Wall clock time and date at job start Mon Mar 30 2020 05:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47179 * 2 1 4 4 C 1.53004 * 109.46978 * 120.00329 * 2 1 3 5 5 C 1.52998 * 109.47289 * 59.99889 * 4 2 1 6 6 C 1.53003 * 109.47382 * 60.00034 * 5 4 2 7 7 C 1.53004 * 109.46881 * 300.00216 * 6 5 4 8 8 O 1.42903 * 109.47171 * 299.99915 * 7 6 5 9 9 C 1.52995 * 109.46989 * 179.97438 * 7 6 5 10 10 N 1.46904 * 109.47297 * 60.00190 * 9 7 6 11 11 C 1.46893 * 111.00554 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47544 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46849 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00270 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99294 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00431 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99743 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47332 * 60.00013 * 17 15 13 19 19 H 1.48500 * 109.46906 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47039 * 299.99621 * 17 15 13 21 21 C 1.52998 * 109.47289 * 59.99727 * 7 6 5 22 22 H 1.09006 * 109.47500 * 191.23359 * 1 2 3 23 23 H 1.09000 * 109.47325 * 311.23447 * 1 2 3 24 24 H 1.08998 * 109.46934 * 71.23486 * 1 2 3 25 25 H 1.09000 * 109.47143 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.47023 * 299.99962 * 4 2 1 27 27 H 1.09000 * 109.47153 * 300.00146 * 5 4 2 28 28 H 1.09002 * 109.47557 * 180.02562 * 5 4 2 29 29 H 1.08991 * 109.47434 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.47089 * 59.99506 * 6 5 4 31 31 H 0.96697 * 113.99596 * 299.99803 * 8 7 6 32 32 H 1.09002 * 109.47380 * 179.97438 * 9 7 6 33 33 H 1.09004 * 109.47671 * 300.00130 * 9 7 6 34 34 H 1.00902 * 110.99782 * 56.03722 * 10 9 7 35 35 H 1.09005 * 109.47279 * 300.00197 * 11 10 9 36 36 H 1.09002 * 109.47320 * 59.99824 * 11 10 9 37 37 H 1.08994 * 109.46764 * 300.00261 * 12 11 10 38 38 H 1.09002 * 109.46765 * 59.99718 * 12 11 10 39 39 H 0.96995 * 120.00599 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47557 * 179.97438 * 21 7 6 41 41 H 1.09000 * 109.47153 * 59.99853 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0399 -2.8851 -0.0001 7 6 1.5299 -2.1638 -1.2493 8 8 0.1009 -2.1637 -1.2493 9 6 2.0404 -2.8846 -2.4985 10 7 1.5511 -4.2698 -2.4989 11 6 2.0220 -4.9942 -3.6868 12 6 1.4939 -6.4298 -3.6515 13 6 1.9766 -7.1727 -4.8707 14 1 2.5975 -6.6711 -5.5980 15 6 1.6245 -8.4926 -5.0578 16 7 0.8671 -9.1030 -4.1727 17 14 2.2234 -9.4137 -6.5685 18 1 3.7082 -9.4334 -6.5801 19 1 1.7096 -10.8066 -6.5348 20 1 1.7277 -8.7333 -7.7919 21 6 2.0400 -0.7213 -1.2493 22 1 -0.3634 -1.0080 0.2002 23 1 -0.3634 0.6774 0.7728 24 1 -0.3633 0.3306 -0.9730 25 1 3.1300 -0.7210 1.2495 26 1 1.6766 -0.2075 2.1392 27 1 0.4399 -2.1638 1.2492 28 1 1.8929 -2.6776 2.1394 29 1 1.6762 -3.9126 -0.0003 30 1 3.1299 -2.8851 -0.0001 31 1 -0.2924 -3.0471 -1.2494 32 1 1.6768 -2.3711 -3.3885 33 1 3.1304 -2.8844 -2.4984 34 1 0.5446 -4.2977 -2.4341 35 1 1.6583 -4.4949 -4.5849 36 1 3.1119 -5.0086 -3.6954 37 1 1.8580 -6.9288 -2.7536 38 1 0.4040 -6.4158 -3.6428 39 1 0.6197 -10.0316 -4.3042 40 1 1.6770 -0.2075 -2.1395 41 1 3.1300 -0.7213 -1.2492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083469784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:40 Heat of formation + Delta-G solvation = -80.744319 kcal Electronic energy + Delta-G solvation = -18068.965084 eV Core-core repulsion = 15368.356922 eV Total energy + Delta-G solvation = -2700.608162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.00904 -36.23698 -34.80065 -32.93227 -31.69094 -30.93706 -28.86321 -26.53923 -25.23140 -23.26861 -22.40885 -20.74187 -20.53005 -18.82370 -16.49543 -16.32049 -16.28424 -15.13565 -14.52088 -14.43794 -14.38591 -13.82708 -13.44383 -13.23780 -13.05947 -12.41989 -12.31909 -12.05523 -11.99048 -11.91158 -11.57292 -11.08917 -11.01736 -10.92851 -10.87139 -10.59977 -10.48641 -10.37386 -10.05630 -9.81503 -9.60457 -9.24804 -9.13739 -8.36481 -7.87801 -6.01097 -4.03879 3.32735 3.37112 3.39462 4.26113 4.40016 4.54594 4.72290 4.85095 4.90236 5.10489 5.27491 5.34813 5.37747 5.40101 5.45117 5.63826 5.71874 5.73428 5.85246 5.93496 5.96238 6.04089 6.05391 6.12046 6.26949 6.29743 6.33905 6.40107 6.42040 6.48893 6.73509 6.94491 7.39827 7.68185 7.73820 7.80993 7.90520 8.04954 8.41506 9.02991 9.60028 11.10274 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.055499 B = 0.004048 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.394428 B = 6915.092225 C = 7014.269959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.061 0.939 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.134 4.134 7 C 0.140 3.860 8 O -0.551 6.551 9 C 0.031 3.969 10 N -0.688 5.688 11 C 0.067 3.933 12 C 0.026 3.974 13 C -0.523 4.523 14 H 0.053 0.947 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.101 4.101 22 H 0.090 0.910 23 H 0.033 0.967 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.370 0.630 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.331 0.669 35 H 0.015 0.985 36 H 0.058 0.942 37 H 0.025 0.975 38 H 0.013 0.987 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 16.757 9.489 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.079 0.921 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.172 4.172 7 C 0.099 3.901 8 O -0.358 6.358 9 C -0.099 4.099 10 N -0.319 5.319 11 C -0.061 4.061 12 C -0.011 4.011 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.139 4.139 22 H 0.108 0.892 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.218 0.782 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.387 16.997 9.923 19.730 hybrid contribution -0.193 -0.792 -1.643 1.835 sum 1.194 16.204 8.280 18.236 Atomic orbital electron populations 1.22059 0.94404 1.03475 1.00396 1.21006 0.96997 0.98071 0.94339 0.92104 1.21568 1.00056 0.96139 0.97400 1.21559 1.01536 0.95052 0.97565 1.22055 1.01078 1.00321 0.93765 1.21174 0.80877 0.94477 0.93540 1.86664 1.19199 1.33246 1.96722 1.22616 1.00745 0.90006 0.96515 1.60646 1.15538 1.11913 1.43840 1.22155 0.99446 0.96756 0.87773 1.19060 0.96093 0.88577 0.97401 1.21136 1.31820 0.96320 1.06957 0.92842 1.24994 0.95128 0.97636 0.96518 1.69954 1.36435 1.11733 1.35122 0.86646 0.79144 0.78823 0.83305 1.20214 1.21237 1.20289 1.21578 0.99965 0.93902 0.98414 0.89214 0.94750 0.93242 0.92463 0.92482 0.91144 0.92550 0.90038 0.91675 0.78165 0.95227 0.90833 0.85136 0.96635 0.92357 0.95665 0.96835 0.92910 0.91632 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 7.81 37.16 0.29 -1.29 16 2 C -0.09 -0.88 3.20 -90.62 -0.29 -1.16 16 3 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -1.11 5.45 -26.73 -0.15 -1.26 16 5 C -0.12 -1.26 5.59 -26.73 -0.15 -1.41 16 6 C -0.13 -1.61 4.76 -26.73 -0.13 -1.73 16 7 C 0.14 1.69 0.78 -90.62 -0.07 1.62 16 8 O -0.55 -6.68 8.73 -35.23 -0.31 -6.99 16 9 C 0.03 0.45 4.86 -3.82 -0.02 0.43 16 10 N -0.69 -11.61 5.72 -113.78 -0.65 -12.26 16 11 C 0.07 1.39 5.62 -3.83 -0.02 1.37 16 12 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 13 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.10 -1.11 4.58 -26.73 -0.12 -1.23 16 22 H 0.09 1.03 3.79 -51.93 -0.20 0.84 16 23 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.76 5.94 -51.93 -0.31 0.46 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.10 7.60 -51.93 -0.39 0.70 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.37 4.05 7.46 45.56 0.34 4.39 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.33 5.29 7.14 -39.29 -0.28 5.01 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 311.11 15.07 4.69 4.69 Total: -1.00 -29.47 311.11 -8.49 -37.96 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.72 Total: 3.81 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.21 Total: -17.75 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.09 Total: -38.39 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.31 Total: -6.99 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.47 -8.49 -37.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083469784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.786 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds