.63009 5.71091 6.15064 6.24822 6.26353 6.50550 6.73467 7.29616
8.85738
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.025009 B = 0.006071 C = 0.005649
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1119.310416 B = 4611.326201 C = 4955.756107
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.080 4.080
3 C -0.146 4.146
4 C -0.093 4.093
5 H 0.081 0.919
6 C 0.062 3.938
7 O -0.396 6.396
8 C 0.060 3.940
9 C -0.183 4.183
10 C 0.084 3.916
11 H 0.075 0.925
12 N -0.679 5.679
13 C 0.091 3.909
14 C -0.002 4.002
15 C -0.533 4.533
16 H 0.031 0.969
17 C 0.006 3.994
18 N -0.951 5.951
19 Si 0.953 3.047
20 H -0.268 1.268
21 H -0.284 1.284
22 H -0.247 1.247
23 H 0.052 0.948
24 H 0.058 0.942
25 H 0.040 0.960
26 H 0.068 0.932
27 H 0.059 0.941
28 H 0.055 0.945
29 H 0.060 0.940
30 H 0.108 0.892
31 H 0.050 0.950
32 H 0.107 0.893
33 H 0.046 0.954
34 H 0.083 0.917
35 H 0.066 0.934
36 H 0.336 0.664
37 H 0.054 0.946
38 H 0.015 0.985
39 H 0.017 0.983
40 H 0.021 0.979
41 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.375 16.908 -10.508 21.229
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.099 4.099
3 C -0.203 4.203
4 C -0.112 4.112
5 H 0.099 0.901
6 C -0.014 4.014
7 O -0.315 6.315
8 C -0.017 4.017
9 C -0.223 4.223
10 C -0.026 4.026
11 H 0.093 0.907
12 N -0.310 5.310
13 C -0.038 4.038
14 C -0.040 4.040
15 C -0.571 4.571
16 H 0.049 0.951
17 C -0.191 4.191
18 N -0.592 5.592
19 Si 0.777 3.223
20 H -0.193 1.193
21 H -0.210 1.210
22 H -0.170 1.170
23 H 0.071 0.929
24 H 0.077 0.923
25 H 0.059 0.941
26 H 0.087 0.913
27 H 0.078 0.922
28 H 0.074 0.926
29 H 0.079 0.921
30 H 0.126 0.874
31 H 0.068 0.932
32 H 0.125 0.875
33 H 0.064 0.936
34 H 0.101 0.899
35 H 0.084 0.916
36 H 0.156 0.844
37 H 0.072 0.928
38 H 0.034 0.966
39 H 0.035 0.965
40 H 0.039 0.961
41 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 7.133 17.309 -10.116 21.279
hybrid contribution 0.016 -1.419 0.226 1.437
sum 7.149 15.890 -9.890 20.035
Atomic orbital electron populations
1.21787 0.95705 1.00930 1.01491 1.20907 0.95472 0.95838 0.97698
1.21894 1.01215 0.95228 1.01983 1.21719 0.96123 0.94261 0.99090
0.90051 1.22795 0.93202 0.97285 0.88129 1.87886 1.74836 1.22764
1.45966 1.22596 0.93660 0.83016 1.02445 1.22799 0.97431 1.01579
1.00447 1.21717 0.99645 0.94038 0.87184 0.90669 1.60659 1.05940
1.29822 1.34610 1.21603 0.95889 0.90408 0.95939 1.19415 0.95601
0.94079 0.94931 1.21412 1.11964 1.14370 1.09360 0.95064 1.25992
0.99556 0.94385 0.99189 1.70072 1.40240 1.21072 1.27781 0.85609
0.79973 0.77787 0.78942 1.19344 1.20999 1.17029 0.92932 0.92283
0.94109 0.91319 0.92176 0.92624 0.92061 0.87441 0.93165 0.87488
0.93581 0.89851 0.91554 0.84432 0.92795 0.96639 0.96474 0.96092
0.92467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.19 8.85 71.98 0.64 -2.55 16
2 C -0.08 -1.75 2.32 -10.79 -0.03 -1.77 16
3 C -0.15 -2.49 8.84 71.98 0.64 -1.85 16
4 C -0.09 -2.01 1.80 -10.70 -0.02 -2.03 16
5 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
6 C 0.06 1.33 5.46 72.01 0.39 1.72 16
7 O -0.40 -9.47 10.77 -148.98 -1.60 -11.07 16
8 C 0.06 1.33 6.58 72.01 0.47 1.80 16
9 C -0.18 -4.26 5.71 30.69 0.18 -4.09 16
10 C 0.08 2.15 1.92 45.04 0.09 2.24 16
11 H 0.08 2.06 6.29 -2.39 -0.02 2.04 16
12 N -0.68 -20.85 4.98 -490.92 -2.45 -23.29 16
13 C 0.09 3.53 5.43 86.30 0.47 4.00 16
14 C 0.00 -0.11 4.30 29.85 0.13 0.01 16
15 C -0.53 -30.94 9.66 25.60 0.25 -30.70 16
16 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16
17 C 0.01 0.33 5.47 84.65 0.46 0.80 16
18 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16
19 Si 0.95 44.76 27.47 68.60 1.88 46.64 16
20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16
21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16
22 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16
23 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16
24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
25 H 0.04 1.07 6.51 -2.39 -0.02 1.06 16
26 H 0.07 1.81 7.53 -2.39 -0.02 1.79 16
27 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16
28 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16
29 H 0.06 0.95 6.49 -2.39 -0.02 0.93 16
30 H 0.11 1.92 6.58 -2.39 -0.02 1.91 16
31 H 0.05 1.16 7.39 -2.38 -0.02 1.14 16
32 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16
33 H 0.05 1.08 6.43 -2.39 -0.02 1.06 16
34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16
35 H 0.07 1.67 7.44 -2.39 -0.02 1.65 16
36 H 0.34 10.03 5.83 -89.69 -0.52 9.50 16
37 H 0.05 2.20 8.06 -2.39 -0.02 2.18 16
38 H 0.02 0.61 7.43 -2.38 -0.02 0.60 16
39 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16
40 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16
41 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16
Total: -1.00 -64.14 308.30 2.21 -61.93
By element:
Atomic # 1 Polarization: 17.57 SS G_CDS: 0.41 Total: 17.98 kcal
Atomic # 6 Polarization: -36.08 SS G_CDS: 3.67 Total: -32.41 kcal
Atomic # 7 Polarization: -80.92 SS G_CDS: -2.15 Total: -83.07 kcal
Atomic # 8 Polarization: -9.47 SS G_CDS: -1.60 Total: -11.07 kcal
Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal
Total: -64.14 2.21 -61.93 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000926131783.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.398 kcal
(2) G-P(sol) polarization free energy of solvation -64.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.537 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds