Wall clock time and date at job start Mon Mar 30 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 H 1.09004 * 109.47406 * 2 1 4 4 C 1.50706 * 109.47419 * 120.00031 * 2 1 3 5 5 H 1.07995 * 120.00313 * 119.99480 * 4 2 1 6 6 C 1.37871 * 119.99540 * 299.72873 * 4 2 1 7 7 N 1.31523 * 119.99870 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00447 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47244 * 89.99913 * 8 6 4 10 10 H 1.48499 * 109.47539 * 210.00681 * 8 6 4 11 11 H 1.48509 * 109.47077 * 330.00127 * 8 6 4 12 12 N 1.46900 * 109.47490 * 239.99827 * 2 1 3 13 13 C 1.46904 * 110.99952 * 84.99671 * 12 2 1 14 14 C 1.53003 * 109.46964 * 180.02562 * 13 12 2 15 15 O 1.42898 * 109.47124 * 65.00765 * 14 13 12 16 16 C 1.52993 * 109.47344 * 305.00502 * 14 13 12 17 17 C 1.53005 * 109.47019 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47293 * 59.99765 * 17 16 14 19 19 C 1.52998 * 109.47147 * 300.00391 * 18 17 16 20 20 H 1.08997 * 109.47413 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.46856 * 299.99952 * 19 18 17 22 22 C 1.53002 * 109.46615 * 185.00216 * 14 13 12 23 23 H 1.09004 * 109.47406 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47716 * 300.00156 * 1 2 3 25 25 H 1.09002 * 109.47226 * 60.00023 * 1 2 3 26 26 H 0.96998 * 119.99689 * 179.97438 * 7 6 4 27 27 H 1.00907 * 110.99833 * 321.05375 * 12 2 1 28 28 H 1.08994 * 109.47310 * 300.00533 * 13 12 2 29 29 H 1.09000 * 109.46653 * 60.00833 * 13 12 2 30 30 H 0.96705 * 114.00020 * 300.00182 * 15 14 13 31 31 H 1.09001 * 109.47292 * 299.99502 * 16 14 13 32 32 H 1.08997 * 109.47546 * 59.99868 * 16 14 13 33 33 H 1.08997 * 109.47273 * 179.97438 * 17 16 14 34 34 H 1.09004 * 109.47021 * 299.99675 * 17 16 14 35 35 H 1.09005 * 109.46669 * 60.00184 * 18 17 16 36 36 H 1.09002 * 109.47141 * 180.02562 * 18 17 16 37 37 H 1.08995 * 109.47616 * 48.76574 * 21 19 18 38 38 H 1.09006 * 109.47139 * 168.76882 * 21 19 18 39 39 H 1.09002 * 109.46887 * 288.76379 * 21 19 18 40 40 H 1.08992 * 109.47511 * 299.99953 * 22 14 13 41 41 H 1.09001 * 109.47463 * 60.00840 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.7038 -0.2361 2.4827 7 7 2.1419 -0.8563 3.5566 8 14 0.6367 1.2875 2.6541 9 1 -0.7926 0.8878 2.7031 10 1 0.9937 2.0038 3.9050 11 1 0.8608 2.1823 1.4902 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5950 -0.5333 -3.5744 15 8 1.6493 -1.5387 -3.9441 16 6 3.9363 -1.1913 -3.2448 17 6 4.4492 -1.9466 -4.4726 18 6 4.6333 -0.9674 -5.6337 19 6 3.2920 -0.3092 -5.9633 20 1 3.4229 0.3880 -6.7908 21 6 2.2795 -1.3857 -6.3596 22 6 2.7789 0.4456 -4.7359 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.9111 -0.5223 4.4375 27 1 1.4494 -1.4979 -1.4100 28 1 1.0870 0.6163 -2.5525 29 1 2.7588 1.0461 -2.1182 30 1 1.4829 -2.1951 -3.2537 31 1 4.6578 -0.4245 -2.9629 32 1 3.8053 -1.8886 -2.4174 33 1 5.4050 -2.4151 -4.2379 34 1 3.7279 -2.7136 -4.7549 35 1 5.3546 -0.2005 -5.3513 36 1 4.9982 -1.5056 -6.5085 37 1 2.2948 -2.1881 -5.6221 38 1 1.2817 -0.9487 -6.4003 39 1 2.5405 -1.7871 -7.3388 40 1 1.8234 0.9144 -4.9708 41 1 3.5004 1.2125 -4.4540 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082403705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:10 Heat of formation + Delta-G solvation = -84.553436 kcal Electronic energy + Delta-G solvation = -18677.271372 eV Core-core repulsion = 15976.498034 eV Total energy + Delta-G solvation = -2700.773338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95197 -37.90455 -36.13662 -34.43163 -32.74269 -32.14654 -30.11717 -27.36011 -27.15632 -25.60281 -23.28936 -22.15352 -21.67970 -19.66560 -18.88489 -17.51753 -17.16360 -16.66645 -16.08461 -15.53373 -15.28265 -14.97954 -14.77421 -14.52537 -14.23851 -13.91158 -13.73776 -13.55749 -13.16098 -12.99811 -12.89186 -12.69625 -12.55555 -12.37170 -12.01814 -11.83355 -11.78453 -11.49173 -11.31191 -11.27408 -11.15626 -10.77925 -10.65181 -10.30947 -9.03558 -8.27302 -6.29306 1.28572 1.34191 1.43782 2.31342 3.07035 3.33491 3.41771 3.85188 3.92875 3.97880 4.22680 4.37192 4.41121 4.45716 4.53131 4.57313 4.59108 4.65727 4.73235 4.80323 4.84663 4.94713 4.98118 5.06760 5.13820 5.18662 5.23332 5.27262 5.35999 5.46133 5.51777 5.52777 5.60412 5.67502 5.89524 5.99601 6.65069 6.70552 6.78493 6.88227 7.35760 8.90001 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043921 B = 0.005635 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.362199 B = 4967.997140 C = 5199.804693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.188 3.812 3 H 0.024 0.976 4 C -0.500 4.500 5 H 0.038 0.962 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.299 1.299 11 H -0.253 1.253 12 N -0.672 5.672 13 C 0.033 3.967 14 C 0.150 3.850 15 O -0.552 6.552 16 C -0.130 4.130 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.083 4.083 20 H 0.073 0.927 21 C -0.143 4.143 22 C -0.101 4.101 23 H 0.057 0.943 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.265 0.735 27 H 0.334 0.666 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.373 0.627 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 1.820 -19.757 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.078 3.922 3 H 0.042 0.958 4 C -0.539 4.539 5 H 0.057 0.943 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.227 1.227 11 H -0.177 1.177 12 N -0.303 5.303 13 C -0.096 4.096 14 C 0.109 3.891 15 O -0.359 6.359 16 C -0.168 4.168 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.102 4.102 20 H 0.092 0.908 21 C -0.200 4.200 22 C -0.139 4.139 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.222 0.778 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.163 2.245 -19.978 20.137 hybrid contribution -1.310 0.371 1.295 1.879 sum -0.147 2.617 -18.683 18.866 Atomic orbital electron populations 1.22703 0.99570 1.01476 0.99712 1.19391 0.89884 0.93995 0.88923 0.95792 1.21257 1.30183 1.12432 0.90027 0.94324 1.25775 0.97531 0.99928 0.95489 1.70044 1.48097 1.42501 0.98518 0.85843 0.79104 0.80166 0.77118 1.19400 1.22702 1.17736 1.60496 1.57593 1.09392 1.02864 1.22697 0.99315 0.96225 0.91411 1.21080 0.88095 0.88026 0.91921 1.86658 1.63703 1.41604 1.43963 1.21963 0.96505 1.00197 0.98105 1.21529 1.00718 0.98399 0.94625 1.21561 0.96651 0.98561 0.98145 1.21001 0.95386 0.97338 0.96446 0.90836 1.22012 0.97541 0.99886 1.00565 1.21592 1.01483 0.96650 0.94140 0.92389 0.94717 0.92596 0.92644 0.84745 0.95361 0.91719 0.77781 0.92449 0.91974 0.92247 0.91254 0.92110 0.91245 0.90044 0.94185 0.93772 0.91828 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.09 8.65 71.98 0.62 -6.47 16 2 C 0.19 8.49 2.16 44.17 0.10 8.58 16 3 H 0.02 1.14 6.84 -2.39 -0.02 1.12 16 4 C -0.50 -28.28 9.42 25.60 0.24 -28.04 16 5 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 6 C 0.01 0.55 5.45 84.65 0.46 1.01 16 7 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 8 Si 0.95 44.90 24.39 68.60 1.67 46.57 16 9 H -0.27 -12.04 6.87 99.48 0.68 -11.35 16 10 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 11 H -0.25 -11.15 6.53 99.48 0.65 -10.50 16 12 N -0.67 -25.11 5.25 -495.45 -2.60 -27.71 16 13 C 0.03 1.03 4.69 86.30 0.40 1.44 16 14 C 0.15 3.79 0.79 -10.79 -0.01 3.78 16 15 O -0.55 -13.42 8.76 -148.98 -1.31 -14.73 16 16 C -0.13 -3.40 4.70 30.59 0.14 -3.26 16 17 C -0.12 -2.50 5.59 30.60 0.17 -2.33 16 18 C -0.11 -2.11 5.45 30.59 0.17 -1.94 16 19 C -0.08 -1.63 3.19 -10.81 -0.03 -1.66 16 20 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 21 C -0.14 -2.94 7.81 71.98 0.56 -2.38 16 22 C -0.10 -2.24 4.58 30.58 0.14 -2.10 16 23 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 24 H 0.03 1.47 3.31 -2.39 -0.01 1.46 16 25 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 26 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.33 11.44 7.05 -89.69 -0.63 10.80 16 28 H 0.03 0.87 7.44 -2.39 -0.02 0.85 16 29 H 0.06 2.10 8.06 -2.39 -0.02 2.08 16 30 H 0.37 8.24 7.62 -74.05 -0.56 7.68 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.89 7.47 -2.39 -0.02 1.87 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.51 5.94 -2.38 -0.01 1.49 16 35 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.82 3.79 -2.39 -0.01 1.81 16 38 H 0.04 0.88 8.09 -2.38 -0.02 0.86 16 39 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -63.09 298.03 0.76 -62.33 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.27 Total: 26.15 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 2.97 Total: -33.36 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.30 Total: -86.96 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -1.31 Total: -14.73 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.67 Total: 46.57 kcal Total: -63.09 0.76 -62.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082403705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.222 kcal (2) G-P(sol) polarization free energy of solvation -63.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds