Wall clock time and date at job start Mon Mar 30 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52726 * 1 3 3 H 1.11802 * 105.74955 * 2 1 4 4 C 1.51354 * 111.96252 * 115.63565 * 2 1 3 5 5 C 1.51764 * 115.34006 * 83.35591 * 4 2 1 6 6 C 1.53098 * 111.03270 * 278.75362 * 5 4 2 7 7 C 1.54908 * 107.33124 * 162.46743 * 5 4 2 8 8 C 1.51818 * 113.11723 * 44.30135 * 5 4 2 9 9 C 1.51913 * 114.31461 * 312.31915 * 8 5 4 10 10 C 1.54611 * 107.71199 * 168.94987 * 9 8 5 11 11 O 1.42903 * 109.46827 * 179.73077 * 10 9 8 12 12 N 1.46426 * 111.22609 * 286.01812 * 9 8 5 13 13 C 1.36938 * 119.99547 * 182.55495 * 12 9 8 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 9 15 15 C 1.38815 * 119.99821 * 179.97438 * 13 12 9 16 16 N 1.31625 * 119.99700 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00119 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47215 * 90.00042 * 17 15 13 19 19 H 1.48501 * 109.46856 * 210.00484 * 17 15 13 20 20 H 1.48502 * 109.47297 * 330.00024 * 17 15 13 21 21 C 1.51544 * 111.72891 * 244.61159 * 2 1 3 22 22 H 1.08998 * 109.47670 * 304.36347 * 1 2 3 23 23 H 1.09002 * 109.46900 * 64.36471 * 1 2 3 24 24 H 1.09003 * 109.47068 * 184.36043 * 1 2 3 25 25 H 1.10210 * 108.92509 * 320.91012 * 4 2 1 26 26 H 1.10237 * 108.87080 * 205.69026 * 4 2 1 27 27 H 1.09005 * 109.47679 * 186.73413 * 6 5 4 28 28 H 1.09002 * 109.47400 * 306.73015 * 6 5 4 29 29 H 1.09000 * 109.47918 * 66.72925 * 6 5 4 30 30 H 1.09005 * 109.46945 * 298.13159 * 7 5 4 31 31 H 1.08991 * 109.47197 * 58.12603 * 7 5 4 32 32 H 1.09000 * 109.47166 * 178.13188 * 7 5 4 33 33 H 1.09985 * 108.91890 * 190.32580 * 8 5 4 34 34 H 1.09985 * 108.92226 * 74.32477 * 8 5 4 35 35 H 1.08997 * 109.46812 * 299.71903 * 10 9 8 36 36 H 1.08997 * 109.47366 * 59.72585 * 10 9 8 37 37 H 0.96698 * 113.99610 * 180.02562 * 11 10 9 38 38 H 0.96995 * 120.00093 * 2.27683 * 12 9 8 39 39 H 0.97000 * 119.99481 * 180.02562 * 16 15 13 40 40 H 1.09946 * 109.16716 * 157.76416 * 21 2 1 41 41 H 1.09958 * 109.14124 * 41.38411 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5273 0.0000 0.0000 3 1 1.8307 1.0760 0.0000 4 6 2.0933 -0.6073 1.2655 5 6 2.1891 -2.1219 1.2727 6 6 0.8392 -2.7562 1.6183 7 6 3.1699 -2.5169 2.4047 8 6 2.7414 -2.6904 -0.0222 9 6 2.1004 -2.1240 -1.2776 10 6 2.9489 -2.5815 -2.4864 11 8 2.3738 -2.0729 -3.6917 12 7 0.7513 -2.6590 -1.4717 13 6 0.0281 -2.3071 -2.5800 14 1 0.4527 -1.6347 -3.3108 15 6 -1.2507 -2.8148 -2.7643 16 7 -1.7683 -3.6339 -1.8734 17 14 -2.2375 -2.3343 -4.2758 18 1 -1.9654 -3.2986 -5.3717 19 1 -3.6857 -2.3530 -3.9479 20 1 -1.8458 -0.9690 -4.7093 21 6 2.0883 -0.6036 -1.2718 22 1 -0.3634 0.5800 0.8483 23 1 -0.3633 0.4446 -0.9265 24 1 -0.3633 -1.0247 0.0781 25 1 1.4766 -0.2890 2.1216 26 1 3.0985 -0.1906 1.4423 27 1 0.9626 -3.8330 1.7339 28 1 0.4660 -2.3312 2.5501 29 1 0.1278 -2.5560 0.8171 30 1 4.1550 -2.1006 2.1937 31 1 2.8057 -2.1249 3.3543 32 1 3.2394 -3.6032 2.4627 33 1 2.6094 -3.7823 -0.0172 34 1 3.8245 -2.5034 -0.0605 35 1 3.9654 -2.2025 -2.3809 36 1 2.9692 -3.6706 -2.5247 37 1 2.8552 -2.3217 -4.4926 38 1 0.3714 -3.2658 -0.8172 39 1 -2.6617 -3.9889 -2.0024 40 1 3.1149 -0.2397 -1.4217 41 1 1.4978 -0.2505 -2.1295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080898198.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:33 Heat of formation + Delta-G solvation = -56.485529 kcal Electronic energy + Delta-G solvation = -19685.095657 eV Core-core repulsion = 16985.539435 eV Total energy + Delta-G solvation = -2699.556222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.40468 -36.16000 -33.90741 -33.18231 -31.68110 -28.73416 -26.86211 -26.09216 -25.70463 -24.89425 -23.37423 -20.40507 -19.27742 -17.22272 -17.01980 -16.07790 -15.13854 -14.51634 -14.02029 -13.92430 -13.77958 -13.45902 -13.03663 -12.81554 -12.48852 -12.23988 -11.99189 -11.76023 -11.35990 -11.21838 -11.01875 -10.86119 -10.68091 -10.57804 -10.46856 -10.37553 -10.02311 -9.94131 -9.77328 -9.52026 -9.34529 -9.24811 -8.75423 -8.54487 -6.71533 -5.53610 -2.77753 3.56505 3.62433 3.64156 4.77384 4.88202 5.07643 5.19879 5.33781 5.57039 5.61307 5.68203 5.74927 5.86124 5.92650 5.99229 6.04419 6.08549 6.11408 6.17326 6.21565 6.27191 6.32278 6.33972 6.46122 6.50675 6.57801 6.63615 6.74979 6.78378 6.96267 7.01158 7.04920 7.13209 7.29742 7.52744 8.20721 8.47911 8.67920 9.78882 10.31909 10.68603 11.70274 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025024 B = 0.009703 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.671058 B = 2884.973136 C = 3159.606414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 H 0.036 0.964 4 C -0.091 4.091 5 C -0.045 4.045 6 C -0.151 4.151 7 C -0.146 4.146 8 C -0.100 4.100 9 C 0.214 3.786 10 C 0.067 3.933 11 O -0.539 6.539 12 N -0.706 5.706 13 C -0.196 4.196 14 H 0.093 0.907 15 C -0.027 4.027 16 N -0.945 5.945 17 Si 0.900 3.100 18 H -0.297 1.297 19 H -0.298 1.298 20 H -0.285 1.285 21 C -0.107 4.107 22 H 0.029 0.971 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.016 0.984 36 H 0.033 0.967 37 H 0.348 0.652 38 H 0.383 0.617 39 H 0.249 0.751 40 H 0.034 0.966 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.463 3.701 5.671 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 H 0.054 0.946 4 C -0.128 4.128 5 C -0.046 4.046 6 C -0.209 4.209 7 C -0.204 4.204 8 C -0.138 4.138 9 C 0.122 3.878 10 C -0.014 4.014 11 O -0.341 6.341 12 N -0.347 5.347 13 C -0.327 4.327 14 H 0.111 0.889 15 C -0.221 4.221 16 N -0.596 5.596 17 Si 0.733 3.267 18 H -0.225 1.225 19 H -0.225 1.225 20 H -0.211 1.211 21 C -0.146 4.146 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.051 0.949 37 H 0.192 0.808 38 H 0.219 0.781 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.966 4.041 5.963 12.297 hybrid contribution -0.195 -0.286 -1.064 1.119 sum 9.771 3.755 4.899 11.558 Atomic orbital electron populations 1.21814 0.94455 1.03801 0.99594 1.20491 0.96497 0.97381 0.94295 0.94558 1.21197 0.99853 0.94221 0.97569 1.20140 0.95587 0.94863 0.93963 1.22166 0.97254 0.99411 1.02031 1.22459 0.98679 1.00876 0.98361 1.21358 0.98738 1.00175 0.93480 1.19322 0.86872 0.92056 0.89577 1.23388 0.93995 0.96566 0.87451 1.86891 1.54869 1.77293 1.15049 1.42599 1.11624 1.54497 1.26004 1.19600 0.94375 1.20995 0.97738 0.88934 1.24666 0.97883 1.01168 0.98372 1.69658 1.16638 1.37402 1.35949 0.86265 0.79383 0.77775 0.83291 1.22480 1.22499 1.21115 1.21561 0.98826 0.96924 0.97335 0.95229 0.93106 0.89870 0.93018 0.93609 0.93374 0.93795 0.89251 0.93372 0.93203 0.93040 0.92182 0.92732 0.96583 0.94905 0.80772 0.78130 0.94161 0.94750 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.89 37.02 0.33 -2.35 16 2 C -0.07 -1.18 2.51 -92.33 -0.23 -1.41 16 3 H 0.04 0.58 8.30 -50.30 -0.42 0.16 16 4 C -0.09 -1.38 4.12 -28.19 -0.12 -1.50 16 5 C -0.05 -0.70 0.74 -154.68 -0.11 -0.81 16 6 C -0.15 -2.56 7.58 37.21 0.28 -2.28 16 7 C -0.15 -1.86 7.94 38.16 0.30 -1.56 16 8 C -0.10 -1.64 3.38 -27.88 -0.09 -1.74 16 9 C 0.21 4.14 0.74 -132.05 -0.10 4.04 16 10 C 0.07 1.23 5.75 38.00 0.22 1.45 16 11 O -0.54 -10.56 9.76 -35.23 -0.34 -10.91 16 12 N -0.71 -16.67 3.44 -47.45 -0.16 -16.83 16 13 C -0.20 -5.23 8.04 -15.06 -0.12 -5.35 16 14 H 0.09 2.53 5.00 -52.49 -0.26 2.26 16 15 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 16 N -0.95 -28.29 13.06 55.49 0.72 -27.56 16 17 Si 0.90 23.14 29.55 -169.99 -5.02 18.12 16 18 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 19 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 C -0.11 -2.01 3.81 -27.95 -0.11 -2.12 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 1.04 8.03 -51.93 -0.42 0.62 16 24 H 0.08 1.82 4.84 -51.93 -0.25 1.57 16 25 H 0.05 0.76 7.89 -51.24 -0.40 0.35 16 26 H 0.05 0.63 7.91 -51.22 -0.41 0.23 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.67 8.04 -51.93 -0.42 0.26 16 29 H 0.09 1.82 3.68 -51.93 -0.19 1.63 16 30 H 0.05 0.56 7.99 -51.93 -0.41 0.15 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.02 8.13 -51.37 -0.42 0.61 16 34 H 0.05 0.80 7.80 -51.37 -0.40 0.40 16 35 H 0.02 0.26 8.06 -51.93 -0.42 -0.16 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.35 5.17 9.12 45.56 0.42 5.59 16 38 H 0.38 9.67 5.56 -40.82 -0.23 9.44 16 39 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.03 0.59 8.05 -51.39 -0.41 0.18 16 41 H 0.07 1.61 6.39 -51.38 -0.33 1.29 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -29.72 299.92 -6.35 -36.07 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.22 Total: 11.09 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 0.16 Total: -14.50 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.56 Total: -44.39 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.34 Total: -10.91 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.72 -6.35 -36.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080898198.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.417 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds