Wall clock time and date at job start Mon Mar 30 2020 04:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47592 * 2 1 4 4 H 1.09009 * 109.47091 * 57.74737 * 3 2 1 5 5 C 1.50697 * 109.47371 * 177.74239 * 3 2 1 6 6 H 1.08000 * 119.99841 * 120.00179 * 5 3 2 7 7 C 1.37881 * 120.00396 * 300.00532 * 5 3 2 8 8 N 1.31507 * 120.00104 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 119.99602 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47282 * 90.00506 * 9 7 5 11 11 H 1.48505 * 109.46759 * 210.00309 * 9 7 5 12 12 H 1.48499 * 109.47443 * 329.99888 * 9 7 5 13 13 N 1.46892 * 109.47267 * 297.74605 * 3 2 1 14 14 C 1.46904 * 111.00214 * 177.78702 * 13 3 2 15 15 C 1.53005 * 109.47399 * 196.62391 * 14 13 3 16 16 O 1.42904 * 109.46656 * 57.99211 * 15 14 13 17 17 C 1.46903 * 111.00299 * 301.74701 * 13 3 2 18 18 C 1.54270 * 110.02787 * 282.41431 * 17 13 3 19 19 C 1.54895 * 104.19413 * 217.10367 * 18 17 13 20 20 C 1.54893 * 102.74704 * 37.93835 * 19 18 17 21 21 C 1.53876 * 110.03487 * 165.24485 * 17 13 3 22 22 H 1.09001 * 109.46926 * 295.15375 * 1 2 3 23 23 H 1.09004 * 109.47909 * 175.15477 * 1 2 3 24 24 H 1.09004 * 109.47382 * 55.14891 * 1 2 3 25 25 H 1.09009 * 109.47235 * 120.00337 * 2 1 3 26 26 H 1.09003 * 109.47181 * 239.99582 * 2 1 3 27 27 H 0.96999 * 120.00406 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47312 * 316.62719 * 14 13 3 29 29 H 1.09006 * 109.46482 * 76.63154 * 14 13 3 30 30 H 1.09000 * 109.47276 * 177.99358 * 15 14 13 31 31 H 1.08999 * 109.47261 * 297.99681 * 15 14 13 32 32 H 0.96700 * 113.99120 * 179.97438 * 16 15 14 33 33 H 1.09003 * 110.01383 * 43.84706 * 17 13 3 34 34 H 1.09002 * 110.48642 * 335.77359 * 18 17 13 35 35 H 1.08994 * 110.48656 * 98.42276 * 18 17 13 36 36 H 1.09004 * 110.74952 * 279.62915 * 19 18 17 37 37 H 1.08990 * 110.91668 * 156.33153 * 19 18 17 38 38 H 1.08996 * 110.48671 * 203.38074 * 20 19 18 39 39 H 1.08998 * 110.48387 * 80.74177 * 20 19 18 40 40 H 1.09000 * 110.02570 * 238.56725 * 21 17 13 41 41 H 1.08993 * 110.02909 * 359.95014 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6441 1.9678 0.8692 5 6 3.5459 1.4427 0.0560 6 1 4.1158 1.8998 -0.7395 7 6 4.1964 0.8594 1.1226 8 7 5.5106 0.8592 1.1712 9 14 3.2108 0.0693 2.4987 10 1 2.9748 -1.3618 2.1800 11 1 3.9669 0.1746 3.7725 12 1 1.9073 0.7670 2.6377 13 7 1.5954 2.1190 -1.2257 14 6 2.0232 3.5244 -1.2360 15 6 1.2176 4.2950 -2.2840 16 8 -0.1763 4.1837 -1.9897 17 6 2.0767 1.4134 -2.4208 18 6 3.5660 1.7362 -2.6611 19 6 3.6926 1.8201 -4.2026 20 6 2.3672 2.5060 -4.6175 21 6 1.3145 1.9028 -3.6647 22 1 -0.3633 0.4368 0.9302 23 1 -0.3635 -1.0240 -0.0868 24 1 -0.3634 0.5873 -0.8434 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 5.9682 0.4492 1.9217 28 1 1.8537 3.9630 -0.2527 29 1 3.0840 3.5794 -1.4806 30 1 1.5099 5.3450 -2.2670 31 1 1.4148 3.8790 -3.2720 32 1 -0.7485 4.6496 -2.6146 33 1 1.9419 0.3386 -2.2991 34 1 3.8279 2.6907 -2.2045 35 1 4.1973 0.9388 -2.2693 36 1 3.7650 0.8238 -4.6389 37 1 4.5493 2.4294 -4.4901 38 1 2.1236 2.2702 -5.6534 39 1 2.4355 3.5847 -4.4768 40 1 0.8105 1.0653 -4.1471 41 1 0.5869 2.6632 -3.3814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042505841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:32 Heat of formation + Delta-G solvation = -11.595077 kcal Electronic energy + Delta-G solvation = -19608.307428 eV Core-core repulsion = 16910.697802 eV Total energy + Delta-G solvation = -2697.609626 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.58325 -36.08596 -35.38229 -32.34846 -31.74806 -28.94225 -28.18493 -27.23776 -25.54987 -22.70793 -21.17162 -20.37975 -20.13226 -18.31384 -17.15109 -16.73855 -16.04380 -14.91835 -14.58714 -14.21401 -13.81750 -13.44927 -13.31092 -12.78780 -12.52432 -12.36849 -11.96653 -11.68914 -11.54455 -11.16870 -11.00113 -10.82499 -10.63797 -10.54351 -10.49167 -10.15565 -10.03561 -9.89494 -9.76605 -9.39918 -9.39597 -9.13003 -8.71906 -8.51167 -7.02853 -6.06043 -4.06148 3.29452 3.41012 3.44057 4.43047 4.76380 4.90547 5.20854 5.23205 5.28362 5.38558 5.66331 5.71720 5.95925 5.96196 5.99299 6.10452 6.10668 6.15320 6.20543 6.28081 6.31342 6.35095 6.46016 6.48867 6.62104 6.68800 6.75750 6.79776 6.86417 7.01488 7.05983 7.19492 7.30270 7.35579 7.65239 8.03615 8.23807 8.32668 8.51239 8.97861 9.58623 11.05086 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023759 B = 0.010024 C = 0.008826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.197858 B = 2792.641811 C = 3171.689403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.179 3.821 4 H 0.037 0.963 5 C -0.557 4.557 6 H 0.099 0.901 7 C 0.075 3.925 8 N -0.900 5.900 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.300 1.300 12 H -0.265 1.265 13 N -0.506 5.506 14 C 0.055 3.945 15 C 0.050 3.950 16 O -0.553 6.553 17 C 0.088 3.912 18 C -0.150 4.150 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.138 4.138 22 H 0.040 0.960 23 H 0.030 0.970 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.262 0.738 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.359 0.641 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 3.731 -9.341 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.071 3.929 4 H 0.055 0.945 5 C -0.595 4.595 6 H 0.117 0.883 7 C -0.127 4.127 8 N -0.538 5.538 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.228 1.228 12 H -0.190 1.190 13 N -0.228 5.228 14 C -0.073 4.073 15 C -0.027 4.027 16 O -0.356 6.356 17 C -0.021 4.021 18 C -0.188 4.188 19 C -0.167 4.167 20 C -0.167 4.167 21 C -0.176 4.176 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.203 0.797 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.859 3.303 -8.710 12.187 hybrid contribution 0.449 -0.254 0.496 0.715 sum -7.410 3.049 -8.215 11.475 Atomic orbital electron populations 1.21739 0.97306 0.99304 1.01819 1.21975 0.94164 0.99443 1.00395 1.19750 0.94217 0.90249 0.88648 0.94543 1.22298 0.90596 1.37958 1.08664 0.88305 1.24978 0.94593 0.95499 0.97660 1.69900 1.07340 1.45121 1.31452 0.86941 0.80439 0.79925 0.81470 1.20757 1.22839 1.18971 1.62505 1.57462 1.00534 1.02262 1.22118 0.96863 0.90023 0.98326 1.23049 0.81780 0.97267 1.00654 1.86713 1.16809 1.76956 1.55131 1.22187 0.91463 0.98767 0.89694 1.23365 0.98784 1.03694 0.92947 1.22563 0.96378 0.99668 0.98124 1.22495 0.96284 0.99483 0.98392 1.22697 0.98439 1.00985 0.95430 0.94132 0.95054 0.91420 0.93758 0.92255 0.92834 0.91495 0.91549 0.95382 0.90860 0.79671 0.90208 0.90043 0.90144 0.92327 0.92664 0.92726 0.92013 0.92946 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.84 37.15 0.37 -2.40 16 2 C -0.12 -2.69 4.64 -26.74 -0.12 -2.82 16 3 C 0.18 4.17 1.36 -68.87 -0.09 4.07 16 4 H 0.04 0.92 7.09 -51.92 -0.37 0.56 16 5 C -0.56 -14.64 7.24 -34.44 -0.25 -14.89 16 6 H 0.10 2.68 3.82 -52.49 -0.20 2.48 16 7 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 9 Si 0.88 22.06 24.39 -169.99 -4.15 17.92 16 10 H -0.28 -6.92 6.85 56.52 0.39 -6.53 16 11 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 12 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 13 N -0.51 -10.16 3.58 -218.76 -0.78 -10.94 16 14 C 0.05 1.04 4.62 -3.82 -0.02 1.03 16 15 C 0.05 0.75 6.31 37.16 0.23 0.99 16 16 O -0.55 -8.43 12.58 -35.23 -0.44 -8.87 16 17 C 0.09 1.63 2.68 -66.59 -0.18 1.45 16 18 C -0.15 -2.83 4.02 -25.07 -0.10 -2.93 16 19 C -0.13 -1.97 6.91 -24.73 -0.17 -2.14 16 20 C -0.13 -1.74 6.37 -25.07 -0.16 -1.90 16 21 C -0.14 -2.10 5.65 -25.61 -0.14 -2.24 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 1.28 7.53 -51.93 -0.39 0.89 16 25 H 0.04 1.04 3.24 -51.92 -0.17 0.87 16 26 H 0.06 1.29 5.95 -51.93 -0.31 0.98 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.07 1.37 7.91 -51.93 -0.41 0.96 16 29 H 0.07 1.32 4.54 -51.93 -0.24 1.09 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.02 2.34 -51.93 -0.12 0.90 16 32 H 0.36 3.63 9.12 45.56 0.42 4.05 16 33 H 0.08 1.58 5.55 -51.93 -0.29 1.29 16 34 H 0.08 1.65 3.93 -51.93 -0.20 1.44 16 35 H 0.08 1.78 7.07 -51.93 -0.37 1.41 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.79 6.37 -51.93 -0.33 0.46 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.41 4.18 -51.93 -0.22 1.19 16 LS Contribution 284.02 15.07 4.28 4.28 Total: -1.00 -29.44 284.02 -6.39 -35.83 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.34 Total: 7.63 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -0.74 Total: -19.79 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.01 Total: -36.99 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.44 Total: -8.87 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.15 Total: 17.92 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.44 -6.39 -35.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042505841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.234 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds