Wall clock time and date at job start Mon Mar 30 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 N 1.46900 * 109.47637 * 120.00254 * 2 1 3 5 5 C 1.46891 * 111.00035 * 74.40034 * 4 2 1 6 6 C 1.50702 * 109.47226 * 70.90706 * 5 4 2 7 7 H 1.07994 * 119.99751 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99735 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00021 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99788 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47246 * 59.99695 * 10 8 6 12 12 H 1.48493 * 109.47025 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46848 * 299.99782 * 10 8 6 14 14 C 1.46906 * 110.99637 * 310.44506 * 4 2 1 15 15 C 1.52998 * 109.47011 * 201.66278 * 14 4 2 16 16 O 1.42897 * 110.43428 * 293.79506 * 15 14 4 17 17 C 1.54885 * 110.60093 * 56.41708 * 15 14 4 18 18 C 1.54883 * 102.74951 * 156.67335 * 17 15 14 19 19 C 1.54259 * 104.19893 * 322.05888 * 18 17 15 20 20 C 1.53875 * 106.60049 * 23.60699 * 19 18 17 21 21 H 1.09000 * 109.47475 * 304.88051 * 1 2 3 22 22 H 1.08996 * 109.47755 * 64.88435 * 1 2 3 23 23 H 1.09002 * 109.47130 * 184.88029 * 1 2 3 24 24 H 1.09002 * 109.47337 * 240.00377 * 2 1 3 25 25 H 1.08997 * 109.47560 * 183.82554 * 3 2 1 26 26 H 1.09010 * 109.46885 * 303.82475 * 3 2 1 27 27 H 1.08998 * 109.47126 * 63.81832 * 3 2 1 28 28 H 1.08999 * 109.46978 * 190.90569 * 5 4 2 29 29 H 1.08999 * 109.47211 * 310.90262 * 5 4 2 30 30 H 0.97001 * 119.99552 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.46692 * 81.65799 * 14 4 2 32 32 H 1.08997 * 109.47056 * 321.66765 * 14 4 2 33 33 H 0.96702 * 114.00356 * 178.16211 * 16 15 14 34 34 H 1.09002 * 110.75797 * 274.99041 * 17 15 14 35 35 H 1.09005 * 110.75670 * 38.36141 * 17 15 14 36 36 H 1.09004 * 110.48846 * 203.37816 * 18 17 15 37 37 H 1.09005 * 110.48777 * 80.73949 * 18 17 15 38 38 H 1.09007 * 110.03447 * 264.32541 * 19 18 17 39 39 H 1.09003 * 110.03468 * 142.89212 * 19 18 17 40 40 H 1.08998 * 110.03440 * 240.72009 * 20 19 18 41 41 H 1.09004 * 110.03445 * 119.28304 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.8476 -2.1460 1.0752 6 6 2.8210 -2.6820 0.0572 7 1 3.4994 -2.0100 -0.4473 8 6 2.8448 -4.0302 -0.2307 9 7 2.0183 -4.8484 0.3834 10 14 4.0509 -4.6945 -1.4930 11 1 5.4387 -4.3963 -1.0565 12 1 3.8769 -6.1639 -1.6184 13 1 3.7963 -4.0515 -2.8071 14 6 1.3564 -0.1851 2.4079 15 6 2.2193 -0.4969 3.6323 16 8 2.2900 -1.9080 3.8465 17 6 3.6395 0.0977 3.4639 18 6 4.1284 0.2349 4.9271 19 6 2.8723 0.6768 5.7059 20 6 1.6583 0.2116 4.8827 21 1 -0.3634 0.5877 0.8430 22 1 -0.3634 0.4362 -0.9304 23 1 -0.3633 -1.0240 0.0874 24 1 1.8933 -0.5138 -0.8900 25 1 3.1278 1.4433 -0.0686 26 1 1.6217 1.9758 -0.8538 27 1 1.7336 1.9362 0.9222 28 1 2.0342 -2.6177 2.0399 29 1 0.8291 -2.3652 0.7546 30 1 2.0353 -5.7969 0.1810 31 1 0.3838 -0.6648 2.5171 32 1 1.2221 0.8932 2.3231 33 1 2.8476 -2.1650 4.5937 34 1 4.2801 -0.5844 2.9048 35 1 3.5950 1.0727 2.9785 36 1 4.9083 0.9929 4.9993 37 1 4.4908 -0.7233 5.2996 38 1 2.8595 1.7618 5.8093 39 1 2.8584 0.2073 6.6895 40 1 1.0566 1.0708 4.5865 41 1 1.0554 -0.4837 5.4668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083587279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:40 Heat of formation + Delta-G solvation = -61.717392 kcal Electronic energy + Delta-G solvation = -18987.358993 eV Core-core repulsion = 16287.575900 eV Total energy + Delta-G solvation = -2699.783093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.20534 -36.97053 -34.01488 -32.62090 -30.98308 -29.00302 -28.41133 -26.56553 -26.06513 -23.57111 -21.89102 -20.33024 -19.77956 -18.44704 -16.48239 -15.95115 -15.49456 -15.06240 -14.59455 -14.14099 -13.92475 -13.44804 -13.31808 -12.76714 -12.73355 -12.22962 -11.84527 -11.76434 -11.45912 -11.19693 -11.07084 -10.94528 -10.88092 -10.72744 -10.63250 -10.57011 -10.43298 -10.25401 -10.01940 -9.92395 -9.51129 -9.23573 -8.84056 -8.20846 -7.01364 -5.84779 -3.83686 3.41073 3.45003 3.47905 4.53391 4.68390 4.77087 4.89643 5.08378 5.20737 5.49927 5.56390 5.62703 5.65817 5.79431 5.82253 5.82663 5.91999 5.98865 6.03966 6.06422 6.10593 6.13654 6.21554 6.32907 6.33501 6.44446 6.52660 6.55815 6.69466 6.82634 6.88428 6.97205 7.61853 7.74465 7.98202 8.26569 8.41918 8.57914 8.77637 9.25016 9.77635 11.25648 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.008213 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.287829 B = 3408.502497 C = 4026.795760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 C -0.138 4.138 4 N -0.521 5.521 5 C 0.181 3.819 6 C -0.498 4.498 7 H 0.057 0.943 8 C 0.054 3.946 9 N -0.898 5.898 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.072 3.928 15 C 0.138 3.862 16 O -0.530 6.530 17 C -0.129 4.129 18 C -0.134 4.134 19 C -0.124 4.124 20 C -0.155 4.155 21 H 0.044 0.956 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.069 0.931 29 H -0.015 1.015 30 H 0.258 0.742 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.359 0.641 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 11.774 7.544 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.032 4.032 3 C -0.196 4.196 4 N -0.245 5.245 5 C 0.056 3.944 6 C -0.537 4.537 7 H 0.075 0.925 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.719 3.281 11 H -0.204 1.204 12 H -0.216 1.216 13 H -0.206 1.206 14 C -0.057 4.057 15 C 0.097 3.903 16 O -0.335 6.335 17 C -0.167 4.167 18 C -0.172 4.172 19 C -0.161 4.161 20 C -0.193 4.193 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.107 0.893 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.003 0.997 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.205 0.795 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.242 11.665 7.071 13.643 hybrid contribution 0.045 -0.584 -0.252 0.638 sum 0.287 11.081 6.819 13.014 Atomic orbital electron populations 1.22452 0.99028 1.01986 1.00391 1.21619 0.91496 0.94050 0.96050 1.21850 1.01379 0.96364 1.00015 1.62314 1.54781 1.08317 0.99081 1.20078 0.94619 0.80339 0.99334 1.21165 1.18716 0.92217 1.21633 0.92475 1.24940 0.96020 0.97068 0.96616 1.69970 1.37621 1.03541 1.42689 0.86685 0.81830 0.77574 0.81974 1.20404 1.21559 1.20551 1.21962 0.94843 0.98393 0.90490 1.21958 0.94449 0.81333 0.92585 1.86821 1.71945 1.21231 1.53454 1.22919 0.97069 1.01822 0.94852 1.22470 0.97074 1.00898 0.96752 1.22127 0.94984 1.00510 0.98500 1.22913 0.97962 1.00822 0.97618 0.93699 0.93458 0.92134 0.89255 0.92443 0.93580 0.93632 0.91286 0.99685 0.93246 0.95186 0.91277 0.79502 0.89669 0.91251 0.91997 0.91888 0.92203 0.92312 0.91438 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.40 37.15 0.31 -2.90 16 2 C 0.08 1.49 2.78 -67.72 -0.19 1.30 16 3 C -0.14 -2.17 9.29 37.16 0.35 -1.83 16 4 N -0.52 -11.12 3.83 -228.09 -0.87 -11.99 16 5 C 0.18 4.79 4.43 -4.98 -0.02 4.77 16 6 C -0.50 -14.29 8.37 -34.44 -0.29 -14.58 16 7 H 0.06 1.63 7.56 -52.49 -0.40 1.23 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.07 1.32 2.81 -3.82 -0.01 1.31 16 15 C 0.14 2.29 1.03 -88.96 -0.09 2.19 16 16 O -0.53 -10.17 10.29 -35.23 -0.36 -10.53 16 17 C -0.13 -1.99 5.59 -24.74 -0.14 -2.13 16 18 C -0.13 -1.65 6.52 -25.08 -0.16 -1.81 16 19 C -0.12 -1.40 6.80 -25.62 -0.17 -1.57 16 20 C -0.15 -2.05 6.11 -25.61 -0.16 -2.20 16 21 H 0.04 0.72 6.89 -51.93 -0.36 0.37 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 1.24 6.58 -51.93 -0.34 0.90 16 24 H 0.09 1.96 6.98 -51.93 -0.36 1.60 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.04 0.66 6.36 -51.93 -0.33 0.33 16 28 H 0.07 1.98 5.12 -51.93 -0.27 1.71 16 29 H -0.01 -0.42 6.47 -51.93 -0.34 -0.76 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.03 0.60 7.52 -51.93 -0.39 0.21 16 32 H 0.07 1.12 5.66 -51.93 -0.29 0.82 16 33 H 0.36 5.51 8.44 45.56 0.38 5.90 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.75 7.86 -51.93 -0.41 0.34 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.84 7.74 -51.93 -0.40 0.43 16 41 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 LS Contribution 310.46 15.07 4.68 4.68 Total: -1.00 -30.89 310.46 -7.95 -38.84 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.43 Total: 4.49 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -0.67 Total: -15.96 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: -0.14 Total: -38.74 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.36 Total: -10.53 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.89 -7.95 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083587279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.875 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds