Wall clock time and date at job start Mon Mar 30 2020 04:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46762 * 2 1 4 4 H 1.09003 * 109.47679 * 304.44751 * 3 2 1 5 5 C 1.50705 * 109.47004 * 184.44584 * 3 2 1 6 6 H 1.07996 * 120.00091 * 245.39530 * 5 3 2 7 7 C 1.37877 * 119.99826 * 65.39301 * 5 3 2 8 8 N 1.31514 * 120.00450 * 193.83619 * 7 5 3 9 9 Si 1.86802 * 120.00057 * 13.84293 * 7 5 3 10 10 H 1.48495 * 109.47320 * 84.18327 * 9 7 5 11 11 H 1.48504 * 109.47463 * 204.18907 * 9 7 5 12 12 H 1.48507 * 109.46854 * 324.18737 * 9 7 5 13 13 N 1.46901 * 109.47045 * 64.45064 * 3 2 1 14 14 C 1.46905 * 110.99908 * 262.16571 * 13 3 2 15 15 C 1.52996 * 109.46895 * 175.21017 * 14 13 3 16 16 H 1.08999 * 110.05969 * 53.58916 * 15 14 13 17 17 C 1.54375 * 110.04901 * 292.10914 * 15 14 13 18 18 C 1.54884 * 104.19827 * 217.09319 * 17 15 14 19 19 C 1.54894 * 102.75105 * 37.97063 * 18 17 15 20 20 C 1.53879 * 110.02936 * 175.00230 * 15 14 13 21 21 H 1.08998 * 110.02960 * 238.61663 * 20 15 14 22 22 C 1.52998 * 110.03391 * 359.97438 * 20 15 14 23 23 O 1.42897 * 109.47375 * 184.31012 * 22 20 15 24 24 H 1.08996 * 109.47583 * 297.41469 * 1 2 3 25 25 H 1.09002 * 109.47236 * 57.41608 * 1 2 3 26 26 H 1.09000 * 109.47197 * 177.41748 * 1 2 3 27 27 H 1.09003 * 109.46907 * 240.00341 * 2 1 3 28 28 H 1.08998 * 109.47202 * 120.00104 * 2 1 3 29 29 H 0.96991 * 120.00481 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00221 * 138.21671 * 13 3 2 31 31 H 1.08999 * 109.46520 * 55.20872 * 14 13 3 32 32 H 1.09003 * 109.47094 * 295.20801 * 14 13 3 33 33 H 1.09003 * 110.46313 * 98.42254 * 17 15 14 34 34 H 1.09001 * 110.62180 * 335.84053 * 17 15 14 35 35 H 1.09001 * 110.75894 * 279.65642 * 18 17 15 36 36 H 1.09006 * 110.91586 * 156.35730 * 18 17 15 37 37 H 1.08997 * 110.48834 * 203.38044 * 19 18 17 38 38 H 1.09004 * 110.59615 * 80.78547 * 19 18 17 39 39 H 1.09005 * 109.46892 * 64.30963 * 22 20 15 40 40 H 1.08999 * 109.47377 * 304.31394 * 22 20 15 41 41 H 0.96697 * 114.00496 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6130 1.9789 -0.8475 5 6 3.5429 1.4440 -0.1101 6 1 4.1440 1.8118 0.7082 7 6 4.1506 0.9757 -1.2557 8 7 5.4406 0.7199 -1.2584 9 14 3.1417 0.7046 -2.8043 10 1 3.0167 1.9859 -3.5443 11 1 3.8159 -0.3005 -3.6649 12 1 1.7901 0.2127 -2.4346 13 7 1.6399 2.1032 1.2496 14 6 0.4249 2.9058 1.0552 15 6 -0.0274 3.4801 2.3992 16 1 0.7945 4.0181 2.8715 17 6 -0.5168 2.3437 3.3225 18 6 -1.7153 2.9624 4.0838 19 6 -2.3996 3.8292 2.9978 20 6 -1.2254 4.4236 2.1929 21 1 -0.9844 5.4196 2.5643 22 6 -1.5887 4.4925 0.7083 23 8 -2.6352 5.4466 0.5177 24 1 -0.3634 0.4731 0.9122 25 1 -0.3634 0.5534 -0.8659 26 1 -0.3633 -1.0266 -0.0463 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8681 0.3902 -2.0641 30 1 2.3912 2.6679 1.6166 31 1 -0.3646 2.2761 0.6449 32 1 0.6352 3.7218 0.3637 33 1 0.2695 2.0538 4.0196 34 1 -0.8404 1.4844 2.7352 35 1 -1.3692 3.5820 4.9111 36 1 -2.3919 2.1860 4.4413 37 1 -2.9874 4.6235 3.4579 38 1 -3.0290 3.2130 2.3556 39 1 -1.9249 3.5121 0.3706 40 1 -0.7130 4.7940 0.1335 41 1 -2.9168 5.5432 -0.4023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084315881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:18 Heat of formation + Delta-G solvation = -90.952276 kcal Electronic energy + Delta-G solvation = -18489.764066 eV Core-core repulsion = 15788.713254 eV Total energy + Delta-G solvation = -2701.050812 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33025 -37.98249 -36.94429 -34.49128 -33.16448 -31.19949 -30.37101 -28.40641 -25.29200 -24.87279 -23.84060 -21.55132 -21.43909 -19.81153 -18.75945 -18.33949 -17.24573 -16.77030 -16.01999 -15.79653 -15.48546 -15.28841 -14.82214 -14.67366 -14.30026 -13.97240 -13.77377 -13.50131 -13.19000 -12.90244 -12.69885 -12.62652 -12.10957 -11.88346 -11.83606 -11.82287 -11.75473 -11.46778 -11.40020 -11.25325 -11.09613 -10.95348 -10.70041 -10.56154 -8.99670 -8.32985 -6.33469 1.32595 1.35446 1.45157 2.33264 3.01774 3.31670 3.46409 3.69919 3.92553 3.98083 4.32459 4.42184 4.42777 4.47186 4.52043 4.55343 4.60988 4.69509 4.73619 4.81216 4.86601 4.90582 4.96140 4.98148 5.12835 5.19273 5.22910 5.29389 5.33100 5.40564 5.48215 5.52397 5.56103 5.64811 5.83896 6.03273 6.52112 6.70162 6.87301 6.91234 7.32985 8.83511 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.006350 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.773573 B = 4408.242967 C = 4683.736311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.198 3.802 4 H -0.002 1.002 5 C -0.535 4.535 6 H 0.036 0.964 7 C 0.020 3.980 8 N -0.942 5.942 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.222 1.222 13 N -0.677 5.677 14 C 0.056 3.944 15 C -0.077 4.077 16 H 0.067 0.933 17 C -0.102 4.102 18 C -0.123 4.123 19 C -0.106 4.106 20 C -0.086 4.086 21 H 0.072 0.928 22 C 0.078 3.922 23 O -0.589 6.589 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.265 0.735 30 H 0.331 0.669 31 H 0.079 0.921 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.043 0.957 41 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.936 5.205 4.736 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C 0.089 3.911 4 H 0.015 0.985 5 C -0.573 4.573 6 H 0.055 0.945 7 C -0.179 4.179 8 N -0.581 5.581 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.145 1.145 13 N -0.307 5.307 14 C -0.073 4.073 15 C -0.096 4.096 16 H 0.085 0.915 17 C -0.140 4.140 18 C -0.161 4.161 19 C -0.143 4.143 20 C -0.105 4.105 21 H 0.090 0.910 22 C 0.001 3.999 23 O -0.397 6.397 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -18.072 4.645 5.512 19.457 hybrid contribution 0.999 0.563 -1.995 2.301 sum -17.073 5.209 3.518 18.193 Atomic orbital electron populations 1.21844 0.95438 1.01184 1.01448 1.21815 0.95588 0.97876 0.99787 1.19266 0.92163 0.92083 0.87613 0.98453 1.21549 0.91816 1.42272 1.01673 0.94539 1.25771 0.95731 0.94123 1.02231 1.70102 1.12569 1.45874 1.29581 0.86266 0.81624 0.78197 0.79080 1.20232 1.21500 1.14452 1.60503 1.06891 1.34312 1.28955 1.22449 0.93577 0.95003 0.96224 1.21707 0.96551 0.95924 0.95378 0.91472 1.22244 0.97337 0.96941 0.97454 1.22537 0.96929 0.99081 0.97515 1.22292 0.96323 0.98799 0.96909 1.21741 0.95300 0.99162 0.94263 0.90975 1.22468 0.89328 0.91572 0.96556 1.86398 1.56213 1.63092 1.33974 0.91354 0.93784 0.92629 0.94178 0.93621 0.92587 0.85151 0.90289 0.96441 0.92231 0.91942 0.91264 0.90676 0.91494 0.91702 0.93005 0.93837 0.75724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 8.66 71.98 0.62 -4.03 16 2 C -0.11 -4.72 4.96 30.59 0.15 -4.56 16 3 C 0.20 8.97 1.80 44.17 0.08 9.05 16 4 H 0.00 -0.10 6.42 -2.39 -0.02 -0.11 16 5 C -0.53 -29.98 9.00 25.60 0.23 -29.75 16 6 H 0.04 2.27 7.73 -2.91 -0.02 2.25 16 7 C 0.02 1.14 5.36 84.65 0.45 1.60 16 8 N -0.94 -58.44 13.96 21.45 0.30 -58.15 16 9 Si 0.92 42.97 25.87 68.60 1.77 44.75 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.22 -9.28 5.35 99.48 0.53 -8.75 16 13 N -0.68 -26.12 5.91 -495.43 -2.93 -29.05 16 14 C 0.06 1.74 3.11 86.30 0.27 2.01 16 15 C -0.08 -1.98 3.13 -10.03 -0.03 -2.01 16 16 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 17 C -0.10 -2.49 6.19 31.70 0.20 -2.29 16 18 C -0.12 -2.43 6.91 31.88 0.22 -2.21 16 19 C -0.11 -2.17 6.21 31.67 0.20 -1.97 16 20 C -0.09 -1.98 3.19 -10.07 -0.03 -2.01 16 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 22 C 0.08 1.77 5.14 71.98 0.37 2.14 16 23 O -0.59 -12.48 13.49 -148.98 -2.01 -14.49 16 24 H 0.07 2.10 5.29 -2.39 -0.01 2.09 16 25 H 0.04 1.37 8.12 -2.39 -0.02 1.35 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.77 4.72 -2.39 -0.01 1.76 16 28 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.27 15.45 8.31 -92.72 -0.77 14.68 16 30 H 0.33 13.54 8.03 -89.69 -0.72 12.82 16 31 H 0.08 2.34 4.43 -2.39 -0.01 2.33 16 32 H 0.02 0.56 6.31 -2.39 -0.02 0.55 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.61 6.79 -2.39 -0.02 1.60 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.33 7.77 -2.39 -0.02 1.31 16 39 H 0.05 1.13 7.02 -2.38 -0.02 1.11 16 40 H 0.04 1.04 6.34 -2.39 -0.02 1.03 16 41 H 0.39 4.95 9.12 -74.06 -0.68 4.27 16 Total: -1.00 -64.17 304.01 -0.69 -64.85 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: -0.55 Total: 26.13 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 2.73 Total: -34.04 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.63 Total: -87.20 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -2.01 Total: -14.49 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.77 Total: 44.75 kcal Total: -64.17 -0.69 -64.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084315881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.100 kcal (2) G-P(sol) polarization free energy of solvation -64.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds