Wall clock time and date at job start Mon Mar 30 2020 04:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47088 * 2 1 4 4 N 1.46900 * 109.46772 * 119.99870 * 2 1 3 5 5 C 1.46907 * 111.00118 * 73.70430 * 4 2 1 6 6 C 1.52996 * 109.47133 * 71.94710 * 5 4 2 7 7 C 1.53004 * 109.47080 * 184.51122 * 6 5 4 8 8 O 1.42900 * 109.46878 * 179.97438 * 7 6 5 9 9 C 1.46896 * 111.00171 * 309.74566 * 4 2 1 10 10 C 1.53002 * 109.47148 * 200.04198 * 9 4 2 11 11 C 1.50705 * 115.54791 * 55.10436 * 10 9 4 12 12 H 1.08001 * 119.99690 * 273.79243 * 11 10 9 13 13 C 1.37875 * 119.99914 * 93.51224 * 11 10 9 14 14 N 1.31515 * 119.99646 * 174.38473 * 13 11 10 15 15 Si 1.86797 * 120.00394 * 354.39065 * 13 11 10 16 16 H 1.48497 * 109.47102 * 94.60505 * 15 13 11 17 17 H 1.48501 * 109.47219 * 214.60686 * 15 13 11 18 18 H 1.48502 * 109.46767 * 334.60348 * 15 13 11 19 19 C 1.52995 * 117.49906 * 200.76920 * 10 9 4 20 20 C 1.52995 * 117.50219 * 269.42999 * 10 9 4 21 21 H 1.08999 * 109.47300 * 300.00237 * 1 2 3 22 22 H 1.08998 * 109.46832 * 60.00382 * 1 2 3 23 23 H 1.09004 * 109.46956 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47300 * 239.99763 * 2 1 3 25 25 H 1.08997 * 109.47264 * 184.53032 * 3 2 1 26 26 H 1.08996 * 109.46988 * 304.53032 * 3 2 1 27 27 H 1.09000 * 109.46925 * 64.52482 * 3 2 1 28 28 H 1.09001 * 109.47189 * 191.94920 * 5 4 2 29 29 H 1.08999 * 109.46491 * 311.94556 * 5 4 2 30 30 H 1.09003 * 109.47077 * 304.50436 * 6 5 4 31 31 H 1.08997 * 109.47662 * 64.50841 * 6 5 4 32 32 H 1.09003 * 109.46606 * 299.99603 * 7 6 5 33 33 H 1.08997 * 109.47102 * 59.99377 * 7 6 5 34 34 H 0.96704 * 113.99122 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.46937 * 80.04816 * 9 4 2 36 36 H 1.08997 * 109.47614 * 320.04323 * 9 4 2 37 37 H 0.97005 * 119.99821 * 180.02562 * 14 13 11 38 38 H 1.08999 * 117.49900 * 215.00182 * 19 10 9 39 39 H 1.09000 * 117.50353 * 0.02562 * 19 10 9 40 40 H 1.09005 * 117.50025 * 359.97438 * 20 10 9 41 41 H 1.09005 * 117.49912 * 144.97512 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.8323 -2.1448 1.0823 6 6 2.8269 -2.7069 0.0646 7 6 2.5578 -4.1989 -0.1411 8 8 3.4863 -4.7237 -1.0921 9 6 1.3684 -0.1736 2.4096 10 6 2.2151 -0.5244 3.6348 11 6 3.6508 -0.0687 3.5848 12 1 4.3979 -0.6889 3.1119 13 6 4.0092 1.1424 4.1375 14 7 5.2763 1.4906 4.1929 15 14 2.6955 2.2887 4.8079 16 1 2.5383 2.0619 6.2670 17 1 3.0977 3.6977 4.5664 18 1 1.4060 2.0178 4.1230 19 6 1.5203 -0.5220 4.9979 20 6 1.9181 -1.8473 4.3435 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1270 1.4436 -0.0812 26 1 1.6120 1.9792 -0.8466 27 1 1.7444 1.9323 0.9278 28 1 2.0015 -2.6125 2.0522 29 1 0.8154 -2.3543 0.7504 30 1 2.7112 -2.1827 -0.8841 31 1 3.8427 -2.5686 0.4347 32 1 2.6734 -4.7231 0.8076 33 1 1.5419 -4.3373 -0.5112 34 1 3.3743 -5.6673 -1.2716 35 1 0.3799 -0.6217 2.5108 36 1 1.2704 0.9093 2.3337 37 1 5.5285 2.3426 4.5821 38 1 2.1016 -0.1909 5.8585 39 1 0.4599 -0.2709 5.0219 40 1 1.1192 -2.4677 3.9373 41 1 2.7611 -2.3884 4.7733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:00 Heat of formation + Delta-G solvation = -24.548644 kcal Electronic energy + Delta-G solvation = -18732.575308 eV Core-core repulsion = 16034.403973 eV Total energy + Delta-G solvation = -2698.171335 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.75873 -36.89474 -36.04050 -32.64927 -31.89506 -30.10327 -26.94181 -26.41733 -25.12254 -23.52145 -21.80795 -21.15154 -19.40998 -18.54203 -17.24489 -16.15421 -15.66779 -15.34705 -14.70906 -14.45703 -13.97389 -13.80801 -13.39739 -12.95124 -12.81336 -12.50899 -12.42451 -12.04553 -11.58094 -11.37641 -11.24218 -11.05052 -10.86467 -10.79896 -10.74095 -10.45104 -10.34349 -10.08121 -9.90858 -9.76081 -9.48573 -8.85932 -8.43015 -8.34320 -7.46005 -5.93624 -3.90472 3.35791 3.45673 3.49011 4.12097 4.54708 4.61877 5.03212 5.15115 5.29614 5.34266 5.36071 5.44388 5.59321 5.62672 5.65911 5.78661 5.87961 5.93568 6.01659 6.10140 6.13554 6.17533 6.22119 6.24360 6.31316 6.46595 6.50393 6.60477 6.63700 6.70146 6.77288 6.84032 7.12885 7.25749 7.65244 7.79117 7.89671 7.97140 8.72030 9.14959 9.70795 11.19349 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021484 B = 0.008195 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.973118 B = 3415.761447 C = 3750.765600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.074 3.926 3 C -0.140 4.140 4 N -0.501 5.501 5 C 0.059 3.941 6 C -0.114 4.114 7 C 0.077 3.923 8 O -0.574 6.574 9 C 0.095 3.905 10 C 0.015 3.985 11 C -0.451 4.451 12 H 0.080 0.920 13 C 0.072 3.928 14 N -0.904 5.904 15 Si 0.876 3.124 16 H -0.284 1.284 17 H -0.297 1.297 18 H -0.262 1.262 19 C -0.206 4.206 20 C -0.187 4.187 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.374 0.626 35 H 0.009 0.991 36 H 0.071 0.929 37 H 0.260 0.740 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.914 -7.111 -7.732 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.035 4.035 3 C -0.198 4.198 4 N -0.224 5.224 5 C -0.070 4.070 6 C -0.152 4.152 7 C -0.001 4.001 8 O -0.379 6.379 9 C -0.032 4.032 10 C 0.014 3.986 11 C -0.489 4.489 12 H 0.098 0.902 13 C -0.128 4.128 14 N -0.543 5.543 15 Si 0.706 3.294 16 H -0.211 1.211 17 H -0.225 1.225 18 H -0.187 1.187 19 C -0.244 4.244 20 C -0.225 4.225 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.220 0.780 35 H 0.027 0.973 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.067 -6.232 -7.630 13.389 hybrid contribution -1.854 -0.008 0.467 1.912 sum -10.921 -6.240 -7.163 14.475 Atomic orbital electron populations 1.22520 0.98753 1.01249 1.01920 1.21743 0.91615 0.96022 0.94137 1.21793 1.02342 0.94749 1.00902 1.61836 1.57543 1.01951 1.01039 1.22007 0.95451 0.89676 0.99829 1.21485 1.01906 0.92162 0.99662 1.22185 0.91040 0.95697 0.91142 1.86514 1.58893 1.28532 1.63972 1.21861 0.92331 0.99234 0.89794 1.19451 0.96142 0.95752 0.87303 1.20117 0.89278 1.03956 1.35568 0.90248 1.24928 0.94732 0.97577 0.95577 1.69905 1.15663 1.22492 1.46226 0.86924 0.83301 0.79906 0.79300 1.21065 1.22479 1.18707 1.22954 0.98791 1.03051 0.99591 1.22885 1.01651 0.90982 1.06938 0.92402 0.92762 0.93151 0.90563 0.91442 0.93453 0.92405 0.89791 0.96028 0.91744 0.89992 0.93620 0.94367 0.78011 0.97339 0.91053 0.92979 0.89462 0.91324 0.91548 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 8.49 37.16 0.32 -2.28 16 2 C 0.07 1.19 2.80 -67.71 -0.19 1.00 16 3 C -0.14 -2.34 9.29 37.16 0.35 -1.99 16 4 N -0.50 -9.41 4.01 -226.65 -0.91 -10.32 16 5 C 0.06 0.96 4.70 -3.82 -0.02 0.94 16 6 C -0.11 -1.77 5.71 -26.73 -0.15 -1.93 16 7 C 0.08 0.98 7.05 37.16 0.26 1.25 16 8 O -0.57 -7.41 13.66 -35.23 -0.48 -7.90 16 9 C 0.10 1.93 3.23 -3.82 -0.01 1.92 16 10 C 0.01 0.34 0.76 -155.66 -0.12 0.22 16 11 C -0.45 -12.43 9.14 -34.44 -0.31 -12.75 16 12 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 13 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 14 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 15 Si 0.88 21.90 24.77 -169.99 -4.21 17.69 16 16 H -0.28 -7.04 7.10 56.52 0.40 -6.64 16 17 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 18 H -0.26 -6.18 5.74 56.52 0.32 -5.85 16 19 C -0.21 -4.42 7.43 -26.70 -0.20 -4.62 16 20 C -0.19 -3.78 8.47 -26.70 -0.23 -4.01 16 21 H 0.06 0.86 6.64 -51.93 -0.34 0.51 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.67 6.66 -51.93 -0.35 0.32 16 24 H 0.08 1.16 6.27 -51.93 -0.33 0.84 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.05 6.29 -51.93 -0.33 0.73 16 28 H 0.08 1.46 5.53 -51.93 -0.29 1.17 16 29 H 0.02 0.32 6.47 -51.93 -0.34 -0.02 16 30 H 0.06 1.00 6.43 -51.93 -0.33 0.66 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.37 2.86 9.12 45.56 0.42 3.27 16 35 H 0.01 0.16 7.31 -51.93 -0.38 -0.22 16 36 H 0.07 1.53 4.67 -51.93 -0.24 1.29 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.09 1.99 6.83 -51.93 -0.35 1.64 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.07 1.18 7.61 -51.93 -0.39 0.78 16 41 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 310.20 15.07 4.67 4.67 Total: -1.00 -30.94 310.20 -6.83 -37.77 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.27 Total: 5.33 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -0.40 Total: -20.28 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.13 Total: -37.29 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.48 Total: -7.90 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.21 Total: 17.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.94 -6.83 -37.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.221 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds