Wall clock time and date at job start Mon Mar 30 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46584 * 2 1 4 4 C 1.53002 * 109.46937 * 240.00082 * 2 1 3 5 5 C 1.52993 * 109.46800 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47243 * 60.00008 * 5 4 2 7 7 C 1.52995 * 109.46978 * 299.99757 * 6 5 4 8 8 C 1.53004 * 109.46882 * 179.97438 * 7 6 5 9 9 O 1.42908 * 109.47170 * 65.40410 * 8 7 6 10 10 N 1.46897 * 109.47664 * 299.99632 * 7 6 5 11 11 C 1.46896 * 111.00236 * 185.18432 * 10 7 6 12 12 C 1.52996 * 109.46987 * 184.93309 * 11 10 7 13 13 C 1.50701 * 109.47176 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99953 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00266 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00336 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47337 * 269.99914 * 17 15 13 19 19 H 1.48499 * 109.46992 * 29.99790 * 17 15 13 20 20 H 1.48500 * 109.47426 * 149.99814 * 17 15 13 21 21 C 1.52998 * 109.47106 * 60.00548 * 7 6 5 22 22 H 1.09001 * 109.47109 * 299.99580 * 1 2 3 23 23 H 1.09001 * 109.47302 * 59.99793 * 1 2 3 24 24 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47125 * 299.99845 * 4 2 1 26 26 H 1.09001 * 109.47023 * 59.99954 * 4 2 1 27 27 H 1.09001 * 109.46972 * 180.02562 * 5 4 2 28 28 H 1.09003 * 109.47450 * 299.99906 * 5 4 2 29 29 H 1.09001 * 109.47057 * 179.97438 * 6 5 4 30 30 H 1.09006 * 109.46715 * 60.00331 * 6 5 4 31 31 H 1.08998 * 109.47417 * 185.40161 * 8 7 6 32 32 H 1.09003 * 109.47315 * 305.40970 * 8 7 6 33 33 H 0.96696 * 113.99879 * 179.97438 * 9 8 7 34 34 H 1.00897 * 110.99778 * 309.14512 * 10 7 6 35 35 H 1.08992 * 109.47418 * 64.93133 * 11 10 7 36 36 H 1.09002 * 109.46968 * 304.92517 * 11 10 7 37 37 H 1.09006 * 109.47657 * 59.99702 * 12 11 10 38 38 H 1.09001 * 109.47386 * 299.99940 * 12 11 10 39 39 H 0.97000 * 120.00344 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.47669 * 59.99018 * 21 7 6 41 41 H 1.09001 * 109.47313 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7207 -1.2496 6 6 4.0804 -1.4416 -0.0003 7 6 3.5705 -0.7203 1.2489 8 6 4.0805 -1.4416 2.4981 9 8 5.5039 -1.3327 2.5632 10 7 4.0596 0.6648 1.2487 11 6 3.6924 1.3530 2.4934 12 6 4.1093 2.8225 2.4058 13 6 3.7332 3.5284 3.6830 14 1 3.2452 2.9835 4.4776 15 6 4.0121 4.8698 3.8372 16 7 4.6068 5.5333 2.8698 17 14 3.5452 5.7450 5.4200 18 1 2.1734 6.2992 5.2932 19 1 3.5874 4.7815 6.5493 20 1 4.5038 6.8499 5.6761 21 6 2.0405 -0.7210 1.2492 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6767 -1.7489 -1.2493 26 1 1.6766 -0.2074 -2.1392 27 1 3.9332 -1.2341 -2.1398 28 1 3.9329 0.3071 -1.2498 29 1 5.1704 -1.4415 -0.0008 30 1 3.7175 -2.4694 -0.0002 31 1 3.6404 -0.9867 3.3855 32 1 3.7984 -2.4934 2.4510 33 1 5.8969 -1.7679 3.3322 34 1 5.0569 0.6960 1.0988 35 1 4.2012 0.8805 3.3336 36 1 2.6141 1.2894 2.6392 37 1 3.6006 3.2951 1.5656 38 1 5.1877 2.8862 2.2599 39 1 4.8034 6.4769 2.9784 40 1 1.6775 -1.7487 1.2494 41 1 1.6771 -0.2067 2.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053126833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:48 Heat of formation + Delta-G solvation = -82.530865 kcal Electronic energy + Delta-G solvation = -18581.898318 eV Core-core repulsion = 15881.212686 eV Total energy + Delta-G solvation = -2700.685633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -39.64140 -36.42164 -34.64802 -32.95805 -32.00715 -30.48173 -27.87346 -26.28438 -25.47011 -23.99337 -21.87239 -20.27553 -20.04056 -18.64289 -17.17043 -16.22962 -15.26158 -15.10700 -14.83692 -14.38471 -14.24312 -13.93811 -13.66228 -12.79668 -12.62435 -12.49455 -12.25700 -11.99187 -11.77061 -11.51922 -11.42173 -11.11046 -10.97794 -10.79865 -10.63660 -10.49047 -10.24640 -10.05188 -9.97073 -9.71184 -9.55055 -9.27672 -9.05000 -8.29358 -7.58901 -5.94474 -3.96531 3.34248 3.40273 3.43216 4.25187 4.49042 4.80222 4.96539 5.03448 5.14072 5.30281 5.41288 5.43053 5.48317 5.57472 5.65789 5.73021 5.77779 5.83478 5.92753 5.99052 6.07083 6.10551 6.16257 6.27485 6.45241 6.48289 6.53930 6.57503 6.64372 6.66023 6.90399 7.13046 7.63372 7.71978 7.85657 7.92850 8.12383 8.21223 8.51711 9.11229 9.66659 11.16939 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024558 B = 0.006247 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.866165 B = 4481.108299 C = 4950.153576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.092 0.908 4 C -0.107 4.107 5 C -0.113 4.113 6 C -0.100 4.100 7 C 0.119 3.881 8 C 0.046 3.954 9 O -0.566 6.566 10 N -0.667 5.667 11 C 0.065 3.935 12 C 0.029 3.971 13 C -0.519 4.519 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.275 1.275 20 H -0.287 1.287 21 C -0.097 4.097 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.374 0.626 34 H 0.341 0.659 35 H 0.016 0.984 36 H 0.055 0.945 37 H 0.023 0.977 38 H 0.012 0.988 39 H 0.260 0.740 40 H 0.054 0.946 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 -15.612 -5.063 16.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.110 0.890 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.138 4.138 7 C 0.027 3.973 8 C -0.034 4.034 9 O -0.371 6.371 10 N -0.297 5.297 11 C -0.063 4.063 12 C -0.009 4.009 13 C -0.558 4.558 14 H 0.070 0.930 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.200 1.200 20 H -0.213 1.213 21 C -0.134 4.134 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.220 0.780 34 H 0.160 0.840 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.424 -14.852 -6.022 16.626 hybrid contribution 0.440 -0.236 2.202 2.257 sum -3.985 -15.088 -3.821 16.066 Atomic orbital electron populations 1.21847 0.96191 1.00817 1.01563 1.20991 0.93986 1.01604 0.93662 0.88996 1.21525 0.95825 0.99492 0.97643 1.21438 0.95401 1.02017 0.96223 1.21491 1.00568 0.97709 0.94065 1.20944 0.94651 0.89593 0.92134 1.23003 0.81459 0.98703 1.00205 1.86451 1.20235 1.80280 1.50106 1.60744 1.19759 1.11373 1.37869 1.22161 0.99062 0.97108 0.87988 1.19010 0.96547 0.88386 0.96908 1.21192 1.38755 0.94455 1.01389 0.93008 1.24992 0.95324 0.97615 0.96414 1.69980 1.42024 1.09027 1.32213 0.86627 0.78252 0.79373 0.83911 1.20692 1.20025 1.21251 1.21543 0.93277 0.99628 0.98998 0.92780 0.92992 0.93536 0.93152 0.92592 0.93214 0.90314 0.91728 0.92736 0.93331 0.94473 0.77957 0.84038 0.96608 0.92615 0.95904 0.96921 0.93080 0.92684 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.19 37.16 0.34 -1.45 16 2 C -0.08 -1.16 2.56 -90.62 -0.23 -1.39 16 3 H 0.09 1.55 7.60 -51.93 -0.39 1.16 16 4 C -0.11 -1.32 5.20 -26.73 -0.14 -1.46 16 5 C -0.11 -1.47 5.77 -26.73 -0.15 -1.62 16 6 C -0.10 -1.33 4.70 -26.73 -0.13 -1.46 16 7 C 0.12 1.75 0.38 -131.60 -0.05 1.70 16 8 C 0.05 0.64 5.20 37.16 0.19 0.83 16 9 O -0.57 -8.03 12.61 -35.23 -0.44 -8.47 16 10 N -0.67 -12.04 4.46 -99.98 -0.45 -12.49 16 11 C 0.06 1.38 4.74 -3.83 -0.02 1.37 16 12 C 0.03 0.77 5.27 -27.88 -0.15 0.62 16 13 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 17 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C -0.10 -1.35 3.79 -26.73 -0.10 -1.45 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.17 7.60 -51.93 -0.39 0.78 16 29 H 0.06 0.91 7.84 -51.93 -0.41 0.50 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.72 6.77 -51.93 -0.35 0.37 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.37 3.71 9.12 45.56 0.42 4.12 16 34 H 0.34 6.48 8.27 -39.29 -0.32 6.15 16 35 H 0.02 0.34 6.62 -51.93 -0.34 0.00 16 36 H 0.06 1.19 6.23 -51.93 -0.32 0.86 16 37 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.00 6.43 -51.93 -0.33 0.66 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -30.73 314.67 -7.93 -38.65 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.65 Total: 5.25 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -0.84 Total: -18.01 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.29 Total: -39.12 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.44 Total: -8.47 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.73 -7.93 -38.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053126833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.877 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds