Wall clock time and date at job start Mon Mar 30 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46584 * 2 1 4 4 C 1.53002 * 109.46937 * 240.00082 * 2 1 3 5 5 C 1.52993 * 109.46800 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47243 * 60.00008 * 5 4 2 7 7 C 1.52995 * 109.46978 * 299.99757 * 6 5 4 8 8 C 1.53004 * 109.46882 * 179.97438 * 7 6 5 9 9 O 1.42908 * 109.47170 * 65.40410 * 8 7 6 10 10 N 1.46897 * 109.47664 * 299.99632 * 7 6 5 11 11 C 1.46896 * 111.00236 * 185.18432 * 10 7 6 12 12 C 1.52996 * 109.46987 * 184.93309 * 11 10 7 13 13 C 1.50701 * 109.47176 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99953 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00266 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00336 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47337 * 269.99914 * 17 15 13 19 19 H 1.48499 * 109.46992 * 29.99790 * 17 15 13 20 20 H 1.48500 * 109.47426 * 149.99814 * 17 15 13 21 21 C 1.52998 * 109.47106 * 60.00548 * 7 6 5 22 22 H 1.09001 * 109.47109 * 299.99580 * 1 2 3 23 23 H 1.09001 * 109.47302 * 59.99793 * 1 2 3 24 24 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47125 * 299.99845 * 4 2 1 26 26 H 1.09001 * 109.47023 * 59.99954 * 4 2 1 27 27 H 1.09001 * 109.46972 * 180.02562 * 5 4 2 28 28 H 1.09003 * 109.47450 * 299.99906 * 5 4 2 29 29 H 1.09001 * 109.47057 * 179.97438 * 6 5 4 30 30 H 1.09006 * 109.46715 * 60.00331 * 6 5 4 31 31 H 1.08998 * 109.47417 * 185.40161 * 8 7 6 32 32 H 1.09003 * 109.47315 * 305.40970 * 8 7 6 33 33 H 0.96696 * 113.99879 * 179.97438 * 9 8 7 34 34 H 1.00897 * 110.99778 * 309.14512 * 10 7 6 35 35 H 1.08992 * 109.47418 * 64.93133 * 11 10 7 36 36 H 1.09002 * 109.46968 * 304.92517 * 11 10 7 37 37 H 1.09006 * 109.47657 * 59.99702 * 12 11 10 38 38 H 1.09001 * 109.47386 * 299.99940 * 12 11 10 39 39 H 0.97000 * 120.00344 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.47669 * 59.99018 * 21 7 6 41 41 H 1.09001 * 109.47313 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7207 -1.2496 6 6 4.0804 -1.4416 -0.0003 7 6 3.5705 -0.7203 1.2489 8 6 4.0805 -1.4416 2.4981 9 8 5.5039 -1.3327 2.5632 10 7 4.0596 0.6648 1.2487 11 6 3.6924 1.3530 2.4934 12 6 4.1093 2.8225 2.4058 13 6 3.7332 3.5284 3.6830 14 1 3.2452 2.9835 4.4776 15 6 4.0121 4.8698 3.8372 16 7 4.6068 5.5333 2.8698 17 14 3.5452 5.7450 5.4200 18 1 2.1734 6.2992 5.2932 19 1 3.5874 4.7815 6.5493 20 1 4.5038 6.8499 5.6761 21 6 2.0405 -0.7210 1.2492 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6767 -1.7489 -1.2493 26 1 1.6766 -0.2074 -2.1392 27 1 3.9332 -1.2341 -2.1398 28 1 3.9329 0.3071 -1.2498 29 1 5.1704 -1.4415 -0.0008 30 1 3.7175 -2.4694 -0.0002 31 1 3.6404 -0.9867 3.3855 32 1 3.7984 -2.4934 2.4510 33 1 5.8969 -1.7679 3.3322 34 1 5.0569 0.6960 1.0988 35 1 4.2012 0.8805 3.3336 36 1 2.6141 1.2894 2.6392 37 1 3.6006 3.2951 1.5656 38 1 5.1877 2.8862 2.2599 39 1 4.8034 6.4769 2.9784 40 1 1.6775 -1.7487 1.2494 41 1 1.6771 -0.2067 2.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053126833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:45 Heat of formation + Delta-G solvation = -103.842778 kcal Electronic energy + Delta-G solvation = -18582.822472 eV Core-core repulsion = 15881.212686 eV Total energy + Delta-G solvation = -2701.609786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.82577 -37.50862 -36.28965 -34.79837 -33.29210 -31.97619 -29.62936 -27.33488 -26.55665 -25.96373 -23.20126 -21.97113 -21.15282 -19.88565 -18.45695 -18.23032 -16.77448 -16.35100 -16.19442 -16.12368 -15.54363 -15.05845 -14.81786 -14.35226 -14.31659 -13.83886 -13.61632 -13.25848 -13.01374 -12.89260 -12.84265 -12.63692 -12.58950 -12.36372 -12.08582 -11.90180 -11.69567 -11.36789 -11.28753 -11.16711 -11.03176 -10.92629 -10.64426 -10.55069 -9.07018 -8.19885 -6.31631 1.38429 1.40594 1.51363 2.39861 3.13001 3.15516 3.57428 3.87386 3.90241 4.06129 4.23044 4.34857 4.43836 4.50451 4.50835 4.59826 4.68825 4.71390 4.75556 4.82151 4.90285 4.99010 5.05294 5.06163 5.10322 5.17609 5.28304 5.39307 5.47361 5.50137 5.55277 5.58455 5.71993 5.77595 5.85074 6.19704 6.41521 6.63285 6.85654 6.87339 7.37485 8.92394 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024558 B = 0.006247 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.866165 B = 4481.108299 C = 4950.153576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.050 0.950 4 C -0.102 4.102 5 C -0.113 4.113 6 C -0.094 4.094 7 C 0.112 3.888 8 C 0.049 3.951 9 O -0.585 6.585 10 N -0.669 5.669 11 C 0.091 3.909 12 C 0.038 3.962 13 C -0.543 4.543 14 H 0.058 0.942 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.263 1.263 20 H -0.281 1.281 21 C -0.094 4.094 22 H 0.042 0.958 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.392 0.608 34 H 0.334 0.666 35 H 0.013 0.987 36 H 0.056 0.944 37 H -0.010 1.010 38 H -0.017 1.017 39 H 0.263 0.737 40 H 0.084 0.916 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -17.546 -4.494 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.068 0.932 4 C -0.139 4.139 5 C -0.150 4.150 6 C -0.131 4.131 7 C 0.021 3.979 8 C -0.031 4.031 9 O -0.392 6.392 10 N -0.299 5.299 11 C -0.038 4.038 12 C 0.001 3.999 13 C -0.581 4.581 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.187 1.187 20 H -0.206 1.206 21 C -0.132 4.132 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.241 0.759 34 H 0.151 0.849 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.008 0.992 38 H 0.001 0.999 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.470 -16.814 -5.447 18.502 hybrid contribution 0.799 0.350 1.969 2.153 sum -4.671 -16.464 -3.478 17.464 Atomic orbital electron populations 1.21805 0.94790 1.02121 1.01283 1.20943 0.95209 0.99516 0.94717 0.93153 1.21490 0.95105 1.00532 0.96787 1.21420 0.96056 1.00523 0.97049 1.21447 0.99972 0.98671 0.93036 1.21156 0.95329 0.87585 0.93842 1.22942 0.81324 1.00074 0.98748 1.86413 1.20446 1.80936 1.51428 1.60657 1.19209 1.14162 1.35878 1.21692 0.98703 0.94011 0.89424 1.18845 0.94140 0.91789 0.95170 1.21609 1.39057 0.95280 1.02202 0.92387 1.25989 0.94943 0.98501 1.00335 1.70125 1.42962 1.09521 1.34614 0.85428 0.78203 0.78084 0.79200 1.19659 1.18720 1.20631 1.21552 0.92508 1.01009 0.98157 0.93878 0.92563 0.91335 0.90842 0.92208 0.91314 0.93252 0.92699 0.90206 0.94741 0.91477 0.75878 0.84856 0.96885 0.92587 0.99169 0.99874 0.92789 0.89795 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.19 71.98 0.66 -2.60 16 2 C -0.09 -2.29 2.56 -10.79 -0.03 -2.32 16 3 H 0.05 1.77 7.60 -2.39 -0.02 1.75 16 4 C -0.10 -2.29 5.20 30.59 0.16 -2.13 16 5 C -0.11 -2.77 5.77 30.59 0.18 -2.59 16 6 C -0.09 -2.29 4.70 30.59 0.14 -2.14 16 7 C 0.11 3.19 0.38 3.53 0.00 3.19 16 8 C 0.05 1.26 5.20 71.98 0.37 1.64 16 9 O -0.58 -15.88 12.61 -148.98 -1.88 -17.75 16 10 N -0.67 -24.91 4.46 -470.22 -2.10 -27.00 16 11 C 0.09 3.99 4.74 86.30 0.41 4.40 16 12 C 0.04 2.13 5.27 29.85 0.16 2.29 16 13 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 0.01 5.46 84.65 0.46 0.47 16 16 N -0.93 -58.62 13.29 21.45 0.28 -58.33 16 17 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 C -0.09 -2.49 3.79 30.59 0.12 -2.37 16 22 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.49 7.60 -2.39 -0.02 1.48 16 29 H 0.05 1.46 7.84 -2.39 -0.02 1.44 16 30 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.03 0.99 6.77 -2.39 -0.02 0.97 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.39 7.17 9.12 -74.06 -0.68 6.50 16 34 H 0.33 13.19 8.27 -89.70 -0.74 12.45 16 35 H 0.01 0.58 6.62 -2.39 -0.02 0.56 16 36 H 0.06 2.46 6.23 -2.39 -0.01 2.44 16 37 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 38 H -0.02 -1.05 8.14 -2.39 -0.02 -1.06 16 39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.41 6.43 -2.39 -0.02 1.40 16 Total: -1.00 -67.84 314.67 0.78 -67.06 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -0.42 Total: 22.74 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 2.87 Total: -34.04 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -1.81 Total: -85.34 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -1.88 Total: -17.75 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.84 0.78 -67.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053126833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.784 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds