Wall clock time and date at job start Mon Mar 30 2020 05:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47591 * 2 1 4 4 C 1.52998 * 109.47133 * 120.00059 * 2 1 3 5 5 C 1.52995 * 109.47564 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47343 * 59.99309 * 5 4 2 7 7 C 1.52998 * 109.47564 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46973 * 299.99625 * 5 4 2 9 9 C 1.52998 * 109.46997 * 60.00020 * 8 5 4 10 10 C 1.53002 * 109.47586 * 180.02562 * 9 8 5 11 11 O 1.42888 * 109.47444 * 184.99775 * 10 9 8 12 12 N 1.46500 * 109.47557 * 59.99953 * 9 8 5 13 13 C 1.36936 * 119.99954 * 64.63413 * 12 9 8 14 14 H 1.07994 * 119.99704 * 0.02562 * 13 12 9 15 15 C 1.38809 * 120.00030 * 179.72685 * 13 12 9 16 16 N 1.31619 * 120.00043 * 180.27665 * 15 13 12 17 17 Si 1.86796 * 120.00140 * 0.27893 * 15 13 12 18 18 H 1.48497 * 109.47485 * 89.99797 * 17 15 13 19 19 H 1.48497 * 109.47145 * 209.99974 * 17 15 13 20 20 H 1.48504 * 109.47251 * 329.99781 * 17 15 13 21 21 C 1.53003 * 109.47121 * 300.00019 * 9 8 5 22 22 H 1.08990 * 109.46904 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46788 * 300.00728 * 1 2 3 24 24 H 1.08999 * 109.46653 * 60.00185 * 1 2 3 25 25 H 1.09008 * 109.46947 * 299.99877 * 4 2 1 26 26 H 1.08998 * 109.47650 * 59.99569 * 4 2 1 27 27 H 1.08999 * 109.46736 * 72.89841 * 6 5 4 28 28 H 1.09004 * 109.47519 * 192.89701 * 6 5 4 29 29 H 1.09002 * 109.47211 * 312.90042 * 6 5 4 30 30 H 1.08998 * 109.47650 * 59.99589 * 7 5 4 31 31 H 1.08999 * 109.47356 * 180.02562 * 7 5 4 32 32 H 1.09001 * 109.46640 * 299.99324 * 7 5 4 33 33 H 1.08995 * 109.47236 * 300.00269 * 8 5 4 34 34 H 1.08993 * 109.47228 * 179.97438 * 8 5 4 35 35 H 1.09007 * 109.46597 * 305.00334 * 10 9 8 36 36 H 1.08996 * 109.46972 * 64.99241 * 10 9 8 37 37 H 0.96699 * 114.00097 * 179.97438 * 11 10 9 38 38 H 0.97004 * 120.00048 * 244.63996 * 12 9 8 39 39 H 0.97000 * 119.99940 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.47412 * 179.97438 * 21 9 8 41 41 H 1.09003 * 109.47109 * 300.00079 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2490 6 6 4.0806 0.7204 1.2485 7 6 4.0800 -1.4437 2.4979 8 6 4.0795 -1.4436 -0.0002 9 6 3.5696 -0.7224 -1.2495 10 6 4.0785 -1.4444 -2.4988 11 8 3.7005 -0.7065 -3.6626 12 7 4.0584 0.6587 -1.2499 13 6 5.4012 0.9096 -1.3461 14 1 6.0996 0.0895 -1.4220 15 6 5.8639 2.2183 -1.3522 16 7 7.1541 2.4597 -1.4501 17 14 4.6557 3.6369 -1.2214 18 1 4.4475 3.9797 0.2083 19 1 5.1990 4.8176 -1.9395 20 1 3.3598 3.2411 -1.8293 21 6 2.0395 -0.7217 -1.2492 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.6767 -0.2074 2.1392 26 1 1.6767 -1.7489 1.2493 27 1 3.9171 1.1639 2.2307 28 1 5.1462 0.7286 1.0190 29 1 3.5423 1.2962 0.4957 30 1 3.7163 -2.4712 2.4978 31 1 5.1700 -1.4437 2.4979 32 1 3.7171 -0.9299 3.3880 33 1 3.7157 -2.4711 0.0000 34 1 5.1694 -1.4437 -0.0007 35 1 5.1648 -1.5234 -2.4555 36 1 3.6432 -2.4426 -2.5441 37 1 3.9911 -1.1067 -4.4936 38 1 3.4310 1.3953 -1.1820 39 1 7.4775 3.3742 -1.4540 40 1 1.6762 -0.2075 -2.1390 41 1 1.6758 -1.7493 -1.2489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080898211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:46 Heat of formation + Delta-G solvation = -40.751289 kcal Electronic energy + Delta-G solvation = -19762.304651 eV Core-core repulsion = 17063.430717 eV Total energy + Delta-G solvation = -2698.873934 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.89076 -36.10514 -33.98753 -33.57616 -31.73045 -29.49738 -26.64823 -26.02538 -25.90806 -24.94232 -23.19040 -20.21184 -19.06424 -17.76736 -17.72615 -16.48804 -15.00527 -14.73423 -14.43459 -14.07495 -13.59641 -13.37844 -13.09801 -12.70371 -12.60530 -12.45452 -12.09161 -11.99869 -11.68699 -11.30818 -11.16979 -10.99751 -10.89278 -10.72459 -10.55622 -10.21546 -10.14236 -9.96723 -9.70458 -9.64610 -9.51955 -9.40060 -9.03734 -8.57525 -6.94900 -5.66614 -2.96982 3.44450 3.48458 3.52627 4.69009 4.85772 5.07874 5.12905 5.25800 5.38303 5.51154 5.62326 5.68447 5.74874 5.86975 5.93403 5.96001 6.01499 6.04914 6.13012 6.17334 6.19076 6.25582 6.26807 6.38877 6.41073 6.52149 6.56929 6.68682 6.70780 6.80941 6.93247 6.98110 7.10350 7.21154 7.65949 8.07242 8.34583 8.52907 9.31101 10.04651 10.25954 11.52350 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.011464 C = 0.010485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.929157 B = 2441.782693 C = 2669.778292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.098 4.098 5 C -0.051 4.051 6 C -0.138 4.138 7 C -0.138 4.138 8 C -0.108 4.108 9 C 0.211 3.789 10 C 0.075 3.925 11 O -0.553 6.553 12 N -0.724 5.724 13 C -0.217 4.217 14 H 0.087 0.913 15 C 0.005 3.995 16 N -0.939 5.939 17 Si 0.871 3.129 18 H -0.284 1.284 19 H -0.295 1.295 20 H -0.277 1.277 21 C -0.107 4.107 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.014 0.986 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.023 0.977 37 H 0.361 0.639 38 H 0.363 0.637 39 H 0.256 0.744 40 H 0.066 0.934 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.625 -8.776 3.255 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.136 4.136 5 C -0.051 4.051 6 C -0.195 4.195 7 C -0.195 4.195 8 C -0.148 4.148 9 C 0.119 3.881 10 C -0.005 4.005 11 O -0.356 6.356 12 N -0.368 5.368 13 C -0.347 4.347 14 H 0.105 0.895 15 C -0.189 4.189 16 N -0.588 5.588 17 Si 0.702 3.298 18 H -0.211 1.211 19 H -0.222 1.222 20 H -0.203 1.203 21 C -0.145 4.145 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.205 0.795 38 H 0.199 0.801 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.657 -8.377 3.689 14.048 hybrid contribution -0.406 0.694 -0.386 0.892 sum -11.063 -7.683 3.303 13.868 Atomic orbital electron populations 1.21833 0.96144 1.01123 1.01114 1.21194 0.94259 1.00674 0.95318 0.90708 1.21617 0.95683 0.99368 0.96883 1.20324 0.93744 0.97127 0.93895 1.22334 1.04470 0.94128 0.98589 1.21863 1.01096 0.99148 0.97390 1.21935 1.01342 0.96729 0.94790 1.19531 0.91400 0.86436 0.90702 1.22655 0.98566 0.92131 0.87146 1.86584 1.80600 1.53094 1.15284 1.42947 1.04960 1.00543 1.88398 1.18845 0.82094 0.93057 1.40733 0.89480 1.24527 0.95189 0.96505 1.02724 1.69680 1.11605 1.19126 1.58356 0.86758 0.81491 0.83800 0.77711 1.21111 1.22214 1.20323 1.21716 0.95522 0.99799 0.97445 0.93150 0.93200 0.93037 0.92875 0.92914 0.96682 0.90310 0.90573 0.93721 0.92746 0.93475 0.93715 0.91409 0.93648 0.95903 0.79536 0.80137 0.93354 0.91550 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 2 C -0.10 -1.49 2.37 -90.62 -0.21 -1.70 16 3 H 0.07 1.33 5.25 -51.93 -0.27 1.06 16 4 C -0.10 -1.45 4.01 -26.73 -0.11 -1.56 16 5 C -0.05 -0.84 0.77 -154.51 -0.12 -0.96 16 6 C -0.14 -2.75 6.86 37.16 0.25 -2.49 16 7 C -0.14 -2.02 8.44 37.16 0.31 -1.70 16 8 C -0.11 -1.88 3.56 -26.73 -0.10 -1.98 16 9 C 0.21 3.95 0.53 -131.82 -0.07 3.88 16 10 C 0.07 1.36 5.59 37.16 0.21 1.56 16 11 O -0.55 -10.42 12.96 -35.23 -0.46 -10.87 16 12 N -0.72 -16.36 2.26 -47.23 -0.11 -16.46 16 13 C -0.22 -5.78 7.07 -15.06 -0.11 -5.89 16 14 H 0.09 2.51 6.98 -52.49 -0.37 2.14 16 15 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 16 N -0.94 -29.16 13.97 55.49 0.78 -28.38 16 17 Si 0.87 22.34 27.09 -169.99 -4.60 17.74 16 18 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 20 H -0.28 -6.86 6.51 56.52 0.37 -6.49 16 21 C -0.11 -1.76 3.97 -26.73 -0.11 -1.87 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.01 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.08 1.82 6.51 -51.93 -0.34 1.48 16 29 H 0.08 1.61 2.56 -51.93 -0.13 1.48 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16 35 H 0.05 0.89 7.22 -51.93 -0.38 0.52 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.36 5.07 9.12 45.56 0.42 5.48 16 38 H 0.36 8.46 3.39 -40.82 -0.14 8.33 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.07 1.18 7.82 -51.93 -0.41 0.77 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 297.20 15.07 4.48 4.48 Total: -1.00 -30.41 297.20 -5.95 -36.36 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.24 Total: 11.31 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 0.20 Total: -14.17 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.67 Total: -44.84 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.46 Total: -10.87 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.60 Total: 17.74 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.41 -5.95 -36.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080898211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.388 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds