Wall clock time and date at job start Mon Mar 30 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47133 * 2 1 4 4 C 1.53007 * 109.46972 * 119.99076 * 2 1 3 5 5 C 1.52994 * 109.47027 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47473 * 300.00042 * 5 4 2 7 7 C 1.53007 * 109.47029 * 59.99959 * 6 5 4 8 8 C 1.53006 * 109.46740 * 60.00154 * 7 6 5 9 9 O 1.42899 * 109.47003 * 64.91250 * 8 7 6 10 10 N 1.46901 * 109.47244 * 180.02562 * 7 6 5 11 11 C 1.46895 * 110.99642 * 177.30824 * 10 7 6 12 12 C 1.53006 * 109.46944 * 174.64180 * 11 10 7 13 13 C 1.50695 * 109.46972 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00480 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99672 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00121 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00094 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46959 * 59.99977 * 17 15 13 19 19 H 1.48497 * 109.47334 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47202 * 300.00411 * 17 15 13 21 21 C 1.52991 * 109.47613 * 239.99352 * 2 1 3 22 22 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47467 * 300.00476 * 1 2 3 24 24 H 1.09000 * 109.46694 * 60.00979 * 1 2 3 25 25 H 1.08995 * 109.46907 * 300.00439 * 4 2 1 26 26 H 1.09000 * 109.46438 * 60.00498 * 4 2 1 27 27 H 1.09001 * 109.47090 * 180.02562 * 5 4 2 28 28 H 1.09000 * 109.47572 * 60.00004 * 5 4 2 29 29 H 1.09000 * 109.47415 * 300.00675 * 6 5 4 30 30 H 1.08995 * 109.47594 * 180.02562 * 6 5 4 31 31 H 1.08994 * 109.46770 * 184.91568 * 8 7 6 32 32 H 1.09003 * 109.47019 * 304.91585 * 8 7 6 33 33 H 0.96696 * 113.99678 * 179.97438 * 9 8 7 34 34 H 1.00900 * 110.99526 * 53.35170 * 10 7 6 35 35 H 1.09000 * 109.47269 * 294.63651 * 11 10 7 36 36 H 1.08998 * 109.47390 * 54.64146 * 11 10 7 37 37 H 1.09000 * 109.46705 * 299.99816 * 12 11 10 38 38 H 1.08998 * 109.47105 * 59.99791 * 12 11 10 39 39 H 0.96997 * 119.99902 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47361 * 60.00077 * 21 2 1 41 41 H 1.09004 * 109.47114 * 300.00068 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2498 6 6 4.0806 -1.4416 0.0007 7 6 3.5706 -0.7205 -1.2488 8 6 4.0801 0.7222 -1.2486 9 8 5.5045 0.7243 -1.3635 10 7 4.0603 -1.4131 -2.4481 11 6 3.5374 -0.7853 -3.6689 12 6 4.1719 -1.4464 -4.8942 13 6 3.6359 -0.8020 -6.1466 14 1 2.9146 -0.0013 -6.0757 15 6 4.0665 -1.2346 -7.3829 16 7 4.9452 -2.2093 -7.4692 17 14 3.4016 -0.4363 -8.9354 18 1 3.7308 1.0118 -8.9273 19 1 4.0175 -1.0778 -10.1246 20 1 1.9277 -0.6084 -8.9883 21 6 2.0401 -0.7213 -1.2490 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6766 -0.2072 2.1393 26 1 1.6767 -1.7487 1.2494 27 1 3.9333 -1.2346 2.1396 28 1 3.9330 0.3072 1.2498 29 1 3.7176 -2.4694 0.0005 30 1 5.1705 -1.4416 0.0011 31 1 3.6467 1.2607 -2.0913 32 1 3.7900 1.2099 -0.3178 33 1 5.8971 1.6079 -1.3703 34 1 3.8288 -2.3948 -2.4185 35 1 2.4554 -0.9114 -3.7075 36 1 3.7794 0.2774 -3.6632 37 1 5.2539 -1.3203 -4.8556 38 1 3.9298 -2.5092 -4.8999 39 1 5.2478 -2.5138 -8.3390 40 1 1.6768 -0.2076 -2.1391 41 1 1.6768 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053126835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:51 Heat of formation + Delta-G solvation = -100.900160 kcal Electronic energy + Delta-G solvation = -18418.543945 eV Core-core repulsion = 15717.061760 eV Total energy + Delta-G solvation = -2701.482185 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02853 -37.20847 -36.61822 -34.93902 -33.33874 -31.90113 -29.36792 -27.42524 -26.87396 -25.96357 -23.37105 -21.87547 -21.53586 -19.60157 -18.50382 -18.22640 -17.20212 -16.45326 -16.23454 -15.64787 -15.51959 -14.98232 -14.85990 -14.46632 -14.29651 -14.08096 -13.41882 -13.33994 -13.26851 -13.10480 -12.83794 -12.70264 -12.62861 -12.38957 -12.04035 -11.90208 -11.75112 -11.45654 -11.42327 -11.25908 -11.07297 -10.82456 -10.61883 -10.53229 -9.09471 -8.20093 -6.32410 1.38718 1.42677 1.50698 2.39930 3.12681 3.20223 3.50985 3.71681 3.85393 4.03909 4.08989 4.25813 4.34004 4.41483 4.52248 4.54966 4.57751 4.63596 4.71380 4.75948 4.79105 4.89727 5.00693 5.06354 5.08139 5.12979 5.20041 5.31161 5.35977 5.41374 5.45361 5.50102 5.57983 5.69319 5.81215 6.17638 6.37029 6.58758 6.85068 7.04026 7.36788 8.92121 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031689 B = 0.005387 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.386784 B = 5196.431973 C = 5579.043319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.113 4.113 6 C -0.098 4.098 7 C 0.114 3.886 8 C 0.090 3.910 9 O -0.573 6.573 10 N -0.682 5.682 11 C 0.091 3.909 12 C 0.036 3.964 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.265 1.265 21 C -0.137 4.137 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.384 0.616 34 H 0.332 0.668 35 H 0.019 0.981 36 H 0.053 0.947 37 H -0.013 1.013 38 H -0.013 1.013 39 H 0.264 0.736 40 H 0.051 0.949 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.138 6.206 18.962 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.151 4.151 6 C -0.136 4.136 7 C 0.023 3.977 8 C 0.012 3.988 9 O -0.379 6.379 10 N -0.311 5.311 11 C -0.038 4.038 12 C -0.002 4.002 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.190 1.190 21 C -0.177 4.177 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.150 0.850 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.525 5.799 18.806 20.733 hybrid contribution -0.805 0.284 -1.316 1.569 sum -7.331 6.083 17.490 19.916 Atomic orbital electron populations 1.21816 0.94496 1.01916 1.02020 1.21145 0.96064 0.99475 0.93962 0.90851 1.21604 0.94967 1.00812 0.97328 1.21555 0.95875 1.00891 0.96761 1.21425 1.00548 0.98589 0.93034 1.21086 0.92045 0.93786 0.90739 1.22336 0.81481 0.95667 0.99341 1.86602 1.20061 1.34086 1.97177 1.60564 1.63288 1.06019 1.01235 1.21712 0.95105 0.97939 0.89063 1.18873 0.94759 0.94314 0.92250 1.21568 1.25298 1.19209 0.92248 0.92267 1.26010 0.95181 0.95567 1.03016 1.70120 1.32496 1.29094 1.25536 0.85458 0.78820 0.78779 0.77713 1.19107 1.20680 1.19023 1.22295 0.95370 1.01156 0.98855 0.92841 0.91125 0.93347 0.90166 0.92027 0.90589 0.91510 0.92398 0.92462 0.95462 0.90838 0.76795 0.85004 0.96317 0.92851 0.99407 0.99480 0.92739 0.93056 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.19 71.98 0.66 -1.83 16 2 C -0.09 -1.69 2.45 -10.79 -0.03 -1.72 16 3 H 0.07 1.37 6.54 -2.39 -0.02 1.35 16 4 C -0.11 -1.82 5.20 30.59 0.16 -1.66 16 5 C -0.11 -2.11 5.65 30.59 0.17 -1.93 16 6 C -0.10 -2.51 4.86 30.60 0.15 -2.36 16 7 C 0.11 3.38 0.50 3.55 0.00 3.38 16 8 C 0.09 2.51 4.79 71.98 0.35 2.86 16 9 O -0.57 -17.71 12.96 -148.98 -1.93 -19.64 16 10 N -0.68 -26.36 5.84 -470.08 -2.75 -29.11 16 11 C 0.09 4.06 4.77 86.31 0.41 4.47 16 12 C 0.04 2.01 5.28 29.85 0.16 2.17 16 13 C -0.54 -32.33 9.11 25.60 0.23 -32.09 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 0.01 5.46 84.65 0.46 0.47 16 16 N -0.93 -58.83 13.29 21.45 0.28 -58.55 16 17 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 C -0.14 -3.59 3.69 30.61 0.11 -3.48 16 22 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.21 6.32 -2.39 -0.02 1.20 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.69 7.82 -2.39 -0.02 1.67 16 31 H 0.03 0.83 6.60 -2.39 -0.02 0.82 16 32 H 0.07 1.60 4.83 -2.39 -0.01 1.59 16 33 H 0.38 8.21 9.12 -74.06 -0.68 7.53 16 34 H 0.33 12.63 8.75 -89.69 -0.79 11.84 16 35 H 0.02 0.82 6.57 -2.39 -0.02 0.80 16 36 H 0.05 2.42 6.22 -2.39 -0.01 2.40 16 37 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 38 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.05 1.52 6.48 -2.39 -0.02 1.51 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -69.94 310.62 0.03 -69.91 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.45 Total: 21.83 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 2.84 Total: -31.72 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.46 Total: -87.66 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.93 Total: -19.64 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -69.94 0.03 -69.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053126835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.986 kcal (2) G-P(sol) polarization free energy of solvation -69.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds