Wall clock time and date at job start Mon Mar 30 2020 05:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47515 * 2 1 4 4 C 1.52997 * 109.47075 * 239.99024 * 2 1 3 5 5 C 1.53000 * 109.46849 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47310 * 299.99986 * 5 4 2 7 7 C 1.53003 * 109.46740 * 180.02562 * 5 4 2 8 8 C 1.52992 * 109.47364 * 60.00388 * 5 4 2 9 9 C 1.52998 * 109.47172 * 300.00207 * 8 5 4 10 10 C 1.53002 * 109.47257 * 179.97438 * 9 8 5 11 11 O 1.42900 * 109.47011 * 179.97438 * 10 9 8 12 12 N 1.46505 * 109.46739 * 299.99543 * 9 8 5 13 13 C 1.36935 * 120.00060 * 295.39744 * 12 9 8 14 14 H 1.07997 * 120.00123 * 0.02562 * 13 12 9 15 15 C 1.38813 * 120.00072 * 180.02562 * 13 12 9 16 16 N 1.31620 * 119.99624 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00189 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46951 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47184 * 119.99583 * 17 15 13 20 20 H 1.48498 * 109.46846 * 239.99784 * 17 15 13 21 21 C 1.53000 * 109.46543 * 119.99500 * 2 1 3 22 22 H 1.09000 * 109.47315 * 300.01341 * 1 2 3 23 23 H 1.09009 * 109.46898 * 60.00348 * 1 2 3 24 24 H 1.08993 * 109.47742 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46821 * 60.00955 * 4 2 1 26 26 H 1.08996 * 109.47092 * 300.00572 * 4 2 1 27 27 H 1.09002 * 109.47041 * 167.11301 * 6 5 4 28 28 H 1.08995 * 109.47489 * 287.11393 * 6 5 4 29 29 H 1.09004 * 109.46891 * 47.11475 * 6 5 4 30 30 H 1.09000 * 109.47429 * 299.99555 * 7 5 4 31 31 H 1.08995 * 109.47605 * 60.00287 * 7 5 4 32 32 H 1.09006 * 109.46935 * 179.97438 * 7 5 4 33 33 H 1.09004 * 109.47057 * 59.99728 * 8 5 4 34 34 H 1.08998 * 109.47682 * 179.97438 * 8 5 4 35 35 H 1.08996 * 109.47127 * 299.99256 * 10 9 8 36 36 H 1.08996 * 109.47015 * 59.99681 * 10 9 8 37 37 H 0.96700 * 113.99748 * 179.97438 * 11 10 9 38 38 H 0.97003 * 120.00018 * 115.39629 * 12 9 8 39 39 H 0.97010 * 119.99720 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47497 * 60.00348 * 21 2 1 41 41 H 1.08995 * 109.47475 * 299.99388 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 -1.2491 5 6 3.5700 -0.7220 -1.2487 6 6 4.0805 0.7203 -1.2486 7 6 4.0799 -1.4429 -2.4982 8 6 4.0795 -1.4434 0.0005 9 6 3.5694 -0.7221 1.2497 10 6 4.0784 -1.4440 2.4990 11 8 3.6024 -0.7699 3.6657 12 7 4.0583 0.6590 1.2499 13 6 5.4011 0.9099 1.3453 14 1 6.0997 0.0898 1.4201 15 6 5.8642 2.2185 1.3460 16 7 5.0128 3.2180 1.2544 17 14 7.6960 2.5609 1.4756 18 1 8.4346 1.2758 1.5658 19 1 8.1462 3.3078 0.2736 20 1 7.9633 3.3713 2.6909 21 6 2.0398 -0.7212 1.2493 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.6768 -0.2076 -2.1391 26 1 1.6766 -1.7490 -1.2490 27 1 5.1461 0.7285 -1.0192 28 1 3.9170 1.1638 -2.2308 29 1 3.5423 1.2962 -0.4958 30 1 3.7163 -2.4705 -2.4987 31 1 3.7171 -0.9286 -3.3880 32 1 5.1700 -1.4429 -2.4982 33 1 3.7157 -2.4710 0.0004 34 1 5.1694 -1.4442 0.0006 35 1 3.7143 -2.4713 2.4987 36 1 5.1683 -1.4447 2.4995 37 1 3.8869 -1.1740 4.4969 38 1 3.4308 1.3956 1.1823 39 1 5.3365 4.1325 1.2545 40 1 1.6765 -1.7488 1.2494 41 1 1.6766 -0.2072 2.1392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080898192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:30 Heat of formation + Delta-G solvation = -45.792348 kcal Electronic energy + Delta-G solvation = -19678.573899 eV Core-core repulsion = 16979.481368 eV Total energy + Delta-G solvation = -2699.092531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.71859 -36.04347 -33.88214 -33.43388 -31.67431 -28.79358 -26.53008 -25.89999 -25.74230 -24.86131 -23.51770 -20.07100 -18.98250 -17.76469 -17.03590 -16.44891 -15.05288 -14.64000 -14.22599 -13.89118 -13.63417 -13.29066 -12.98385 -12.79320 -12.51919 -12.19757 -11.96693 -11.65322 -11.59550 -11.17803 -11.01039 -10.88933 -10.76503 -10.63805 -10.53134 -10.18780 -9.99128 -9.82875 -9.59678 -9.54870 -9.46003 -9.31981 -8.97949 -8.48517 -6.65079 -5.66085 -2.89395 3.47260 3.52670 3.55184 4.65873 4.95999 5.22981 5.27309 5.39750 5.60708 5.62970 5.70595 5.79558 5.86884 5.99310 6.02280 6.09289 6.13632 6.16799 6.24980 6.29623 6.32862 6.36136 6.38360 6.45634 6.53836 6.61766 6.71444 6.84658 6.88790 6.97208 7.12345 7.14574 7.23225 7.44082 7.78394 7.97507 8.37063 8.52075 9.63873 10.21415 10.57583 11.56862 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.010294 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.286005 B = 2719.277863 C = 3106.681664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.084 0.916 4 C -0.096 4.096 5 C -0.053 4.053 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.108 4.108 9 C 0.204 3.796 10 C 0.073 3.927 11 O -0.553 6.553 12 N -0.698 5.698 13 C -0.216 4.216 14 H 0.065 0.935 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.895 3.105 18 H -0.284 1.284 19 H -0.294 1.294 20 H -0.295 1.295 21 C -0.102 4.102 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.008 0.992 29 H 0.097 0.903 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.020 0.980 36 H 0.042 0.958 37 H 0.358 0.642 38 H 0.387 0.613 39 H 0.252 0.748 40 H 0.051 0.949 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 -9.944 -2.656 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.102 0.898 4 C -0.134 4.134 5 C -0.053 4.053 6 C -0.190 4.190 7 C -0.195 4.195 8 C -0.148 4.148 9 C 0.112 3.888 10 C -0.007 4.007 11 O -0.355 6.355 12 N -0.341 5.341 13 C -0.348 4.348 14 H 0.083 0.917 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.728 3.272 18 H -0.209 1.209 19 H -0.222 1.222 20 H -0.222 1.222 21 C -0.140 4.140 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.027 0.973 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.202 0.798 38 H 0.224 0.776 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.812 -9.535 -3.100 11.589 hybrid contribution 1.295 -0.009 0.479 1.381 sum -4.517 -9.544 -2.621 10.880 Atomic orbital electron populations 1.21826 0.96410 1.00794 1.01097 1.21190 0.94001 1.01247 0.94928 0.89803 1.21592 0.95613 0.99072 0.97106 1.20363 0.93896 0.97588 0.93429 1.22300 1.04007 0.93627 0.99101 1.21879 1.00775 0.99105 0.97740 1.21946 1.00750 0.96699 0.95410 1.19557 0.91684 0.87405 0.90113 1.22728 0.97726 0.92815 0.87450 1.86616 1.76680 1.57149 1.15015 1.42608 1.04925 0.99969 1.86592 1.19019 0.83798 0.91270 1.40711 0.91674 1.24580 0.96702 0.95711 1.03738 1.69647 1.32149 0.98024 1.58125 0.86285 0.86242 0.77605 0.77096 1.20919 1.22165 1.22232 1.21627 0.95435 0.99342 0.97609 0.93010 0.93293 0.93495 0.93017 0.93335 0.91484 0.97283 0.88454 0.93928 0.93507 0.93086 0.94098 0.92087 0.96139 0.94003 0.79775 0.77627 0.93820 0.93069 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.19 37.16 0.34 -1.67 16 2 C -0.10 -1.58 2.37 -90.62 -0.21 -1.80 16 3 H 0.08 1.63 5.25 -51.93 -0.27 1.35 16 4 C -0.10 -1.52 4.01 -26.73 -0.11 -1.63 16 5 C -0.05 -0.92 0.77 -154.51 -0.12 -1.03 16 6 C -0.13 -2.78 6.85 37.16 0.25 -2.52 16 7 C -0.14 -2.10 8.44 37.16 0.31 -1.79 16 8 C -0.11 -1.94 3.56 -26.74 -0.10 -2.04 16 9 C 0.20 3.96 0.53 -131.84 -0.07 3.89 16 10 C 0.07 1.35 5.70 37.16 0.21 1.56 16 11 O -0.55 -10.56 12.85 -35.23 -0.45 -11.01 16 12 N -0.70 -16.37 2.53 -47.25 -0.12 -16.49 16 13 C -0.22 -5.64 6.55 -15.06 -0.10 -5.74 16 14 H 0.07 1.70 6.69 -52.49 -0.35 1.35 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -27.27 13.06 55.49 0.72 -26.55 16 17 Si 0.90 22.29 29.55 -169.99 -5.02 17.26 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 21 C -0.10 -1.79 3.93 -26.75 -0.11 -1.90 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.58 6.51 -51.93 -0.34 1.24 16 28 H 0.01 0.17 8.08 -51.93 -0.42 -0.25 16 29 H 0.10 2.24 3.25 -51.93 -0.17 2.07 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.19 7.54 -51.93 -0.39 0.80 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.04 0.82 7.03 -51.93 -0.37 0.46 16 37 H 0.36 5.07 9.12 45.56 0.42 5.48 16 38 H 0.39 9.93 5.44 -40.82 -0.22 9.71 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.28 7.68 -51.93 -0.40 0.88 16 LS Contribution 301.19 15.07 4.54 4.54 Total: -1.00 -28.86 301.19 -6.41 -35.28 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.30 Total: 12.05 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 0.22 Total: -15.08 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.60 Total: -43.04 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.45 Total: -11.01 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.86 -6.41 -35.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080898192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.516 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds