Wall clock time and date at job start Mon Mar 30 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47133 * 2 1 4 4 C 1.53005 * 109.46643 * 119.99312 * 2 1 3 5 5 C 1.53005 * 109.46809 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.46995 * 300.00172 * 5 4 2 7 7 C 1.52991 * 109.47463 * 60.00294 * 6 5 4 8 8 O 1.42902 * 109.47294 * 59.99734 * 7 6 5 9 9 C 1.52997 * 109.47463 * 180.02562 * 7 6 5 10 10 N 1.46903 * 109.46955 * 304.99512 * 9 7 6 11 11 C 1.46896 * 111.00106 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47256 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 11 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.52992 * 109.47571 * 239.99135 * 2 1 3 22 22 H 1.09003 * 109.47021 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47436 * 300.00346 * 1 2 3 24 24 H 1.09003 * 109.46839 * 60.00881 * 1 2 3 25 25 H 1.08997 * 109.47484 * 300.00313 * 4 2 1 26 26 H 1.08997 * 109.47516 * 60.00493 * 4 2 1 27 27 H 1.09003 * 109.47142 * 60.00245 * 5 4 2 28 28 H 1.09003 * 109.47006 * 179.97438 * 5 4 2 29 29 H 1.08997 * 109.47046 * 299.99583 * 6 5 4 30 30 H 1.09007 * 109.46711 * 180.02562 * 6 5 4 31 31 H 0.96698 * 113.99939 * 60.00438 * 8 7 6 32 32 H 1.08999 * 109.47273 * 184.99835 * 9 7 6 33 33 H 1.09000 * 109.47530 * 64.99579 * 9 7 6 34 34 H 1.00897 * 111.00198 * 303.95322 * 10 9 7 35 35 H 1.09004 * 109.46774 * 60.00282 * 11 10 9 36 36 H 1.09000 * 109.47723 * 300.00671 * 11 10 9 37 37 H 1.09004 * 109.47066 * 60.00378 * 12 11 10 38 38 H 1.08994 * 109.47405 * 300.00209 * 12 11 10 39 39 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 40 40 H 1.09010 * 109.46912 * 60.00433 * 21 2 1 41 41 H 1.08994 * 109.47598 * 300.00580 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5699 -0.7206 1.2498 6 6 4.0804 -1.4416 0.0006 7 6 3.5706 -0.7205 -1.2487 8 8 4.0465 0.6270 -1.2485 9 6 4.0806 -1.4419 -2.4978 10 7 5.5446 -1.5473 -2.4389 11 6 6.0709 -2.2366 -3.6246 12 6 7.5951 -2.3275 -3.5271 13 6 8.1350 -3.0341 -4.7437 14 1 7.4588 -3.3831 -5.5101 15 6 9.4930 -3.2296 -4.8815 16 7 9.9646 -3.8414 -5.9458 17 14 10.6627 -2.6254 -3.5562 18 1 10.8623 -3.6960 -2.5466 19 1 11.9684 -2.2750 -4.1708 20 1 10.0874 -1.4251 -2.8979 21 6 2.0401 -0.7214 -1.2490 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6765 -0.2073 2.1393 26 1 1.6766 -1.7488 1.2495 27 1 3.9329 0.3072 1.2499 28 1 3.9332 -1.2340 2.1401 29 1 3.7175 -2.4694 0.0005 30 1 5.1705 -1.4416 0.0012 31 1 5.0104 0.7036 -1.2483 32 1 3.7923 -0.8790 -3.3856 33 1 3.6460 -2.4404 -2.5437 34 1 5.9686 -0.6381 -2.3310 35 1 5.7964 -1.6796 -4.5204 36 1 5.6501 -3.2406 -3.6779 37 1 7.8693 -2.8847 -2.6313 38 1 8.0163 -1.3236 -3.4736 39 1 10.9199 -3.9792 -6.0425 40 1 1.6768 -0.2076 -2.1392 41 1 1.6768 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083469788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:46 Heat of formation + Delta-G solvation = -107.596103 kcal Electronic energy + Delta-G solvation = -17896.104812 eV Core-core repulsion = 15194.332270 eV Total energy + Delta-G solvation = -2701.772543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.75019 -37.54988 -36.24893 -34.85054 -33.07265 -32.45706 -30.74672 -27.33547 -26.89283 -24.70489 -22.96901 -22.26065 -21.36105 -20.63852 -18.96665 -17.55172 -16.99745 -16.43421 -16.17704 -16.04498 -15.25751 -15.06973 -14.85130 -14.61088 -14.54462 -14.01315 -13.54290 -13.42254 -13.16885 -13.07226 -12.84720 -12.80054 -12.67083 -12.17683 -12.01223 -11.83381 -11.73831 -11.64119 -11.55135 -11.43140 -11.28746 -10.80712 -10.77833 -10.52107 -9.37662 -8.30840 -6.35974 1.37887 1.39140 1.51615 2.36396 3.04876 3.15088 3.33659 3.78275 3.85524 3.91619 4.11107 4.28321 4.32607 4.42401 4.48391 4.54978 4.63080 4.66468 4.75125 4.78686 4.84319 4.91585 4.94435 5.01645 5.11295 5.16524 5.23970 5.25587 5.38429 5.42227 5.45259 5.47568 5.52249 5.61961 5.66776 6.03400 6.23176 6.44984 6.72678 6.81786 7.29090 8.85987 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047671 B = 0.004306 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.216405 B = 6500.784070 C = 6799.872429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.063 0.937 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.131 4.131 7 C 0.144 3.856 8 O -0.567 6.567 9 C 0.033 3.967 10 N -0.683 5.683 11 C 0.087 3.913 12 C -0.003 4.003 13 C -0.537 4.537 14 H 0.029 0.971 15 C 0.004 3.996 16 N -0.952 5.952 17 Si 0.957 3.043 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.244 1.244 21 C -0.100 4.100 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.381 0.619 32 H 0.027 0.973 33 H 0.077 0.923 34 H 0.339 0.661 35 H 0.013 0.987 36 H 0.055 0.945 37 H 0.024 0.976 38 H 0.021 0.979 39 H 0.267 0.733 40 H 0.061 0.939 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.838 8.750 16.203 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.081 0.919 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.169 4.169 7 C 0.103 3.897 8 O -0.374 6.374 9 C -0.097 4.097 10 N -0.315 5.315 11 C -0.042 4.042 12 C -0.040 4.040 13 C -0.575 4.575 14 H 0.048 0.952 15 C -0.193 4.193 16 N -0.592 5.592 17 Si 0.780 3.220 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.167 1.167 21 C -0.137 4.137 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.353 8.252 16.502 25.329 hybrid contribution 1.333 0.340 -1.027 1.717 sum -16.020 8.592 15.475 23.873 Atomic orbital electron populations 1.21826 0.94425 1.02121 1.01897 1.20988 0.95710 0.99445 0.94099 0.91886 1.21596 0.95192 1.00640 0.97459 1.21466 0.95969 1.00628 0.97125 1.22003 1.01431 0.99293 0.94148 1.21197 0.94458 0.81363 0.92636 1.86483 1.27311 1.26582 1.97049 1.22689 0.88469 1.00944 0.97561 1.60546 1.05064 1.25092 1.40771 1.21622 0.95511 0.97540 0.89519 1.19421 0.93029 0.96304 0.95287 1.21430 0.92746 1.37483 1.05855 0.95220 1.26046 1.00420 0.94719 0.98130 1.70071 1.14332 1.44354 1.30489 0.85558 0.77398 0.80180 0.78851 1.19237 1.21055 1.16741 1.21593 0.91699 1.01619 0.98838 0.92233 0.92043 0.92855 0.91406 0.91781 0.92199 0.91701 0.91626 0.91298 0.77039 0.95476 0.90482 0.84259 0.96830 0.92599 0.95780 0.96065 0.92418 0.92073 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.19 71.98 0.66 -1.42 16 2 C -0.08 -1.47 2.57 -10.79 -0.03 -1.50 16 3 H 0.06 1.30 7.68 -2.39 -0.02 1.28 16 4 C -0.11 -1.81 5.20 30.60 0.16 -1.65 16 5 C -0.11 -2.09 5.78 30.59 0.18 -1.91 16 6 C -0.13 -2.77 4.70 30.59 0.14 -2.63 16 7 C 0.14 3.17 0.79 -10.78 -0.01 3.16 16 8 O -0.57 -12.90 11.62 -148.98 -1.73 -14.63 16 9 C 0.03 0.87 4.89 86.30 0.42 1.29 16 10 N -0.68 -20.77 5.52 -513.90 -2.84 -23.61 16 11 C 0.09 3.43 5.62 86.30 0.49 3.92 16 12 C 0.00 -0.12 4.30 29.85 0.13 0.01 16 13 C -0.54 -31.31 9.66 25.60 0.25 -31.06 16 14 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 15 C 0.00 0.21 5.47 84.66 0.46 0.68 16 16 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 17 Si 0.96 44.42 27.47 68.60 1.88 46.30 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 21 C -0.10 -1.95 4.23 30.61 0.13 -1.82 16 22 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.17 7.68 -2.39 -0.02 1.15 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.62 7.48 -2.38 -0.02 1.61 16 31 H 0.38 7.27 7.62 -74.06 -0.56 6.71 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.34 9.36 7.32 -89.70 -0.66 8.71 16 35 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.02 1.11 7.58 -2.38 -0.02 1.09 16 38 H 0.02 0.95 7.19 -2.39 -0.02 0.94 16 39 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -65.21 316.42 0.30 -64.91 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.29 Total: 19.91 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 2.98 Total: -32.94 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -2.54 Total: -83.56 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.73 Total: -14.63 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -65.21 0.30 -64.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083469788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.688 kcal (2) G-P(sol) polarization free energy of solvation -65.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds