Wall clock time and date at job start Mon Mar 30 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 H 1.09004 * 109.47406 * 2 1 4 4 C 1.50706 * 109.47419 * 120.00031 * 2 1 3 5 5 H 1.07995 * 120.00313 * 119.99480 * 4 2 1 6 6 C 1.37871 * 119.99540 * 299.72873 * 4 2 1 7 7 N 1.31523 * 119.99870 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00447 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47244 * 89.99913 * 8 6 4 10 10 H 1.48499 * 109.47539 * 210.00681 * 8 6 4 11 11 H 1.48509 * 109.47077 * 330.00127 * 8 6 4 12 12 N 1.46900 * 109.47490 * 239.99827 * 2 1 3 13 13 C 1.46904 * 110.99952 * 84.99671 * 12 2 1 14 14 C 1.53003 * 109.46964 * 180.02562 * 13 12 2 15 15 O 1.42898 * 109.47124 * 65.00765 * 14 13 12 16 16 C 1.52993 * 109.47344 * 305.00502 * 14 13 12 17 17 C 1.53005 * 109.47019 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47293 * 59.99765 * 17 16 14 19 19 C 1.52998 * 109.47147 * 300.00391 * 18 17 16 20 20 H 1.08997 * 109.47413 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.46856 * 299.99952 * 19 18 17 22 22 C 1.53002 * 109.46615 * 185.00216 * 14 13 12 23 23 H 1.09004 * 109.47406 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47716 * 300.00156 * 1 2 3 25 25 H 1.09002 * 109.47226 * 60.00023 * 1 2 3 26 26 H 0.96998 * 119.99689 * 179.97438 * 7 6 4 27 27 H 1.00907 * 110.99833 * 321.05375 * 12 2 1 28 28 H 1.08994 * 109.47310 * 300.00533 * 13 12 2 29 29 H 1.09000 * 109.46653 * 60.00833 * 13 12 2 30 30 H 0.96705 * 114.00020 * 300.00182 * 15 14 13 31 31 H 1.09001 * 109.47292 * 299.99502 * 16 14 13 32 32 H 1.08997 * 109.47546 * 59.99868 * 16 14 13 33 33 H 1.08997 * 109.47273 * 179.97438 * 17 16 14 34 34 H 1.09004 * 109.47021 * 299.99675 * 17 16 14 35 35 H 1.09005 * 109.46669 * 60.00184 * 18 17 16 36 36 H 1.09002 * 109.47141 * 180.02562 * 18 17 16 37 37 H 1.08995 * 109.47616 * 48.76574 * 21 19 18 38 38 H 1.09006 * 109.47139 * 168.76882 * 21 19 18 39 39 H 1.09002 * 109.46887 * 288.76379 * 21 19 18 40 40 H 1.08992 * 109.47511 * 299.99953 * 22 14 13 41 41 H 1.09001 * 109.47463 * 60.00840 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.7038 -0.2361 2.4827 7 7 2.1419 -0.8563 3.5566 8 14 0.6367 1.2875 2.6541 9 1 -0.7926 0.8878 2.7031 10 1 0.9937 2.0038 3.9050 11 1 0.8608 2.1823 1.4902 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5950 -0.5333 -3.5744 15 8 1.6493 -1.5387 -3.9441 16 6 3.9363 -1.1913 -3.2448 17 6 4.4492 -1.9466 -4.4726 18 6 4.6333 -0.9674 -5.6337 19 6 3.2920 -0.3092 -5.9633 20 1 3.4229 0.3880 -6.7908 21 6 2.2795 -1.3857 -6.3596 22 6 2.7789 0.4456 -4.7359 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.9111 -0.5223 4.4375 27 1 1.4494 -1.4979 -1.4100 28 1 1.0870 0.6163 -2.5525 29 1 2.7588 1.0461 -2.1182 30 1 1.4829 -2.1951 -3.2537 31 1 4.6578 -0.4245 -2.9629 32 1 3.8053 -1.8886 -2.4174 33 1 5.4050 -2.4151 -4.2379 34 1 3.7279 -2.7136 -4.7549 35 1 5.3546 -0.2005 -5.3513 36 1 4.9982 -1.5056 -6.5085 37 1 2.2948 -2.1881 -5.6221 38 1 1.2817 -0.9487 -6.4003 39 1 2.5405 -1.7871 -7.3388 40 1 1.8234 0.9144 -4.9708 41 1 3.5004 1.2125 -4.4540 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082403705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:10 Heat of formation + Delta-G solvation = -63.970575 kcal Electronic energy + Delta-G solvation = -18676.378832 eV Core-core repulsion = 15976.498034 eV Total energy + Delta-G solvation = -2699.880798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.89137 -36.39633 -34.94037 -32.52968 -31.55916 -30.86875 -28.66706 -26.43692 -25.20145 -24.20492 -22.29536 -20.68485 -20.20313 -18.71017 -16.95520 -16.22225 -15.99425 -14.83358 -14.69101 -14.28491 -14.16082 -13.72728 -13.40355 -13.14349 -12.67381 -12.53113 -12.32601 -12.16126 -11.96607 -11.77907 -11.60150 -11.39503 -11.02576 -10.91114 -10.76612 -10.54636 -10.37926 -10.24338 -10.14224 -9.72937 -9.54172 -9.33423 -9.05776 -8.58033 -7.47239 -6.06149 -4.03596 3.24265 3.34293 3.36943 4.38965 4.39502 4.67733 4.83732 4.98683 5.05758 5.23917 5.24473 5.39967 5.50914 5.54120 5.58783 5.74768 5.81987 5.88743 5.98806 6.04180 6.08614 6.15215 6.16365 6.19246 6.23266 6.30182 6.37912 6.45343 6.48738 6.57672 6.64671 6.73544 6.82306 7.08390 7.68511 7.85375 7.88926 8.24413 8.66687 9.04572 9.56600 11.07379 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043921 B = 0.005635 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.362199 B = 4967.997140 C = 5199.804693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.184 3.816 3 H 0.033 0.967 4 C -0.498 4.498 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.667 5.667 13 C 0.030 3.970 14 C 0.140 3.860 15 O -0.553 6.553 16 C -0.133 4.133 17 C -0.120 4.120 18 C -0.114 4.114 19 C -0.085 4.085 20 H 0.059 0.941 21 C -0.146 4.146 22 C -0.100 4.100 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.026 0.974 26 H 0.263 0.737 27 H 0.325 0.675 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.368 0.632 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 0.707 -17.600 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.075 3.925 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.297 5.297 13 C -0.100 4.100 14 C 0.099 3.901 15 O -0.360 6.360 16 C -0.170 4.170 17 C -0.157 4.157 18 C -0.152 4.152 19 C -0.104 4.104 20 H 0.078 0.922 21 C -0.203 4.203 22 C -0.138 4.138 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.143 0.857 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.217 0.783 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.971 1.141 -17.785 17.930 hybrid contribution -1.631 0.811 0.659 1.937 sum 0.339 1.952 -17.126 17.240 Atomic orbital electron populations 1.22839 1.01471 1.00881 0.98865 1.19633 0.88569 0.95055 0.89287 0.94960 1.20969 1.31264 1.13662 0.87729 0.90046 1.24938 0.95959 0.96601 0.95908 1.69886 1.45971 1.40282 0.97838 0.86897 0.80555 0.84015 0.76865 1.20794 1.22412 1.19577 1.60692 1.57454 1.08739 1.02836 1.22644 0.99230 0.96604 0.91543 1.21184 0.88372 0.87932 0.92565 1.86643 1.63892 1.41649 1.43793 1.22027 0.96454 1.00752 0.97816 1.21569 1.00642 0.98344 0.95146 1.21569 0.96712 0.98671 0.98202 1.20993 0.95454 0.97278 0.96646 0.92230 1.22057 0.97890 1.00126 1.00198 1.21562 1.01181 0.96791 0.94273 0.92731 0.93687 0.95527 0.92692 0.85741 0.95607 0.90998 0.78348 0.91601 0.89811 0.92629 0.91289 0.92460 0.92606 0.89196 0.93327 0.94851 0.91783 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 8.65 37.15 0.32 -3.56 16 2 C 0.18 4.22 2.16 -68.87 -0.15 4.08 16 3 H 0.03 0.79 6.84 -51.93 -0.36 0.43 16 4 C -0.50 -13.81 9.42 -34.44 -0.32 -14.13 16 5 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 8 Si 0.89 21.92 24.39 -169.99 -4.15 17.77 16 9 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 10 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 12 N -0.67 -12.65 5.25 -107.95 -0.57 -13.21 16 13 C 0.03 0.49 4.69 -3.82 -0.02 0.47 16 14 C 0.14 1.88 0.79 -90.62 -0.07 1.81 16 15 O -0.55 -7.19 8.76 -35.23 -0.31 -7.50 16 16 C -0.13 -1.79 4.70 -26.73 -0.13 -1.92 16 17 C -0.12 -1.39 5.59 -26.73 -0.15 -1.54 16 18 C -0.11 -1.23 5.45 -26.73 -0.15 -1.37 16 19 C -0.09 -0.95 3.19 -90.64 -0.29 -1.24 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 21 C -0.15 -1.68 7.81 37.16 0.29 -1.39 16 22 C -0.10 -1.23 4.58 -26.75 -0.12 -1.35 16 23 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 24 H 0.04 1.02 3.31 -51.93 -0.17 0.85 16 25 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.33 5.69 7.05 -39.29 -0.28 5.41 16 28 H 0.03 0.43 7.44 -51.93 -0.39 0.04 16 29 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 30 H 0.37 4.31 7.62 45.56 0.35 4.65 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.27 7.47 -51.93 -0.39 0.88 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.81 5.94 -51.93 -0.31 0.50 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.10 3.79 -51.93 -0.20 0.90 16 38 H 0.05 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -29.30 298.03 -7.01 -36.31 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.37 Total: 7.18 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -0.88 Total: -18.32 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.21 Total: -39.94 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.31 Total: -7.50 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.15 Total: 17.77 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.30 -7.01 -36.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082403705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.660 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds