Wall clock time and date at job start Mon Mar 30 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47394 * 2 1 4 4 C 1.53008 * 109.46896 * 240.00190 * 2 1 3 5 5 C 1.53000 * 109.46896 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47086 * 60.00071 * 5 4 2 7 7 C 1.52999 * 109.47355 * 299.99706 * 6 5 4 8 8 C 1.53006 * 109.46996 * 300.00088 * 7 6 5 9 9 O 1.42893 * 109.47248 * 295.15197 * 8 7 6 10 10 N 1.46896 * 109.47482 * 180.02562 * 7 6 5 11 11 C 1.46907 * 110.99615 * 295.72717 * 10 7 6 12 12 C 1.53001 * 109.47090 * 174.65545 * 11 10 7 13 13 C 1.50695 * 109.46995 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00326 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99822 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99816 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00011 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47128 * 89.99636 * 17 15 13 19 19 H 1.48504 * 109.47292 * 209.99686 * 17 15 13 20 20 H 1.48499 * 109.47285 * 329.99514 * 17 15 13 21 21 C 1.52992 * 109.46934 * 59.99918 * 7 6 5 22 22 H 1.09003 * 109.46793 * 299.99628 * 1 2 3 23 23 H 1.08993 * 109.47050 * 59.99717 * 1 2 3 24 24 H 1.09000 * 109.47394 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46944 * 300.00086 * 4 2 1 26 26 H 1.08994 * 109.46675 * 60.00125 * 4 2 1 27 27 H 1.09003 * 109.46793 * 180.02562 * 5 4 2 28 28 H 1.09000 * 109.47394 * 299.99810 * 5 4 2 29 29 H 1.09006 * 109.46794 * 179.97438 * 6 5 4 30 30 H 1.08995 * 109.47385 * 60.00362 * 6 5 4 31 31 H 1.09000 * 109.47174 * 55.15179 * 8 7 6 32 32 H 1.08998 * 109.47259 * 175.14789 * 8 7 6 33 33 H 0.96709 * 114.00072 * 179.97438 * 9 8 7 34 34 H 1.00890 * 111.00361 * 171.77591 * 10 7 6 35 35 H 1.08996 * 109.47052 * 54.65518 * 11 10 7 36 36 H 1.08996 * 109.47158 * 294.65718 * 11 10 7 37 37 H 1.09002 * 109.46715 * 299.99666 * 12 11 10 38 38 H 1.08998 * 109.47211 * 59.99519 * 12 11 10 39 39 H 0.96994 * 119.99947 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47162 * 60.00366 * 21 7 6 41 41 H 1.09003 * 109.46944 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0794 -1.4435 0.0002 7 6 3.5695 -0.7223 1.2495 8 6 4.0801 0.7201 1.2498 9 8 5.5045 0.7211 1.3639 10 7 4.0591 -1.4148 2.4488 11 6 3.5064 -2.7732 2.5349 12 6 4.1393 -3.5073 3.7187 13 6 3.5727 -4.9009 3.8065 14 1 2.8353 -5.2303 3.0895 15 6 3.9966 -5.7560 4.8017 16 7 3.5018 -6.9721 4.8787 17 14 5.2726 -5.1866 6.0414 18 1 4.5897 -4.5684 7.2062 19 1 6.0735 -6.3510 6.4978 20 1 6.1691 -4.1879 5.4059 21 6 2.0396 -0.7217 1.2491 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.6766 -1.7489 -1.2493 26 1 1.6766 -0.2073 -2.1392 27 1 3.9333 -1.2352 -2.1393 28 1 3.9337 0.3057 -1.2488 29 1 5.1695 -1.4443 0.0001 30 1 3.7158 -2.4710 -0.0001 31 1 3.7898 1.2085 0.3196 32 1 3.6477 1.2584 2.0932 33 1 5.8980 1.6045 1.3702 34 1 3.8503 -0.8860 3.2823 35 1 3.7246 -3.3133 1.6136 36 1 2.4271 -2.7179 2.6766 37 1 5.2186 -3.5626 3.5768 38 1 3.9211 -2.9672 4.6399 39 1 3.7996 -7.5734 5.5790 40 1 1.6758 -1.7492 1.2489 41 1 1.6763 -0.2083 2.1394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053126837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:55 Heat of formation + Delta-G solvation = -74.572060 kcal Electronic energy + Delta-G solvation = -18454.504900 eV Core-core repulsion = 15754.164387 eV Total energy + Delta-G solvation = -2700.340513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.97971 -36.18061 -35.28977 -32.93099 -32.14118 -30.74219 -28.08042 -26.40931 -25.95832 -23.80575 -22.11479 -20.60282 -20.29941 -18.33995 -17.23726 -16.69649 -15.62716 -15.22588 -14.82491 -14.42552 -14.35578 -14.01655 -13.40511 -13.25087 -12.92134 -12.61665 -12.37352 -12.21314 -12.13977 -11.79131 -11.73098 -11.34253 -11.08595 -11.00406 -10.80866 -10.39621 -10.32918 -9.95618 -9.87768 -9.75676 -9.70864 -9.54495 -9.13795 -8.47933 -7.71235 -5.99374 -3.96992 3.36620 3.43898 3.52091 4.25591 4.51937 4.55332 4.66218 4.80567 4.93020 5.08909 5.19642 5.28686 5.35645 5.37351 5.46754 5.54021 5.61213 5.64238 5.65966 5.78031 5.85453 5.96870 6.03971 6.08304 6.16994 6.25648 6.31597 6.36877 6.40407 6.54226 6.63168 6.90830 7.25779 7.47316 7.69764 7.79061 7.88052 8.02795 8.59170 9.04978 9.63770 11.14052 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027771 B = 0.005911 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.004669 B = 4735.524995 C = 5214.926037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.103 4.103 7 C 0.122 3.878 8 C 0.086 3.914 9 O -0.550 6.550 10 N -0.672 5.672 11 C 0.070 3.930 12 C -0.008 4.008 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.066 3.934 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.262 1.262 21 C -0.144 4.144 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.366 0.634 34 H 0.332 0.668 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.025 0.975 38 H 0.007 0.993 39 H 0.262 0.738 40 H 0.077 0.923 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 18.135 -10.899 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.141 4.141 7 C 0.030 3.970 8 C 0.008 3.992 9 O -0.353 6.353 10 N -0.301 5.301 11 C -0.058 4.058 12 C -0.046 4.046 13 C -0.557 4.557 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.545 5.545 17 Si 0.708 3.292 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.187 1.187 21 C -0.184 4.184 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.211 0.789 34 H 0.149 0.851 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.043 0.957 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.789 17.090 -11.070 20.441 hybrid contribution -0.369 0.932 1.056 1.456 sum -2.158 18.022 -10.015 20.730 Atomic orbital electron populations 1.21841 0.95433 1.01984 1.01247 1.21141 0.95304 0.99275 0.95144 0.91532 1.21626 0.95843 1.00860 0.96966 1.21601 0.95234 1.00676 0.98216 1.21506 1.01726 0.98983 0.91867 1.20862 0.90997 0.92251 0.92895 1.22331 0.81761 0.96325 0.98766 1.86685 1.19454 1.32131 1.97063 1.60655 1.62338 1.03870 1.03245 1.22032 0.95796 0.87213 1.00772 1.19521 0.97037 0.95339 0.92723 1.21095 1.24474 0.95869 1.14299 0.91224 1.25003 0.96220 0.94702 0.97520 1.69920 1.43964 1.06606 1.34006 0.86752 0.82333 0.78442 0.81667 1.20469 1.21494 1.18672 1.22392 0.96525 1.02013 0.97436 0.92877 0.92945 0.92530 0.91799 0.92376 0.92046 0.92170 0.90598 0.91562 0.93250 0.94608 0.78866 0.85064 0.91562 0.95969 0.95701 0.97468 0.92811 0.90397 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.19 37.16 0.34 -1.09 16 2 C -0.09 -0.95 2.45 -90.62 -0.22 -1.17 16 3 H 0.07 0.65 6.54 -51.93 -0.34 0.31 16 4 C -0.12 -1.22 5.20 -26.73 -0.14 -1.36 16 5 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 6 C -0.10 -1.50 4.52 -26.73 -0.12 -1.62 16 7 C 0.12 1.74 0.50 -131.61 -0.07 1.67 16 8 C 0.09 1.04 5.30 37.16 0.20 1.23 16 9 O -0.55 -7.18 12.95 -35.23 -0.46 -7.63 16 10 N -0.67 -11.95 5.85 -99.97 -0.59 -12.54 16 11 C 0.07 1.46 4.74 -3.82 -0.02 1.44 16 12 C -0.01 -0.21 4.35 -27.88 -0.12 -0.33 16 13 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 17 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 21 C -0.14 -1.88 3.64 -26.74 -0.10 -1.98 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.64 6.32 -51.93 -0.33 0.31 16 29 H 0.08 1.23 7.82 -51.93 -0.41 0.82 16 30 H 0.07 1.06 6.39 -51.93 -0.33 0.73 16 31 H 0.05 0.51 4.83 -51.93 -0.25 0.26 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.37 2.96 9.12 45.56 0.42 3.37 16 34 H 0.33 5.68 8.73 -39.30 -0.34 5.33 16 35 H 0.07 1.42 6.17 -51.93 -0.32 1.10 16 36 H 0.02 0.46 6.56 -51.93 -0.34 0.12 16 37 H 0.02 0.65 7.20 -51.93 -0.37 0.27 16 38 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.08 1.17 6.47 -51.93 -0.34 0.83 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -32.43 306.81 -7.46 -39.89 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.32 Total: 3.95 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -0.83 Total: -18.38 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.19 Total: -40.31 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.46 Total: -7.63 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.43 -7.46 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053126837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.687 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds