Wall clock time and date at job start Mon Mar 30 2020 04:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46957 * 2 1 4 4 H 1.08998 * 109.46768 * 54.35214 * 3 2 1 5 5 C 1.50703 * 109.46878 * 174.34503 * 3 2 1 6 6 H 1.07996 * 119.99247 * 120.00100 * 5 3 2 7 7 C 1.37869 * 120.00176 * 300.00287 * 5 3 2 8 8 N 1.31519 * 120.00381 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00159 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46939 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47618 * 120.00160 * 9 7 5 12 12 H 1.48502 * 109.47504 * 240.00099 * 9 7 5 13 13 N 1.46899 * 109.47368 * 294.34889 * 3 2 1 14 14 C 1.46902 * 110.99892 * 153.33738 * 13 3 2 15 15 C 1.52999 * 109.47079 * 174.65501 * 14 13 3 16 16 H 1.09005 * 109.46985 * 305.00076 * 15 14 13 17 17 C 1.53001 * 109.47050 * 64.99951 * 15 14 13 18 18 C 1.52999 * 109.47050 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47368 * 300.00269 * 18 17 15 20 20 C 1.53001 * 109.47255 * 59.99857 * 19 18 17 21 21 C 1.52995 * 109.47368 * 185.00220 * 15 14 13 22 22 H 1.09005 * 109.46950 * 299.99877 * 21 15 14 23 23 O 1.42896 * 109.47213 * 59.99773 * 21 15 14 24 24 H 1.09003 * 109.47029 * 59.12122 * 1 2 3 25 25 H 1.08999 * 109.47140 * 179.11731 * 1 2 3 26 26 H 1.08994 * 109.47373 * 299.12289 * 1 2 3 27 27 H 1.08994 * 109.46901 * 240.00243 * 2 1 3 28 28 H 1.08994 * 109.46735 * 120.00254 * 2 1 3 29 29 H 0.96995 * 120.00637 * 180.02562 * 8 7 5 30 30 H 1.00899 * 110.99926 * 29.38663 * 13 3 2 31 31 H 1.08997 * 109.46867 * 54.65800 * 14 13 3 32 32 H 1.08997 * 109.47331 * 294.65178 * 14 13 3 33 33 H 1.09008 * 109.47263 * 299.99655 * 17 15 14 34 34 H 1.08994 * 109.47156 * 59.99719 * 17 15 14 35 35 H 1.09005 * 109.46985 * 60.00125 * 18 17 15 36 36 H 1.09006 * 109.47281 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.47094 * 180.02562 * 19 18 17 38 38 H 1.09005 * 109.46950 * 299.99877 * 19 18 17 39 39 H 1.08998 * 109.46909 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.46901 * 60.00145 * 20 19 18 41 41 H 0.96701 * 114.00004 * 180.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1400 6 1 4.1540 1.8865 -0.6313 7 6 4.1299 0.8831 1.2526 8 7 3.3828 0.3448 2.1916 9 14 5.9898 0.8866 1.4265 10 1 6.5963 1.5472 0.2428 11 1 6.3707 1.6266 2.6563 12 1 6.4811 -0.5118 1.5182 13 7 1.6649 2.0946 -1.2618 14 6 1.5458 3.5484 -1.0879 15 6 1.2862 4.2048 -2.4454 16 1 2.0692 3.9134 -3.1455 17 6 -0.0724 3.7485 -2.9810 18 6 -0.3323 4.4053 -4.3382 19 6 -0.3325 5.9267 -4.1768 20 6 1.0261 6.3830 -3.6412 21 6 1.2862 5.7262 -2.2846 22 1 0.5032 6.0176 -1.5845 23 8 2.5551 6.1524 -1.7844 24 1 -0.3633 0.5274 -0.8820 25 1 -0.3633 -1.0275 -0.0158 26 1 -0.3634 0.5001 0.8977 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7974 -0.0501 2.9745 30 1 0.8112 1.7035 -1.6310 31 1 2.4709 3.9408 -0.6657 32 1 0.7173 3.7672 -0.4143 33 1 -0.0724 2.6645 -3.0957 34 1 -0.8554 4.0397 -2.2809 35 1 0.4507 4.1144 -5.0385 36 1 -1.3001 4.0799 -4.7200 37 1 -0.5181 6.3946 -5.1436 38 1 -1.1155 6.2177 -3.4764 39 1 1.0257 7.4669 -3.5258 40 1 1.8090 6.0921 -4.3415 41 1 2.6269 7.1083 -1.6572 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082994891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:56 Heat of formation + Delta-G solvation = -82.025044 kcal Electronic energy + Delta-G solvation = -18325.827323 eV Core-core repulsion = 15625.163624 eV Total energy + Delta-G solvation = -2700.663699 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.16526 -36.20697 -35.34535 -32.94395 -31.50473 -29.82757 -29.26654 -26.44539 -24.28278 -22.75100 -22.12722 -20.64569 -19.67032 -19.36735 -17.08725 -16.19147 -15.38007 -14.92325 -14.61561 -14.31030 -13.98042 -13.64716 -13.45837 -12.85085 -12.76788 -12.68132 -12.09754 -11.98325 -11.70598 -11.37968 -11.13230 -11.07584 -10.89755 -10.78864 -10.59174 -10.48542 -10.08870 -10.06088 -9.85293 -9.71821 -9.58024 -9.27123 -8.96588 -8.25690 -7.08971 -5.87798 -3.90811 3.37883 3.45272 3.52318 4.34030 4.53405 4.72062 4.76670 5.01019 5.19429 5.24582 5.39253 5.42330 5.51359 5.56567 5.60970 5.75196 5.85675 6.00315 6.06942 6.13479 6.18776 6.20267 6.21259 6.30375 6.38886 6.44373 6.48043 6.78533 6.89698 6.92965 7.15689 7.28582 7.59373 7.85734 7.86944 8.03044 8.42888 8.50338 8.88754 9.18292 9.73852 11.17781 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.006407 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.128457 B = 4369.046908 C = 5196.053528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.000 1.000 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.686 5.686 14 C 0.077 3.923 15 C -0.076 4.076 16 H 0.082 0.918 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.150 4.150 21 C 0.111 3.889 22 H 0.049 0.951 23 O -0.557 6.557 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.099 0.901 29 H 0.257 0.743 30 H 0.313 0.687 31 H 0.082 0.918 32 H 0.007 0.993 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 9.877 -9.997 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.318 5.318 14 C -0.052 4.052 15 C -0.095 4.095 16 H 0.101 0.899 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.153 4.153 20 C -0.188 4.188 21 C 0.051 3.949 22 H 0.067 0.933 23 O -0.362 6.362 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.025 0.975 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.455 9.160 -10.073 15.522 hybrid contribution -0.033 0.668 0.722 0.984 sum -7.488 9.828 -9.351 15.495 Atomic orbital electron populations 1.21879 0.99711 0.99450 0.99633 1.21777 0.91146 1.00523 1.03026 1.19132 0.95480 0.89849 0.84479 0.98220 1.21280 0.91359 1.35761 1.04096 0.91985 1.24959 0.98043 0.95808 0.95906 1.69886 1.34491 1.39997 1.09622 0.86501 0.85975 0.77453 0.77845 1.19761 1.21303 1.21237 1.60709 1.36721 1.02068 1.32296 1.21771 1.00325 0.89839 0.93313 1.21159 0.97539 0.91470 0.99315 0.89919 1.21584 0.96646 1.00901 0.96014 1.21565 1.01467 0.94842 0.97926 1.21472 0.96855 0.96364 1.00636 1.22263 0.98242 0.99719 0.98585 1.21809 0.85134 0.95278 0.92659 0.93335 1.86662 1.34786 1.27172 1.87546 0.94698 0.94455 0.93928 0.94116 0.88257 0.93283 0.86925 0.89948 0.97459 0.90857 0.92436 0.91798 0.92168 0.92148 0.92133 0.92251 0.91150 0.78508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.77 37.16 0.36 -2.60 16 2 C -0.13 -3.06 5.35 -26.73 -0.14 -3.20 16 3 C 0.22 5.63 2.02 -68.86 -0.14 5.49 16 4 H 0.00 0.00 7.83 -51.93 -0.41 -0.40 16 5 C -0.49 -13.96 8.62 -34.44 -0.30 -14.25 16 6 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -26.29 11.29 55.43 0.63 -25.67 16 9 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.69 -15.12 6.25 -107.95 -0.67 -15.79 16 14 C 0.08 1.55 4.83 -3.82 -0.02 1.54 16 15 C -0.08 -1.21 2.14 -90.62 -0.19 -1.40 16 16 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 17 C -0.11 -1.51 4.97 -26.73 -0.13 -1.64 16 18 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 19 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 20 C -0.15 -1.63 5.54 -26.76 -0.15 -1.77 16 21 C 0.11 1.50 2.90 -26.76 -0.08 1.42 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 O -0.56 -8.26 12.56 -35.23 -0.44 -8.70 16 24 H 0.03 0.62 6.44 -51.93 -0.33 0.28 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 2.70 5.94 -51.93 -0.31 2.39 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.31 6.21 4.94 -39.29 -0.19 6.02 16 31 H 0.08 1.92 7.37 -51.93 -0.38 1.54 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.07 1.02 6.81 -51.92 -0.35 0.67 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.37 3.63 9.08 45.56 0.41 4.05 16 LS Contribution 314.61 15.07 4.74 4.74 Total: -1.00 -30.57 314.61 -8.58 -39.14 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.61 Total: 6.83 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -1.20 Total: -17.78 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.05 Total: -41.46 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.44 Total: -8.70 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.57 -8.58 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.884 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds